Wall clock time and date at job start Tue Mar 31 2020 07:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99455 * 2 1 4 4 C 1.39892 * 120.00385 * 179.97438 * 2 1 3 5 5 C 1.38888 * 120.00112 * 180.27509 * 4 2 1 6 6 C 1.38065 * 119.99210 * 180.23352 * 5 4 2 7 7 C 1.38855 * 120.00237 * 359.50902 * 6 5 4 8 8 N 1.40156 * 119.99484 * 180.25325 * 7 6 5 9 9 C 1.34771 * 119.99749 * 144.91223 * 8 7 6 10 10 O 1.21298 * 120.00195 * 4.62422 * 9 8 7 11 11 C 1.50698 * 119.99961 * 184.62088 * 9 8 7 12 12 H 1.09001 * 109.47552 * 40.00159 * 11 9 8 13 13 N 1.46906 * 109.47382 * 160.00300 * 11 9 8 14 14 C 1.53008 * 109.47061 * 279.99944 * 11 9 8 15 15 C 1.52999 * 109.46807 * 174.99603 * 14 11 9 16 16 C 1.50705 * 109.46817 * 180.02562 * 15 14 11 17 17 H 1.07998 * 120.00042 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00105 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00110 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99897 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47378 * 90.00321 * 20 18 16 22 22 H 1.48509 * 109.47381 * 210.00393 * 20 18 16 23 23 H 1.48498 * 109.47226 * 330.00107 * 20 18 16 24 24 C 1.38847 * 120.00984 * 0.23953 * 7 6 5 25 25 C 1.38066 * 120.00474 * 359.97438 * 24 7 6 26 26 H 1.09001 * 109.47436 * 269.99389 * 1 2 3 27 27 H 1.08991 * 109.47449 * 30.00041 * 1 2 3 28 28 H 1.09004 * 109.47039 * 150.00441 * 1 2 3 29 29 H 1.09002 * 109.47233 * 239.99709 * 3 2 1 30 30 H 1.09002 * 109.47153 * 0.02562 * 3 2 1 31 31 H 1.09008 * 109.46977 * 120.00081 * 3 2 1 32 32 H 1.07997 * 120.00505 * 0.02562 * 5 4 2 33 33 H 1.07995 * 120.00011 * 179.79662 * 6 5 4 34 34 H 0.96994 * 120.00192 * 324.91685 * 8 7 6 35 35 H 1.00897 * 110.99479 * 59.99725 * 13 11 9 36 36 H 1.00895 * 111.00123 * 183.95305 * 13 11 9 37 37 H 1.08998 * 109.47049 * 295.00209 * 14 11 9 38 38 H 1.09000 * 109.46634 * 55.00247 * 14 11 9 39 39 H 1.08998 * 109.47812 * 300.00140 * 15 14 11 40 40 H 1.09000 * 109.46997 * 60.00867 * 15 14 11 41 41 H 0.97008 * 120.00187 * 179.97438 * 19 18 16 42 42 H 1.08003 * 120.00144 * 180.02562 * 24 7 6 43 43 H 1.08001 * 120.00055 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1645 -1.2115 0.0005 5 6 3.5534 -1.2114 0.0063 6 6 4.2436 -2.4071 0.0020 7 6 3.5493 -3.6096 0.0021 8 7 4.2502 -4.8234 0.0031 9 6 3.7596 -5.8841 0.6743 10 8 2.6722 -5.8147 1.2072 11 6 4.5621 -7.1566 0.7626 12 1 5.6141 -6.9132 0.9120 13 7 4.0805 -7.9619 1.8930 14 6 4.4019 -7.9517 -0.5348 15 6 5.3129 -9.1803 -0.4958 16 6 5.1556 -9.9631 -1.7739 17 1 4.4736 -9.6190 -2.5374 18 6 5.8814 -11.1191 -1.9681 19 7 5.7444 -11.8020 -3.0837 20 14 7.0604 -11.7147 -0.6472 21 1 6.3418 -12.6181 0.2869 22 1 8.1837 -12.4505 -1.2815 23 1 7.5931 -10.5491 0.1029 24 6 2.1608 -3.6098 0.0016 25 6 1.4702 -2.4143 0.0015 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8901 -0.5138 29 1 2.8241 1.3266 -0.8900 30 1 1.4890 2.0973 0.0005 31 1 2.8241 1.3266 0.8900 32 1 4.0934 -0.2761 0.0108 33 1 5.3236 -2.4072 0.0031 34 1 5.0882 -4.8999 -0.4792 35 1 3.1070 -8.2006 1.7779 36 1 4.6442 -8.7900 2.0131 37 1 3.3651 -8.2713 -0.6394 38 1 4.6756 -7.3232 -1.3822 39 1 6.3498 -8.8607 -0.3913 40 1 5.0392 -9.8088 0.3516 41 1 6.2554 -12.6151 -3.2205 42 1 1.6209 -4.5452 0.0022 43 1 0.3902 -2.4145 0.0016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691562415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:31 Heat of formation + Delta-G solvation = -26.968772 kcal Electronic energy + Delta-G solvation = -22467.747922 eV Core-core repulsion = 19125.715258 eV Total energy + Delta-G solvation = -3342.032663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56424 -40.09556 -37.66473 -36.90967 -35.04982 -34.79711 -32.12853 -32.03609 -30.27207 -28.97039 -28.34032 -26.08920 -24.76978 -23.60158 -22.38913 -21.70408 -20.99290 -19.18480 -18.77808 -18.32952 -17.71800 -16.72300 -16.32044 -16.03064 -15.92262 -15.87759 -15.80631 -15.40641 -14.91110 -14.68215 -14.62425 -14.43883 -14.13773 -13.66158 -13.57710 -13.45521 -13.39844 -13.06470 -12.91853 -12.81575 -12.62628 -12.09919 -11.97557 -11.90508 -11.65767 -11.42900 -11.39182 -10.77446 -10.71660 -10.00124 -9.85583 -9.66226 -8.29314 -7.97281 -6.34966 0.48208 0.53123 1.39441 1.40775 1.52277 1.62348 2.08750 2.30822 2.36925 2.95277 3.06350 3.68373 3.73576 3.95645 4.07027 4.09150 4.17525 4.21242 4.39919 4.45271 4.54205 4.57416 4.63033 4.70718 4.73391 4.81037 4.90288 4.92953 4.95166 5.05407 5.17887 5.31559 5.36402 5.46991 5.51184 5.60837 5.63271 5.96828 6.06448 6.25648 6.39684 6.48975 6.51995 6.55521 6.73743 7.20589 7.29834 8.87505 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.034113 B = 0.002656 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.597877 B =10541.509416 C =10643.658447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.646 5.646 3 C 0.092 3.908 4 C 0.193 3.807 5 C -0.179 4.179 6 C -0.091 4.091 7 C 0.068 3.932 8 N -0.660 5.660 9 C 0.522 3.478 10 O -0.554 6.554 11 C 0.085 3.915 12 H 0.124 0.876 13 N -0.830 5.830 14 C -0.119 4.119 15 C -0.006 4.006 16 C -0.535 4.535 17 H 0.025 0.975 18 C 0.001 3.999 19 N -0.953 5.953 20 Si 0.955 3.045 21 H -0.268 1.268 22 H -0.289 1.289 23 H -0.235 1.235 24 C -0.093 4.093 25 C -0.191 4.191 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.422 0.578 35 H 0.345 0.655 36 H 0.356 0.644 37 H 0.042 0.958 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.024 0.976 41 H 0.266 0.734 42 H 0.112 0.888 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 27.025 8.381 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.358 5.358 3 C -0.050 4.050 4 C 0.090 3.910 5 C -0.202 4.202 6 C -0.112 4.112 7 C -0.027 4.027 8 N -0.306 5.306 9 C 0.310 3.690 10 O -0.431 6.431 11 C -0.030 4.030 12 H 0.142 0.858 13 N -0.362 5.362 14 C -0.159 4.159 15 C -0.043 4.043 16 C -0.573 4.573 17 H 0.044 0.956 18 C -0.196 4.196 19 N -0.594 5.594 20 Si 0.778 3.222 21 H -0.194 1.194 22 H -0.215 1.215 23 H -0.158 1.158 24 C -0.114 4.114 25 C -0.214 4.214 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.260 0.740 35 H 0.159 0.841 36 H 0.172 0.828 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.130 0.870 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.378 27.716 9.151 29.514 hybrid contribution 0.293 -1.775 -1.089 2.103 sum -4.085 25.942 8.062 27.471 Atomic orbital electron populations 1.21776 0.78776 1.03416 1.01474 1.46579 1.05685 1.03090 1.80465 1.21754 0.97566 0.84243 1.01458 1.17985 0.91777 0.86094 0.95122 1.20695 0.91797 0.98701 1.08979 1.20928 1.00737 0.89847 0.99653 1.17771 0.91289 0.85724 1.07882 1.43337 1.26560 1.09358 1.51385 1.20969 0.86358 0.85207 0.76496 1.90621 1.22267 1.83258 1.46961 1.21419 1.00047 0.90538 0.91032 0.85835 1.58738 1.08752 1.26855 1.41880 1.22042 0.99795 0.97479 0.96621 1.19504 0.96191 0.93492 0.95143 1.21446 1.24286 1.08507 1.03033 0.95619 1.26101 0.98882 0.96542 0.98066 1.70084 1.43615 1.17726 1.27976 0.85592 0.78190 0.79534 0.78911 1.19354 1.21460 1.15802 1.21013 0.93459 0.98269 0.98619 1.20674 1.00122 0.90638 1.09969 0.93340 0.89458 0.91859 0.92382 0.89018 0.92610 0.83455 0.83196 0.73960 0.84141 0.82828 0.93950 0.91645 0.94782 0.95761 0.92539 0.86973 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 10.16 127.77 1.30 2.37 16 2 N -0.65 -10.30 3.41 -747.09 -2.55 -12.85 16 3 C 0.09 0.90 9.40 127.77 1.20 2.10 16 4 C 0.19 4.11 6.56 38.16 0.25 4.36 16 5 C -0.18 -3.45 9.31 22.38 0.21 -3.24 16 6 C -0.09 -1.90 9.96 22.38 0.22 -1.68 16 7 C 0.07 1.83 6.30 38.10 0.24 2.07 16 8 N -0.66 -17.18 5.34 -303.35 -1.62 -18.80 16 9 C 0.52 16.59 6.92 87.66 0.61 17.19 16 10 O -0.55 -21.18 13.69 -3.08 -0.04 -21.22 16 11 C 0.08 2.56 3.21 44.17 0.14 2.70 16 12 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 13 N -0.83 -25.27 8.94 -171.78 -1.54 -26.81 16 14 C -0.12 -4.36 4.78 30.60 0.15 -4.21 16 15 C -0.01 -0.25 3.81 29.85 0.11 -0.14 16 16 C -0.53 -29.98 9.66 25.60 0.25 -29.74 16 17 H 0.03 1.61 7.99 -2.91 -0.02 1.59 16 18 C 0.00 0.04 5.47 84.66 0.46 0.50 16 19 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 20 Si 0.95 42.45 27.47 68.60 1.88 44.34 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.24 -9.26 6.54 99.48 0.65 -8.61 16 24 C -0.09 -2.76 8.69 22.37 0.19 -2.57 16 25 C -0.19 -4.78 9.20 22.38 0.21 -4.58 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.09 0.65 7.92 -2.39 -0.02 0.63 16 28 H 0.06 0.84 6.20 -2.39 -0.01 0.83 16 29 H 0.06 0.52 7.96 -2.39 -0.02 0.50 16 30 H 0.09 0.51 7.79 -2.39 -0.02 0.49 16 31 H 0.06 0.52 7.94 -2.38 -0.02 0.50 16 32 H 0.15 2.03 6.73 -2.91 -0.02 2.01 16 33 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 34 H 0.42 8.43 8.82 -92.71 -0.82 7.61 16 35 H 0.35 11.05 8.58 -89.70 -0.77 10.28 16 36 H 0.36 10.10 7.55 -89.70 -0.68 9.42 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.03 1.37 7.20 -2.39 -0.02 1.36 16 40 H 0.02 0.99 6.30 -2.39 -0.02 0.97 16 41 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 42 H 0.11 3.87 6.22 -2.91 -0.02 3.85 16 43 H 0.13 2.88 6.14 -2.91 -0.02 2.86 16 Total: -1.00 -74.08 349.25 0.70 -73.38 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: -1.27 Total: 35.95 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 5.54 Total: -14.86 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -5.41 Total: -117.58 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.04 Total: -21.22 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.34 kcal Total: -74.08 0.70 -73.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691562415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.406 kcal (2) G-P(sol) polarization free energy of solvation -74.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds