Wall clock time and date at job start Tue Mar 31 2020 06:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47216 * 2 1 4 4 C 1.46506 * 119.99753 * 90.00140 * 3 2 1 5 5 C 1.53001 * 109.46688 * 90.00118 * 4 3 2 6 6 C 1.50706 * 109.46726 * 179.97438 * 5 4 3 7 7 C 1.38232 * 119.61338 * 125.00016 * 6 5 4 8 8 C 1.38624 * 119.15705 * 179.97438 * 7 6 5 9 9 C 1.38675 * 118.42145 * 0.02562 * 8 7 6 10 10 C 1.38178 * 119.16507 * 359.97438 * 9 8 7 11 11 N 1.31847 * 119.62208 * 304.72894 * 6 5 4 12 12 C 1.34775 * 120.00384 * 270.00973 * 3 2 1 13 13 O 1.21585 * 119.99926 * 180.02562 * 12 3 2 14 14 N 1.34774 * 119.99763 * 359.97438 * 12 3 2 15 15 C 1.46501 * 120.00054 * 180.02562 * 14 12 3 16 16 C 1.52998 * 109.47325 * 179.97438 * 15 14 12 17 17 C 1.50698 * 109.46969 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00612 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99843 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99899 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99882 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47172 * 90.00296 * 21 19 17 23 23 H 1.48505 * 109.47204 * 209.99887 * 21 19 17 24 24 H 1.48497 * 109.47650 * 330.00243 * 21 19 17 25 25 H 1.08998 * 109.47690 * 59.99511 * 1 2 3 26 26 H 1.08999 * 109.47254 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47008 * 299.99414 * 1 2 3 28 28 H 1.08998 * 109.46570 * 240.00417 * 2 1 3 29 29 H 1.08998 * 109.47164 * 120.00498 * 2 1 3 30 30 H 1.08999 * 109.47216 * 330.00195 * 4 3 2 31 31 H 1.09000 * 109.47021 * 209.99931 * 4 3 2 32 32 H 1.08999 * 109.47230 * 60.00085 * 5 4 3 33 33 H 1.09000 * 109.47236 * 299.99680 * 5 4 3 34 34 H 1.07995 * 120.42020 * 359.95593 * 7 6 5 35 35 H 1.08003 * 120.79128 * 180.02562 * 8 7 6 36 36 H 1.08003 * 120.41790 * 180.02562 * 9 8 7 37 37 H 1.08000 * 119.61563 * 180.02562 * 10 9 8 38 38 H 0.97000 * 120.00314 * 0.02562 * 14 12 3 39 39 H 1.09002 * 109.46858 * 299.99740 * 15 14 12 40 40 H 1.09005 * 109.47144 * 59.99577 * 15 14 12 41 41 H 1.09002 * 109.46969 * 299.99707 * 16 15 14 42 42 H 1.09003 * 109.46824 * 59.99628 * 16 15 14 43 43 H 0.97001 * 119.99938 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.7076 1.8312 1.7103 6 6 3.9590 2.5421 3.0152 7 6 4.4386 1.8309 4.0992 8 6 4.6669 2.4944 5.2947 9 6 4.4028 3.8544 5.3558 10 6 3.9246 4.4986 4.2308 11 7 3.7241 3.8362 3.1082 12 6 2.2429 2.0166 -1.1671 13 8 2.6486 3.1628 -1.1670 14 7 2.0185 1.3812 -2.3343 15 6 2.2631 2.0717 -3.6031 16 6 1.9326 1.1341 -4.7660 17 6 2.1835 1.8447 -6.0710 18 1 2.5432 2.8630 -6.0711 19 6 1.9549 1.1943 -7.2652 20 7 1.5174 -0.0459 -7.2652 21 14 2.2667 2.0749 -8.8828 22 1 3.6697 1.8424 -9.3107 23 1 1.3402 1.5507 -9.9183 24 1 2.0381 3.5314 -8.7058 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.5818 1.6876 2.0285 31 1 2.0956 3.1410 1.1385 32 1 4.3884 2.2154 0.9507 33 1 3.8746 0.7620 1.8407 34 1 4.6325 0.7718 4.0158 35 1 5.0417 1.9647 6.1581 36 1 4.5695 4.4032 6.2709 37 1 3.7168 5.5577 4.2701 38 1 1.6952 0.4667 -2.3344 39 1 1.6328 2.9592 -3.6610 40 1 3.3111 2.3660 -3.6605 41 1 2.5631 0.2469 -4.7079 42 1 0.8847 0.8395 -4.7087 43 1 1.3570 -0.5036 -8.1053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753264247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:51 Heat of formation + Delta-G solvation = -5.352228 kcal Electronic energy + Delta-G solvation = -22439.978445 eV Core-core repulsion = 19098.883146 eV Total energy + Delta-G solvation = -3341.095300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.48971 -39.77175 -36.17547 -34.85438 -33.76394 -32.70253 -32.52126 -30.73300 -29.74552 -28.33021 -25.08659 -24.13979 -23.61642 -23.16531 -21.72079 -20.86839 -19.34262 -17.73606 -17.15632 -16.48871 -16.40084 -16.11415 -15.59406 -15.16757 -14.57884 -14.46890 -14.11017 -13.91828 -13.80180 -13.53868 -13.41952 -13.13117 -13.03062 -12.48539 -12.25527 -12.20573 -12.03068 -11.73678 -11.26226 -11.10487 -11.00069 -10.97001 -10.59448 -10.26684 -10.12179 -9.79252 -9.61452 -9.47765 -9.25189 -9.21036 -8.64193 -8.42327 -8.12513 -6.05980 -4.08129 0.85596 1.03812 2.96113 3.32170 3.38124 3.43076 3.55120 3.67255 4.09743 4.32480 4.47171 4.50896 4.59897 4.79438 4.85950 4.88465 5.04280 5.10146 5.26338 5.31149 5.31998 5.34964 5.45410 5.47012 5.69742 5.76248 5.80775 5.90612 5.99757 6.09323 6.16540 6.35302 6.45977 6.46711 6.72011 6.83569 7.08913 7.25276 7.60588 7.67855 7.81957 7.93681 8.30005 8.45931 8.97071 9.08494 9.56340 11.05728 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028301 B = 0.002622 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.131857 B =10675.503494 C =11291.941974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 N -0.636 5.636 4 C 0.147 3.853 5 C -0.088 4.088 6 C 0.140 3.860 7 C -0.172 4.172 8 C -0.075 4.075 9 C -0.184 4.184 10 C 0.104 3.896 11 N -0.475 5.475 12 C 0.699 3.301 13 O -0.590 6.590 14 N -0.739 5.739 15 C 0.139 3.861 16 C 0.014 3.986 17 C -0.519 4.519 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.155 0.845 38 H 0.392 0.608 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 -0.786 26.485 26.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 N -0.374 5.374 4 C 0.022 3.978 5 C -0.127 4.127 6 C 0.001 3.999 7 C -0.192 4.192 8 C -0.101 4.101 9 C -0.204 4.204 10 C -0.054 4.054 11 N -0.184 5.184 12 C 0.401 3.599 13 O -0.468 6.468 14 N -0.394 5.394 15 C 0.016 3.984 16 C -0.024 4.024 17 C -0.558 4.558 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.173 0.827 38 H 0.227 0.773 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.423 0.377 25.576 25.693 hybrid contribution 0.353 -0.619 -0.050 0.714 sum 2.776 -0.242 25.526 25.678 Atomic orbital electron populations 1.22240 0.95978 1.02208 1.02813 1.21467 0.94483 0.82943 1.02883 1.47222 1.70950 1.14182 1.05040 1.21085 0.93582 0.99537 0.83558 1.20992 0.99667 0.99052 0.92991 1.21237 0.93538 0.89869 0.95216 1.22008 1.02002 1.01456 0.93748 1.21572 0.96238 0.94557 0.97737 1.22139 1.02193 0.95608 1.00435 1.22820 0.94283 1.00294 0.87958 1.67562 1.15335 1.08700 1.26825 1.16032 0.78847 0.84596 0.80469 1.90903 1.52968 1.16736 1.86230 1.45685 1.70903 1.17456 1.05327 1.21580 1.00053 0.96202 0.80545 1.19314 0.97335 0.94620 0.91120 1.21062 1.44654 0.99687 0.90367 0.92222 1.24998 0.95040 0.94926 0.99383 1.69958 1.45651 1.11007 1.26787 0.86514 0.78056 0.79976 0.83016 1.20588 1.21215 1.19721 0.91913 0.91536 0.92495 0.90530 0.90515 0.91340 0.88695 0.89120 0.90401 0.84845 0.84980 0.84962 0.82735 0.77298 0.92824 0.92851 0.96063 0.96034 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.24 37.16 0.38 -1.33 16 2 C 0.11 1.09 5.89 -4.04 -0.02 1.07 16 3 N -0.64 -8.80 2.47 -179.42 -0.44 -9.24 16 4 C 0.15 1.85 5.27 -4.04 -0.02 1.82 16 5 C -0.09 -1.00 5.94 -27.88 -0.17 -1.17 16 6 C 0.14 1.55 6.17 -82.58 -0.51 1.04 16 7 C -0.17 -1.47 9.71 -39.44 -0.38 -1.85 16 8 C -0.08 -0.55 10.18 -39.28 -0.40 -0.95 16 9 C -0.18 -1.38 10.11 -39.44 -0.40 -1.77 16 10 C 0.10 0.99 11.18 -17.55 -0.20 0.80 16 11 N -0.48 -5.93 9.89 -9.47 -0.09 -6.03 16 12 C 0.70 12.96 8.28 -86.92 -0.72 12.24 16 13 O -0.59 -13.32 15.92 5.29 0.08 -13.23 16 14 N -0.74 -13.74 5.42 -65.22 -0.35 -14.09 16 15 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 16 C 0.01 0.34 5.09 -27.89 -0.14 0.20 16 17 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 18 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 21 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.80 6.36 -51.93 -0.33 0.47 16 29 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 30 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.09 1.48 7.23 -51.93 -0.38 1.11 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 34 H 0.13 0.84 7.95 -52.49 -0.42 0.42 16 35 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 36 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.39 6.39 6.20 -40.82 -0.25 6.14 16 39 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 363.21 15.07 5.47 5.47 Total: -1.00 -34.15 363.21 -9.45 -43.59 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.82 Total: 2.71 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -3.01 Total: -0.21 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.15 Total: -54.95 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.15 -9.45 -43.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753264247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.241 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds