Wall clock time and date at job start Tue Mar 31 2020 07:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00366 * 2 1 4 4 C 1.39897 * 119.99967 * 180.02562 * 2 1 3 5 5 C 1.38892 * 120.00223 * 354.53175 * 4 2 1 6 6 C 1.38065 * 119.99459 * 180.02562 * 5 4 2 7 7 C 1.38854 * 120.00053 * 0.27652 * 6 5 4 8 8 N 1.40152 * 119.99413 * 179.70473 * 7 6 5 9 9 C 1.34780 * 120.00051 * 35.12310 * 8 7 6 10 10 O 1.21301 * 119.99683 * 355.54303 * 9 8 7 11 11 C 1.50698 * 120.00392 * 175.53908 * 9 8 7 12 12 H 1.09008 * 109.46818 * 320.00403 * 11 9 8 13 13 N 1.46897 * 109.47173 * 200.00322 * 11 9 8 14 14 C 1.53003 * 109.47003 * 80.00074 * 11 9 8 15 15 C 1.52999 * 109.46880 * 185.00155 * 14 11 9 16 16 C 1.50701 * 109.46691 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00395 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00050 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00431 * 179.97438 * 18 16 15 20 20 Si 1.86809 * 119.99807 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46679 * 90.00373 * 20 18 16 22 22 H 1.48498 * 109.46880 * 210.00251 * 20 18 16 23 23 H 1.48500 * 109.46806 * 330.00425 * 20 18 16 24 24 C 1.38855 * 120.01366 * 359.44600 * 7 6 5 25 25 C 1.38062 * 119.99893 * 0.55359 * 24 7 6 26 26 H 1.08996 * 109.47044 * 185.03450 * 1 2 3 27 27 H 1.08996 * 109.46658 * 305.03301 * 1 2 3 28 28 H 1.09001 * 109.46463 * 65.03327 * 1 2 3 29 29 H 1.08996 * 109.47495 * 270.00510 * 3 2 1 30 30 H 1.08999 * 109.46906 * 30.00414 * 3 2 1 31 31 H 1.09004 * 109.46889 * 149.99707 * 3 2 1 32 32 H 1.07993 * 120.00376 * 0.04665 * 5 4 2 33 33 H 1.07992 * 119.99573 * 180.02562 * 6 5 4 34 34 H 0.96993 * 120.00523 * 215.12768 * 8 7 6 35 35 H 1.00892 * 111.00023 * 299.99617 * 13 11 9 36 36 H 1.00900 * 111.00395 * 63.95900 * 13 11 9 37 37 H 1.08998 * 109.47323 * 305.00393 * 14 11 9 38 38 H 1.09002 * 109.46953 * 64.99995 * 14 11 9 39 39 H 1.08994 * 109.47354 * 299.99724 * 15 14 11 40 40 H 1.08997 * 109.46996 * 60.00713 * 15 14 11 41 41 H 0.97000 * 120.00200 * 179.97438 * 19 18 16 42 42 H 1.07997 * 119.99872 * 180.25741 * 24 7 6 43 43 H 1.07998 * 120.00250 * 179.69857 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1645 -1.2115 -0.0005 5 6 1.4748 -2.4117 0.1135 6 6 2.1653 -3.6073 0.1135 7 6 3.5496 -3.6095 0.0052 8 7 4.2509 -4.8229 0.0115 9 6 3.7126 -5.9154 -0.5658 10 8 2.5883 -5.8701 -1.0190 11 6 4.5073 -7.1932 -0.6482 12 1 5.5450 -6.9608 -0.8879 13 7 3.9434 -8.0538 -1.6966 14 6 4.4450 -7.9201 0.6967 15 6 5.3516 -9.1518 0.6530 16 6 5.2898 -9.8681 1.9774 17 1 4.6666 -9.4831 2.7711 18 6 6.0296 -11.0144 2.1764 19 7 5.9761 -11.6393 3.3323 20 14 7.1081 -11.6800 0.8040 21 1 8.4645 -11.0843 0.9074 22 1 7.2057 -13.1570 0.9232 23 1 6.5115 -11.3276 -0.5094 24 6 4.2389 -2.4101 -0.1146 25 6 3.5487 -1.2144 -0.1146 26 1 -0.3633 -1.0237 0.0902 27 1 -0.3632 0.5899 0.8415 28 1 -0.3632 0.4338 -0.9317 29 1 2.3792 1.5834 -1.0276 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1382 0.5139 32 1 0.3985 -2.4098 0.2019 33 1 1.6290 -4.5405 0.2018 34 1 5.1237 -4.8766 0.4312 35 1 2.9814 -8.2835 -1.4973 36 1 4.0315 -7.6227 -2.6047 37 1 4.7806 -7.2498 1.4879 38 1 3.4191 -8.2308 0.8946 39 1 5.0160 -9.8221 -0.1382 40 1 6.3774 -8.8410 0.4552 41 1 6.4963 -12.4460 3.4722 42 1 5.3152 -2.4123 -0.2030 43 1 4.0851 -0.2812 -0.2030 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691562413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:27 Heat of formation + Delta-G solvation = -24.122752 kcal Electronic energy + Delta-G solvation = -22467.171132 eV Core-core repulsion = 19125.261882 eV Total energy + Delta-G solvation = -3341.909251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63559 -40.16583 -37.61243 -36.73328 -35.07775 -34.76832 -32.29965 -32.13478 -30.23659 -29.01123 -28.33572 -26.02972 -24.66450 -23.62755 -22.33736 -21.68257 -21.02611 -19.13285 -18.77891 -18.22273 -17.74385 -17.04158 -16.55490 -16.23256 -15.94332 -15.85235 -15.76891 -15.31090 -14.98700 -14.70699 -14.65481 -14.38469 -13.99536 -13.64895 -13.52836 -13.38930 -13.34606 -12.94610 -12.84896 -12.79137 -12.51668 -12.02711 -11.91674 -11.73733 -11.58572 -11.47613 -11.26303 -11.02521 -10.69572 -10.03725 -9.90242 -9.68106 -8.23693 -7.99122 -6.27021 0.44364 0.49140 1.41262 1.44969 1.54820 1.59041 2.11956 2.28814 2.43057 2.91562 3.12924 3.52508 3.76338 3.90443 3.99945 4.07902 4.21912 4.26603 4.41562 4.45426 4.52697 4.56428 4.64448 4.72064 4.78283 4.83610 4.89758 4.91297 5.03588 5.15298 5.17092 5.27476 5.47622 5.51396 5.57855 5.66964 5.75422 5.93491 6.06936 6.33782 6.36164 6.43843 6.52671 6.53529 6.81856 7.12734 7.37509 8.93231 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.033765 B = 0.002660 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.057299 B =10521.920055 C =10639.386021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.646 5.646 3 C 0.090 3.910 4 C 0.195 3.805 5 C -0.195 4.195 6 C -0.091 4.091 7 C 0.064 3.936 8 N -0.657 5.657 9 C 0.484 3.516 10 O -0.565 6.565 11 C 0.088 3.912 12 H 0.125 0.875 13 N -0.817 5.817 14 C -0.080 4.080 15 C 0.002 3.998 16 C -0.531 4.531 17 H 0.027 0.973 18 C 0.001 3.999 19 N -0.956 5.956 20 Si 0.953 3.047 21 H -0.264 1.264 22 H -0.290 1.290 23 H -0.243 1.243 24 C -0.090 4.090 25 C -0.182 4.182 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.112 0.888 34 H 0.423 0.577 35 H 0.346 0.654 36 H 0.349 0.651 37 H 0.066 0.934 38 H 0.040 0.960 39 H 0.030 0.970 40 H 0.024 0.976 41 H 0.264 0.736 42 H 0.151 0.849 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.003 28.113 -10.499 30.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.359 5.359 3 C -0.052 4.052 4 C 0.092 3.908 5 C -0.217 4.217 6 C -0.112 4.112 7 C -0.031 4.031 8 N -0.303 5.303 9 C 0.271 3.729 10 O -0.444 6.444 11 C -0.027 4.027 12 H 0.143 0.857 13 N -0.346 5.346 14 C -0.119 4.119 15 C -0.035 4.035 16 C -0.569 4.569 17 H 0.045 0.955 18 C -0.195 4.195 19 N -0.597 5.597 20 Si 0.776 3.224 21 H -0.189 1.189 22 H -0.216 1.216 23 H -0.167 1.167 24 C -0.110 4.110 25 C -0.204 4.204 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.150 0.850 33 H 0.130 0.870 34 H 0.261 0.739 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.168 0.832 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.256 27.609 -10.543 30.018 hybrid contribution -0.204 -0.091 0.156 0.272 sum -5.460 27.518 -10.388 29.916 Atomic orbital electron populations 1.21809 0.78862 1.03206 1.01945 1.46561 1.05687 1.03087 1.80522 1.21754 0.97549 0.84173 1.01735 1.18011 0.91826 0.86112 0.94810 1.20733 1.00314 0.90717 1.09977 1.20999 0.93648 0.98125 0.98424 1.17826 0.91609 0.85988 1.07696 1.43529 1.22737 1.07831 1.56216 1.22662 0.87592 0.86633 0.76027 1.90638 1.20159 1.84647 1.48952 1.21681 0.99539 0.86820 0.94699 0.85701 1.59030 1.25916 1.45169 1.04466 1.21280 0.99882 0.97326 0.93372 1.19372 0.95423 0.94009 0.94697 1.21574 1.26236 1.09637 0.99484 0.95451 1.26039 0.98396 0.96921 0.98178 1.70085 1.43626 1.19947 1.26059 0.85610 0.79288 0.76899 0.80561 1.18865 1.21646 1.16676 1.20948 1.00861 0.89987 0.99226 1.20746 0.91943 0.98799 1.08951 0.90944 0.91254 0.92179 0.92961 0.90047 0.90854 0.84976 0.87033 0.73889 0.84022 0.83738 0.91525 0.94147 0.95185 0.95738 0.92683 0.83179 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.63 127.77 1.36 2.37 16 2 N -0.65 -10.04 3.41 -747.11 -2.55 -12.59 16 3 C 0.09 0.86 10.11 127.77 1.29 2.15 16 4 C 0.19 4.00 6.54 38.17 0.25 4.24 16 5 C -0.19 -4.68 9.31 22.39 0.21 -4.48 16 6 C -0.09 -2.61 8.69 22.38 0.19 -2.42 16 7 C 0.06 1.63 6.30 38.11 0.24 1.87 16 8 N -0.66 -16.18 5.34 -303.34 -1.62 -17.80 16 9 C 0.48 14.35 6.91 87.66 0.61 14.96 16 10 O -0.57 -20.03 13.69 -3.09 -0.04 -20.07 16 11 C 0.09 2.60 3.15 44.17 0.14 2.74 16 12 H 0.13 3.08 8.14 -2.38 -0.02 3.06 16 13 N -0.82 -24.21 8.44 -171.80 -1.45 -25.66 16 14 C -0.08 -3.02 4.78 30.59 0.15 -2.88 16 15 C 0.00 0.11 3.93 29.85 0.12 0.23 16 16 C -0.53 -30.79 9.66 25.60 0.25 -30.54 16 17 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 18 C 0.00 0.04 5.47 84.66 0.46 0.50 16 19 N -0.96 -60.89 13.96 21.45 0.30 -60.59 16 20 Si 0.95 44.73 27.47 68.60 1.88 46.61 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.24 -10.71 6.54 99.48 0.65 -10.06 16 24 C -0.09 -1.77 9.96 22.38 0.22 -1.55 16 25 C -0.18 -3.33 9.16 22.38 0.21 -3.13 16 26 H 0.07 0.95 5.31 -2.39 -0.01 0.94 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.08 0.51 8.07 -2.39 -0.02 0.49 16 31 H 0.07 0.63 6.44 -2.39 -0.02 0.61 16 32 H 0.13 2.79 5.73 -2.91 -0.02 2.78 16 33 H 0.11 3.73 6.23 -2.91 -0.02 3.72 16 34 H 0.42 8.02 8.82 -92.71 -0.82 7.20 16 35 H 0.35 10.84 8.58 -89.70 -0.77 10.07 16 36 H 0.35 8.74 9.06 -89.69 -0.81 7.93 16 37 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 39 H 0.03 1.41 6.81 -2.39 -0.02 1.39 16 40 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 41 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 43 H 0.15 1.91 6.29 -2.91 -0.02 1.89 16 Total: -1.00 -75.17 349.80 0.80 -74.37 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: -1.40 Total: 31.63 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 5.69 Total: -15.91 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -5.32 Total: -116.63 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.04 Total: -20.07 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -75.17 0.80 -74.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691562413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.248 kcal (2) G-P(sol) polarization free energy of solvation -75.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds