Wall clock time and date at job start Tue Mar 31 2020 07:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00366 * 2 1 4 4 C 1.39897 * 119.99967 * 180.02562 * 2 1 3 5 5 C 1.38892 * 120.00223 * 354.53175 * 4 2 1 6 6 C 1.38065 * 119.99459 * 180.02562 * 5 4 2 7 7 C 1.38854 * 120.00053 * 0.27652 * 6 5 4 8 8 N 1.40152 * 119.99413 * 179.70473 * 7 6 5 9 9 C 1.34780 * 120.00051 * 35.12310 * 8 7 6 10 10 O 1.21301 * 119.99683 * 355.54303 * 9 8 7 11 11 C 1.50698 * 120.00392 * 175.53908 * 9 8 7 12 12 H 1.09008 * 109.46818 * 320.00403 * 11 9 8 13 13 N 1.46897 * 109.47173 * 200.00322 * 11 9 8 14 14 C 1.53003 * 109.47003 * 80.00074 * 11 9 8 15 15 C 1.52999 * 109.46880 * 185.00155 * 14 11 9 16 16 C 1.50701 * 109.46691 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00395 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00050 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00431 * 179.97438 * 18 16 15 20 20 Si 1.86809 * 119.99807 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46679 * 90.00373 * 20 18 16 22 22 H 1.48498 * 109.46880 * 210.00251 * 20 18 16 23 23 H 1.48500 * 109.46806 * 330.00425 * 20 18 16 24 24 C 1.38855 * 120.01366 * 359.44600 * 7 6 5 25 25 C 1.38062 * 119.99893 * 0.55359 * 24 7 6 26 26 H 1.08996 * 109.47044 * 185.03450 * 1 2 3 27 27 H 1.08996 * 109.46658 * 305.03301 * 1 2 3 28 28 H 1.09001 * 109.46463 * 65.03327 * 1 2 3 29 29 H 1.08996 * 109.47495 * 270.00510 * 3 2 1 30 30 H 1.08999 * 109.46906 * 30.00414 * 3 2 1 31 31 H 1.09004 * 109.46889 * 149.99707 * 3 2 1 32 32 H 1.07993 * 120.00376 * 0.04665 * 5 4 2 33 33 H 1.07992 * 119.99573 * 180.02562 * 6 5 4 34 34 H 0.96993 * 120.00523 * 215.12768 * 8 7 6 35 35 H 1.00892 * 111.00023 * 299.99617 * 13 11 9 36 36 H 1.00900 * 111.00395 * 63.95900 * 13 11 9 37 37 H 1.08998 * 109.47323 * 305.00393 * 14 11 9 38 38 H 1.09002 * 109.46953 * 64.99995 * 14 11 9 39 39 H 1.08994 * 109.47354 * 299.99724 * 15 14 11 40 40 H 1.08997 * 109.46996 * 60.00713 * 15 14 11 41 41 H 0.97000 * 120.00200 * 179.97438 * 19 18 16 42 42 H 1.07997 * 119.99872 * 180.25741 * 24 7 6 43 43 H 1.07998 * 120.00250 * 179.69857 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1645 -1.2115 -0.0005 5 6 1.4748 -2.4117 0.1135 6 6 2.1653 -3.6073 0.1135 7 6 3.5496 -3.6095 0.0052 8 7 4.2509 -4.8229 0.0115 9 6 3.7126 -5.9154 -0.5658 10 8 2.5883 -5.8701 -1.0190 11 6 4.5073 -7.1932 -0.6482 12 1 5.5450 -6.9608 -0.8879 13 7 3.9434 -8.0538 -1.6966 14 6 4.4450 -7.9201 0.6967 15 6 5.3516 -9.1518 0.6530 16 6 5.2898 -9.8681 1.9774 17 1 4.6666 -9.4831 2.7711 18 6 6.0296 -11.0144 2.1764 19 7 5.9761 -11.6393 3.3323 20 14 7.1081 -11.6800 0.8040 21 1 8.4645 -11.0843 0.9074 22 1 7.2057 -13.1570 0.9232 23 1 6.5115 -11.3276 -0.5094 24 6 4.2389 -2.4101 -0.1146 25 6 3.5487 -1.2144 -0.1146 26 1 -0.3633 -1.0237 0.0902 27 1 -0.3632 0.5899 0.8415 28 1 -0.3632 0.4338 -0.9317 29 1 2.3792 1.5834 -1.0276 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1382 0.5139 32 1 0.3985 -2.4098 0.2019 33 1 1.6290 -4.5405 0.2018 34 1 5.1237 -4.8766 0.4312 35 1 2.9814 -8.2835 -1.4973 36 1 4.0315 -7.6227 -2.6047 37 1 4.7806 -7.2498 1.4879 38 1 3.4191 -8.2308 0.8946 39 1 5.0160 -9.8221 -0.1382 40 1 6.3774 -8.8410 0.4552 41 1 6.4963 -12.4460 3.4722 42 1 5.3152 -2.4123 -0.2030 43 1 4.0851 -0.2812 -0.2030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691562413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:28 Heat of formation + Delta-G solvation = 0.491789 kcal Electronic energy + Delta-G solvation = -22466.103765 eV Core-core repulsion = 19125.261882 eV Total energy + Delta-G solvation = -3340.841884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.58042 -39.24089 -36.71797 -35.31125 -34.11046 -32.76238 -31.31983 -30.50122 -29.32102 -28.44348 -26.80995 -24.91994 -23.38604 -22.72641 -21.08765 -20.36198 -19.79906 -18.07938 -17.27050 -16.88583 -16.62283 -15.93305 -15.52642 -15.35134 -14.84435 -14.65152 -14.39398 -14.12104 -13.88367 -13.59353 -13.42878 -12.89767 -12.76360 -12.66359 -12.56654 -12.40219 -12.31395 -12.24737 -11.66922 -11.16330 -11.04267 -10.87041 -10.59379 -10.29968 -9.92195 -9.77056 -9.56910 -9.18533 -9.10466 -8.99007 -8.51307 -8.41828 -7.19554 -5.98707 -3.96431 1.32358 1.42537 2.68695 2.87634 3.20163 3.36614 3.44561 3.52508 3.81065 4.52151 4.57533 4.67217 4.74035 4.88135 4.95513 4.98118 5.03375 5.23230 5.25406 5.32457 5.34206 5.37986 5.40234 5.47162 5.52133 5.65188 5.90812 5.99969 6.10085 6.27931 6.37246 6.47607 6.49929 6.85465 6.86794 7.02143 7.23198 7.30584 7.36237 7.49041 7.59401 7.65233 7.87025 8.20633 8.58558 9.06053 9.64198 11.14735 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.033765 B = 0.002660 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.057299 B =10521.920055 C =10639.386021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.642 5.642 3 C 0.097 3.903 4 C 0.196 3.804 5 C -0.181 4.181 6 C -0.070 4.070 7 C 0.091 3.909 8 N -0.670 5.670 9 C 0.483 3.517 10 O -0.537 6.537 11 C 0.077 3.923 12 H 0.100 0.900 13 N -0.810 5.810 14 C -0.088 4.088 15 C -0.004 4.004 16 C -0.521 4.521 17 H 0.069 0.931 18 C 0.065 3.935 19 N -0.906 5.906 20 Si 0.879 3.121 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.260 1.260 24 C -0.098 4.098 25 C -0.180 4.180 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.411 0.589 35 H 0.350 0.650 36 H 0.336 0.664 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.034 0.966 40 H 0.009 0.991 41 H 0.262 0.738 42 H 0.124 0.876 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.485 25.718 -8.655 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.356 5.356 3 C -0.047 4.047 4 C 0.095 3.905 5 C -0.204 4.204 6 C -0.091 4.091 7 C -0.004 4.004 8 N -0.316 5.316 9 C 0.270 3.730 10 O -0.414 6.414 11 C -0.039 4.039 12 H 0.118 0.882 13 N -0.338 5.338 14 C -0.127 4.127 15 C -0.042 4.042 16 C -0.559 4.559 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.546 5.546 20 Si 0.707 3.293 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.184 1.184 24 C -0.118 4.118 25 C -0.203 4.203 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.157 0.843 34 H 0.247 0.753 35 H 0.165 0.835 36 H 0.148 0.852 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.053 0.947 40 H 0.027 0.973 41 H 0.072 0.928 42 H 0.142 0.858 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.741 25.145 -8.698 27.448 hybrid contribution 0.370 0.505 -0.511 0.808 sum -6.371 25.650 -9.209 27.988 Atomic orbital electron populations 1.21669 0.79722 1.03121 1.00735 1.46266 1.04826 1.03007 1.81509 1.21558 0.97157 0.85028 1.00927 1.17836 0.91224 0.85624 0.95783 1.20638 0.99732 0.90661 1.09342 1.21091 0.92886 0.98452 0.96631 1.17656 0.91731 0.85309 1.05752 1.43690 1.22444 1.08282 1.57159 1.22834 0.88104 0.86182 0.75896 1.90640 1.19087 1.84147 1.47503 1.21882 0.98083 0.87164 0.96797 0.88188 1.59028 1.26160 1.44890 1.03689 1.21494 1.02105 0.98411 0.90656 1.19486 0.93720 0.92936 0.98031 1.21180 1.27394 1.09165 0.98204 0.91296 1.25020 0.96586 0.96513 0.95423 1.69922 1.42038 1.19121 1.23479 0.86772 0.80980 0.77841 0.83739 1.20518 1.21625 1.18392 1.20674 0.99594 0.90817 1.00759 1.20405 0.92055 0.97916 1.09904 0.90332 0.92796 0.93221 0.93675 0.91771 0.91412 0.85719 0.84346 0.75293 0.83543 0.85229 0.92134 0.92095 0.94746 0.97313 0.92842 0.85771 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.63 59.85 0.64 1.26 16 2 N -0.64 -5.69 3.41 -187.49 -0.64 -6.33 16 3 C 0.10 0.61 10.11 59.85 0.60 1.21 16 4 C 0.20 2.16 6.54 -83.69 -0.55 1.61 16 5 C -0.18 -2.18 9.31 -39.40 -0.37 -2.54 16 6 C -0.07 -0.98 8.69 -39.42 -0.34 -1.32 16 7 C 0.09 1.19 6.30 -83.60 -0.53 0.67 16 8 N -0.67 -8.58 5.34 -9.81 -0.05 -8.63 16 9 C 0.48 7.28 6.91 -10.99 -0.08 7.20 16 10 O -0.54 -9.36 13.69 5.54 0.08 -9.29 16 11 C 0.08 1.18 3.15 -68.87 -0.22 0.96 16 12 H 0.10 1.39 8.14 -51.92 -0.42 0.97 16 13 N -0.81 -12.50 8.44 -5.65 -0.05 -12.54 16 14 C -0.09 -1.67 4.78 -26.73 -0.13 -1.80 16 15 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 16 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 17 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 20 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 24 C -0.10 -1.07 9.96 -39.42 -0.39 -1.46 16 25 C -0.18 -1.87 9.16 -39.40 -0.36 -2.24 16 26 H 0.08 0.54 5.31 -51.93 -0.28 0.27 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.31 8.07 -51.93 -0.42 -0.11 16 31 H 0.07 0.40 6.44 -51.93 -0.33 0.06 16 32 H 0.13 1.28 5.73 -52.49 -0.30 0.98 16 33 H 0.14 2.16 6.23 -52.49 -0.33 1.83 16 34 H 0.41 4.27 8.82 -40.82 -0.36 3.91 16 35 H 0.35 5.52 8.58 -39.30 -0.34 5.18 16 36 H 0.34 4.48 9.06 -39.29 -0.36 4.13 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.83 6.81 -51.93 -0.35 0.48 16 40 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.12 1.01 6.29 -52.49 -0.33 0.68 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -34.02 349.80 -7.88 -41.90 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.33 Total: 9.80 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -2.26 Total: -10.00 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.03 Total: -54.92 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.02 -7.88 -41.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691562413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.390 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds