Wall clock time and date at job start Tue Mar 31 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47205 * 2 1 4 4 C 1.35542 * 125.67614 * 265.91973 * 3 2 1 5 5 C 1.35450 * 108.86991 * 179.97438 * 4 3 2 6 6 C 1.39835 * 107.86428 * 359.74160 * 5 4 3 7 7 C 1.37645 * 125.68149 * 85.89936 * 3 2 1 8 8 C 1.46678 * 126.23099 * 0.02562 * 7 3 2 9 9 O 1.21694 * 119.99907 * 355.03233 * 8 7 3 10 10 N 1.34777 * 120.00218 * 175.03693 * 8 7 3 11 11 C 1.46497 * 120.00117 * 174.54353 * 10 8 7 12 12 C 1.53035 * 109.46170 * 275.34097 * 11 10 8 13 13 C 1.53201 * 109.31520 * 178.61473 * 12 11 10 14 14 N 1.46922 * 108.77189 * 54.63148 * 13 12 11 15 15 C 1.36940 * 120.62697 * 126.41570 * 14 13 12 16 16 H 1.07997 * 120.00019 * 323.79867 * 15 14 13 17 17 C 1.38806 * 120.00215 * 143.80360 * 15 14 13 18 18 N 1.31628 * 120.00162 * 358.88953 * 17 15 14 19 19 Si 1.86803 * 120.00564 * 178.89603 * 17 15 14 20 20 H 1.48504 * 109.46530 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47448 * 119.99441 * 19 17 15 22 22 H 1.48492 * 109.47237 * 240.00112 * 19 17 15 23 23 C 1.46922 * 118.74541 * 306.39589 * 14 13 12 24 24 C 1.53040 * 109.45975 * 155.26992 * 11 10 8 25 25 H 1.08997 * 109.47341 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47119 * 300.00465 * 1 2 3 27 27 H 1.09004 * 109.46870 * 60.00186 * 1 2 3 28 28 H 1.09006 * 109.46899 * 239.99712 * 2 1 3 29 29 H 1.08997 * 109.46945 * 120.00179 * 2 1 3 30 30 H 1.08002 * 125.56253 * 359.96435 * 4 3 2 31 31 H 1.07997 * 126.06785 * 180.02562 * 5 4 3 32 32 H 1.08001 * 126.45866 * 180.25894 * 6 5 4 33 33 H 0.96997 * 119.99824 * 354.81470 * 10 8 7 34 34 H 1.09006 * 109.46260 * 35.30300 * 11 10 8 35 35 H 1.08997 * 109.50007 * 298.56365 * 12 11 10 36 36 H 1.08993 * 109.49719 * 58.66420 * 12 11 10 37 37 H 1.09000 * 109.58431 * 294.85331 * 13 12 11 38 38 H 1.08996 * 109.70442 * 174.49147 * 13 12 11 39 39 H 0.96998 * 120.00075 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58406 * 293.82138 * 23 14 13 41 41 H 1.09005 * 109.70929 * 173.46567 * 23 14 13 42 42 H 1.09001 * 109.50129 * 301.33934 * 24 11 10 43 43 H 1.09007 * 109.49337 * 61.43714 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3557 2.1003 -1.0982 5 6 2.7611 3.3323 -0.7076 6 6 2.6700 3.3919 0.6864 7 6 2.2106 2.1647 1.1152 8 6 1.9653 1.7685 2.5060 9 8 1.4672 0.6856 2.7512 10 7 2.2914 2.6037 3.5122 11 6 1.9383 2.2611 4.8921 12 6 0.5013 2.7041 5.1758 13 6 0.1239 2.3133 6.6082 14 7 1.1213 2.8742 7.5297 15 6 0.7338 3.6518 8.5882 16 1 -0.1017 4.3281 8.4840 17 6 1.4149 3.5708 9.7949 18 7 2.4194 2.7308 9.9287 19 14 0.9059 4.6538 11.2294 20 1 -0.2422 5.5042 10.8244 21 1 0.5093 3.8002 12.3779 22 1 2.0462 5.5185 11.6258 23 6 2.5424 2.5847 7.2943 24 6 2.8926 2.9724 5.8542 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.3090 1.7484 -2.1183 31 1 3.0914 4.1288 -1.3579 32 1 2.9158 4.2387 1.3101 33 1 2.7564 3.4335 3.3223 34 1 2.0198 1.1830 5.0309 35 1 0.4246 3.7854 5.0616 36 1 -0.1752 2.2150 4.4750 37 1 0.1121 1.2272 6.6995 38 1 -0.8616 2.7111 6.8501 39 1 2.8956 2.6745 10.7719 40 1 2.7277 1.5207 7.4416 41 1 3.1548 3.1617 7.9873 42 1 3.9181 2.6742 5.6363 43 1 2.7935 4.0512 5.7335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706253075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:10 Heat of formation + Delta-G solvation = 25.322889 kcal Electronic energy + Delta-G solvation = -23486.135097 eV Core-core repulsion = 20146.369970 eV Total energy + Delta-G solvation = -3339.765127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46974 -39.18656 -37.16422 -34.71986 -33.98612 -32.16443 -30.32043 -29.75684 -29.43194 -28.66347 -25.08246 -23.74525 -22.89958 -22.16019 -21.39465 -20.48242 -19.72960 -18.97773 -17.83343 -16.72417 -15.89495 -15.61769 -15.29285 -14.82834 -14.52736 -14.29749 -13.94073 -13.84184 -13.56755 -13.45824 -12.94516 -12.67221 -12.57559 -12.42213 -12.36356 -12.28976 -12.07232 -11.46458 -11.35642 -10.98819 -10.86890 -10.77855 -10.42138 -10.25013 -10.03899 -9.90627 -9.72373 -9.50269 -8.85949 -8.73089 -8.46910 -8.25056 -6.54507 -5.79600 -3.32609 1.48384 2.59573 2.66136 3.36316 3.44071 3.46073 3.48669 3.53154 4.48086 4.54422 4.79839 4.87609 4.89135 5.11077 5.24450 5.28017 5.38072 5.43010 5.51261 5.54767 5.62353 5.64728 5.90365 5.95278 5.97157 6.08119 6.11895 6.29712 6.37893 6.55721 6.57607 6.63259 6.67081 6.82705 6.90736 6.96514 7.02092 7.12559 7.37547 7.67830 7.77499 7.80766 8.39771 8.51956 9.24158 9.82771 10.43904 11.28400 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.034751 B = 0.003215 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.534527 B = 8706.265713 C = 9008.799626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.408 5.408 4 C 0.008 3.992 5 C -0.209 4.209 6 C -0.146 4.146 7 C -0.044 4.044 8 C 0.583 3.417 9 O -0.551 6.551 10 N -0.711 5.711 11 C 0.153 3.847 12 C -0.139 4.139 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.254 4.254 16 H 0.063 0.937 17 C 0.009 3.991 18 N -0.904 5.904 19 Si 0.904 3.096 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.176 3.824 24 C -0.148 4.148 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.165 0.835 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.398 0.602 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.020 0.980 38 H 0.056 0.944 39 H 0.254 0.746 40 H 0.020 0.980 41 H 0.095 0.905 42 H 0.054 0.946 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 -1.386 -21.507 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.081 5.081 4 C -0.127 4.127 5 C -0.233 4.233 6 C -0.172 4.172 7 C -0.158 4.158 8 C 0.371 3.629 9 O -0.431 6.431 10 N -0.360 5.360 11 C 0.050 3.950 12 C -0.179 4.179 13 C 0.021 3.979 14 N -0.316 5.316 15 C -0.384 4.384 16 H 0.081 0.919 17 C -0.190 4.190 18 N -0.548 5.548 19 Si 0.734 3.266 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.216 1.216 23 C 0.049 3.951 24 C -0.188 4.188 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.182 0.818 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.232 0.768 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.113 0.887 42 H 0.073 0.927 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.619 -2.572 -21.110 21.275 hybrid contribution 0.032 0.980 0.501 1.101 sum 0.651 -1.592 -20.609 20.681 Atomic orbital electron populations 1.22061 0.93959 1.03024 1.02944 1.22016 0.96122 0.79590 1.04649 1.44089 1.47090 1.11744 1.05164 1.21967 1.06035 0.93155 0.91567 1.20790 1.09930 0.97434 0.95135 1.21358 1.04362 0.95972 0.95532 1.20259 1.14378 0.93129 0.88065 1.17031 0.78273 0.84246 0.83396 1.90776 1.45307 1.22002 1.84993 1.46036 1.59249 1.23563 1.07190 1.21076 0.95319 1.00580 0.78011 1.22391 0.95349 1.00842 0.99346 1.20889 0.93383 0.95844 0.87755 1.44012 1.00363 1.57866 1.29402 1.19193 1.15300 1.15291 0.88652 0.91891 1.25340 0.98629 0.97750 0.97315 1.69927 1.22326 1.37713 1.24874 0.86194 0.78088 0.79660 0.82687 1.20201 1.21527 1.21616 1.20793 0.86254 0.98354 0.89688 1.22580 0.97004 1.00011 0.99188 0.90786 0.91136 0.92580 0.89634 0.87697 0.81769 0.84218 0.83981 0.76814 0.89880 0.92294 0.92953 0.96228 0.92563 0.93554 0.96212 0.88711 0.92744 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.19 37.16 0.38 -1.21 16 2 C 0.10 0.98 6.11 -4.04 -0.02 0.96 16 3 N -0.41 -4.77 2.76 -112.88 -0.31 -5.08 16 4 C 0.01 0.08 11.37 -16.91 -0.19 -0.12 16 5 C -0.21 -2.11 10.81 -39.98 -0.43 -2.54 16 6 C -0.15 -1.69 10.35 -39.12 -0.40 -2.09 16 7 C -0.04 -0.60 6.88 -81.98 -0.56 -1.16 16 8 C 0.58 9.19 7.73 -12.85 -0.10 9.09 16 9 O -0.55 -10.10 13.99 5.19 0.07 -10.03 16 10 N -0.71 -10.62 5.05 -55.08 -0.28 -10.90 16 11 C 0.15 2.72 2.46 -67.89 -0.17 2.56 16 12 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 13 C 0.15 3.22 6.52 -3.71 -0.02 3.20 16 14 N -0.59 -14.90 2.98 -172.32 -0.51 -15.42 16 15 C -0.25 -6.96 9.54 -15.06 -0.14 -7.10 16 16 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 17 C 0.01 0.24 5.22 -17.43 -0.09 0.14 16 18 N -0.90 -25.96 10.91 55.49 0.61 -25.35 16 19 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.18 4.14 5.22 -3.71 -0.02 4.12 16 24 C -0.15 -2.75 5.55 -26.61 -0.15 -2.89 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.90 7.71 -51.93 -0.40 0.50 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.61 8.13 -51.93 -0.42 0.18 16 29 H 0.10 1.27 6.68 -51.93 -0.35 0.92 16 30 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.14 1.37 7.49 -52.49 -0.39 0.98 16 33 H 0.40 4.97 7.55 -40.82 -0.31 4.66 16 34 H 0.08 1.65 7.51 -51.93 -0.39 1.26 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 2.49 6.18 -51.93 -0.32 2.17 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 346.74 15.07 5.23 5.23 Total: -1.00 -31.40 346.74 -9.07 -40.48 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.77 Total: 4.36 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.08 Total: 0.22 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.50 Total: -56.75 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.40 -9.07 -40.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706253075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.798 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds