Wall clock time and date at job start Tue Mar 31 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.47205 * 2 1 4 4 C 1.35542 * 125.67614 * 265.91973 * 3 2 1 5 5 C 1.35450 * 108.86991 * 179.97438 * 4 3 2 6 6 C 1.39835 * 107.86428 * 359.74160 * 5 4 3 7 7 C 1.37645 * 125.68149 * 85.89936 * 3 2 1 8 8 C 1.46678 * 126.23099 * 0.02562 * 7 3 2 9 9 O 1.21694 * 119.99907 * 355.03233 * 8 7 3 10 10 N 1.34777 * 120.00218 * 175.03693 * 8 7 3 11 11 C 1.46497 * 120.00117 * 174.54353 * 10 8 7 12 12 C 1.53035 * 109.46170 * 275.34097 * 11 10 8 13 13 C 1.53201 * 109.31520 * 178.61473 * 12 11 10 14 14 N 1.46922 * 108.77189 * 54.63148 * 13 12 11 15 15 C 1.36940 * 120.62697 * 126.41570 * 14 13 12 16 16 H 1.07997 * 120.00019 * 323.79867 * 15 14 13 17 17 C 1.38806 * 120.00215 * 143.80360 * 15 14 13 18 18 N 1.31628 * 120.00162 * 358.88953 * 17 15 14 19 19 Si 1.86803 * 120.00564 * 178.89603 * 17 15 14 20 20 H 1.48504 * 109.46530 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47448 * 119.99441 * 19 17 15 22 22 H 1.48492 * 109.47237 * 240.00112 * 19 17 15 23 23 C 1.46922 * 118.74541 * 306.39589 * 14 13 12 24 24 C 1.53040 * 109.45975 * 155.26992 * 11 10 8 25 25 H 1.08997 * 109.47341 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47119 * 300.00465 * 1 2 3 27 27 H 1.09004 * 109.46870 * 60.00186 * 1 2 3 28 28 H 1.09006 * 109.46899 * 239.99712 * 2 1 3 29 29 H 1.08997 * 109.46945 * 120.00179 * 2 1 3 30 30 H 1.08002 * 125.56253 * 359.96435 * 4 3 2 31 31 H 1.07997 * 126.06785 * 180.02562 * 5 4 3 32 32 H 1.08001 * 126.45866 * 180.25894 * 6 5 4 33 33 H 0.96997 * 119.99824 * 354.81470 * 10 8 7 34 34 H 1.09006 * 109.46260 * 35.30300 * 11 10 8 35 35 H 1.08997 * 109.50007 * 298.56365 * 12 11 10 36 36 H 1.08993 * 109.49719 * 58.66420 * 12 11 10 37 37 H 1.09000 * 109.58431 * 294.85331 * 13 12 11 38 38 H 1.08996 * 109.70442 * 174.49147 * 13 12 11 39 39 H 0.96998 * 120.00075 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58406 * 293.82138 * 23 14 13 41 41 H 1.09005 * 109.70929 * 173.46567 * 23 14 13 42 42 H 1.09001 * 109.50129 * 301.33934 * 24 11 10 43 43 H 1.09007 * 109.49337 * 61.43714 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3557 2.1003 -1.0982 5 6 2.7611 3.3323 -0.7076 6 6 2.6700 3.3919 0.6864 7 6 2.2106 2.1647 1.1152 8 6 1.9653 1.7685 2.5060 9 8 1.4672 0.6856 2.7512 10 7 2.2914 2.6037 3.5122 11 6 1.9383 2.2611 4.8921 12 6 0.5013 2.7041 5.1758 13 6 0.1239 2.3133 6.6082 14 7 1.1213 2.8742 7.5297 15 6 0.7338 3.6518 8.5882 16 1 -0.1017 4.3281 8.4840 17 6 1.4149 3.5708 9.7949 18 7 2.4194 2.7308 9.9287 19 14 0.9059 4.6538 11.2294 20 1 -0.2422 5.5042 10.8244 21 1 0.5093 3.8002 12.3779 22 1 2.0462 5.5185 11.6258 23 6 2.5424 2.5847 7.2943 24 6 2.8926 2.9724 5.8542 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.3090 1.7484 -2.1183 31 1 3.0914 4.1288 -1.3579 32 1 2.9158 4.2387 1.3101 33 1 2.7564 3.4335 3.3223 34 1 2.0198 1.1830 5.0309 35 1 0.4246 3.7854 5.0616 36 1 -0.1752 2.2150 4.4750 37 1 0.1121 1.2272 6.6995 38 1 -0.8616 2.7111 6.8501 39 1 2.8956 2.6745 10.7719 40 1 2.7277 1.5207 7.4416 41 1 3.1548 3.1617 7.9873 42 1 3.9181 2.6742 5.6363 43 1 2.7935 4.0512 5.7335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706253075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:09 Heat of formation + Delta-G solvation = 6.559941 kcal Electronic energy + Delta-G solvation = -23486.948719 eV Core-core repulsion = 20146.369970 eV Total energy + Delta-G solvation = -3340.578749 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.34231 -40.48927 -38.77474 -36.10785 -35.03936 -33.90460 -31.93289 -31.42262 -30.22324 -29.86705 -26.92430 -24.64449 -24.24571 -23.85526 -22.77308 -21.38665 -21.18738 -20.26322 -19.00626 -18.45149 -17.22916 -16.85449 -16.66199 -16.26325 -15.62952 -15.41861 -15.37021 -15.30715 -14.92692 -14.68965 -14.52674 -14.23601 -14.09323 -13.43685 -13.28012 -13.17414 -13.10226 -12.88330 -12.84088 -12.73249 -12.55096 -12.23126 -12.10293 -11.98761 -11.89939 -11.60673 -11.36728 -10.97370 -10.56796 -10.07505 -9.66954 -9.12841 -8.58351 -7.88178 -5.45281 0.52159 1.47451 1.49077 1.59649 1.71071 1.87237 2.39299 2.42869 2.50065 3.29715 3.65154 3.76690 3.82436 3.93041 4.05182 4.12140 4.19050 4.31771 4.37786 4.45668 4.47582 4.50385 4.64102 4.76242 4.80986 4.85758 4.87894 5.00065 5.03156 5.14732 5.17109 5.21254 5.28633 5.32047 5.49049 5.52305 5.64777 5.74179 5.87513 6.05651 6.38249 6.44253 6.59786 7.16800 7.22422 7.81779 8.38508 9.17904 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.034751 B = 0.003215 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.534527 B = 8706.265713 C = 9008.799626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.095 3.905 3 N -0.415 5.415 4 C 0.024 3.976 5 C -0.220 4.220 6 C -0.139 4.139 7 C -0.086 4.086 8 C 0.581 3.419 9 O -0.586 6.586 10 N -0.702 5.702 11 C 0.166 3.834 12 C -0.123 4.123 13 C 0.147 3.853 14 N -0.610 5.610 15 C -0.268 4.268 16 H 0.065 0.935 17 C -0.043 4.043 18 N -0.934 5.934 19 Si 0.971 3.029 20 H -0.266 1.266 21 H -0.292 1.292 22 H -0.287 1.287 23 C 0.181 3.819 24 C -0.130 4.130 25 H 0.088 0.912 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.077 0.923 30 H 0.203 0.797 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.412 0.588 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.007 0.993 38 H 0.058 0.942 39 H 0.252 0.748 40 H -0.007 1.007 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 -0.068 -24.279 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.026 4.026 3 N -0.089 5.089 4 C -0.112 4.112 5 C -0.243 4.243 6 C -0.166 4.166 7 C -0.199 4.199 8 C 0.370 3.630 9 O -0.468 6.468 10 N -0.352 5.352 11 C 0.062 3.938 12 C -0.163 4.163 13 C 0.020 3.980 14 N -0.334 5.334 15 C -0.398 4.398 16 H 0.083 0.917 17 C -0.239 4.239 18 N -0.580 5.580 19 Si 0.799 3.201 20 H -0.190 1.190 21 H -0.219 1.219 22 H -0.214 1.214 23 C 0.055 3.945 24 C -0.170 4.170 25 H 0.106 0.894 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.140 0.860 29 H 0.096 0.904 30 H 0.220 0.780 31 H 0.183 0.817 32 H 0.174 0.826 33 H 0.249 0.751 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.011 0.989 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.704 -1.229 -23.911 23.953 hybrid contribution -0.001 0.530 1.255 1.363 sum 0.703 -0.700 -22.655 22.677 Atomic orbital electron populations 1.21999 0.93920 1.03631 1.01740 1.22093 0.96136 0.79258 1.05082 1.44297 1.47180 1.12185 1.05235 1.22686 1.03340 0.92694 0.92483 1.21175 1.10019 0.98460 0.94680 1.21698 1.02698 0.95463 0.96742 1.20029 1.17888 0.94679 0.87316 1.17411 0.77407 0.83613 0.84532 1.90756 1.46913 1.23496 1.85645 1.45724 1.59496 1.24222 1.05803 1.20658 0.94626 0.98940 0.79595 1.22180 0.95970 1.01139 0.97035 1.20957 0.92966 0.94984 0.89051 1.44251 1.01404 1.58005 1.29745 1.19504 1.15217 1.15534 0.89517 0.91723 1.26094 0.98738 0.99339 0.99742 1.70104 1.23304 1.39372 1.25183 0.85150 0.77913 0.77923 0.79116 1.19003 1.21901 1.21396 1.20571 0.85466 0.96217 0.92231 1.22297 0.98225 1.00547 0.95901 0.89371 0.94789 0.91082 0.85968 0.90432 0.78001 0.81740 0.82565 0.75122 0.92315 0.91557 0.92511 0.97468 0.92321 0.93917 0.98874 0.91541 0.90716 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 10.19 71.98 0.73 -2.15 16 2 C 0.09 1.78 6.11 86.38 0.53 2.31 16 3 N -0.42 -8.88 2.76 -511.03 -1.41 -10.29 16 4 C 0.02 0.37 11.37 83.48 0.95 1.32 16 5 C -0.22 -3.64 10.81 22.01 0.24 -3.41 16 6 C -0.14 -2.88 10.35 22.57 0.23 -2.65 16 7 C -0.09 -2.23 6.88 40.35 0.28 -1.95 16 8 C 0.58 18.29 7.73 86.45 0.67 18.96 16 9 O -0.59 -22.15 13.99 -4.33 -0.06 -22.21 16 10 N -0.70 -20.51 5.05 -446.38 -2.26 -22.77 16 11 C 0.17 5.93 2.46 45.02 0.11 6.04 16 12 C -0.12 -4.57 5.65 30.67 0.17 -4.39 16 13 C 0.15 6.50 6.52 86.37 0.56 7.06 16 14 N -0.61 -31.32 2.98 -699.10 -2.08 -33.41 16 15 C -0.27 -14.80 9.54 84.03 0.80 -14.00 16 16 H 0.07 3.49 7.83 -2.91 -0.02 3.47 16 17 C -0.04 -2.42 5.22 84.86 0.44 -1.97 16 18 N -0.93 -55.09 10.91 21.65 0.24 -54.85 16 19 Si 0.97 44.64 29.55 68.60 2.03 46.67 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 C 0.18 8.84 5.22 86.36 0.45 9.29 16 24 C -0.13 -4.80 5.55 30.67 0.17 -4.63 16 25 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.03 0.87 7.71 -2.39 -0.02 0.85 16 27 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.12 1.35 8.13 -2.38 -0.02 1.33 16 29 H 0.08 1.90 6.68 -2.39 -0.02 1.89 16 30 H 0.20 1.47 8.06 -2.91 -0.02 1.44 16 31 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.16 2.60 7.49 -2.91 -0.02 2.58 16 33 H 0.41 9.62 7.55 -92.71 -0.70 8.92 16 34 H 0.06 2.41 7.51 -2.38 -0.02 2.40 16 35 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 37 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 39 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 40 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.07 3.61 6.18 -2.38 -0.01 3.60 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -70.21 346.74 3.09 -67.11 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.30 Total: 19.92 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 6.34 Total: 9.82 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -5.51 Total: -121.32 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.06 Total: -22.21 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -70.21 3.09 -67.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706253075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.674 kcal (2) G-P(sol) polarization free energy of solvation -70.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds