Wall clock time and date at job start Tue Mar 31 2020 06:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47216 * 2 1 4 4 C 1.46506 * 119.99753 * 90.00140 * 3 2 1 5 5 C 1.53001 * 109.46688 * 90.00118 * 4 3 2 6 6 C 1.50706 * 109.46726 * 179.97438 * 5 4 3 7 7 C 1.38232 * 119.61338 * 125.00016 * 6 5 4 8 8 C 1.38624 * 119.15705 * 179.97438 * 7 6 5 9 9 C 1.38675 * 118.42145 * 0.02562 * 8 7 6 10 10 C 1.38178 * 119.16507 * 359.97438 * 9 8 7 11 11 N 1.31847 * 119.62208 * 304.72894 * 6 5 4 12 12 C 1.34775 * 120.00384 * 270.00973 * 3 2 1 13 13 O 1.21585 * 119.99926 * 180.02562 * 12 3 2 14 14 N 1.34774 * 119.99763 * 359.97438 * 12 3 2 15 15 C 1.46501 * 120.00054 * 180.02562 * 14 12 3 16 16 C 1.52998 * 109.47325 * 179.97438 * 15 14 12 17 17 C 1.50698 * 109.46969 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00612 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99843 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99899 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99882 * 180.02562 * 19 17 16 22 22 H 1.48510 * 109.47172 * 90.00296 * 21 19 17 23 23 H 1.48505 * 109.47204 * 209.99887 * 21 19 17 24 24 H 1.48497 * 109.47650 * 330.00243 * 21 19 17 25 25 H 1.08998 * 109.47690 * 59.99511 * 1 2 3 26 26 H 1.08999 * 109.47254 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47008 * 299.99414 * 1 2 3 28 28 H 1.08998 * 109.46570 * 240.00417 * 2 1 3 29 29 H 1.08998 * 109.47164 * 120.00498 * 2 1 3 30 30 H 1.08999 * 109.47216 * 330.00195 * 4 3 2 31 31 H 1.09000 * 109.47021 * 209.99931 * 4 3 2 32 32 H 1.08999 * 109.47230 * 60.00085 * 5 4 3 33 33 H 1.09000 * 109.47236 * 299.99680 * 5 4 3 34 34 H 1.07995 * 120.42020 * 359.95593 * 7 6 5 35 35 H 1.08003 * 120.79128 * 180.02562 * 8 7 6 36 36 H 1.08003 * 120.41790 * 180.02562 * 9 8 7 37 37 H 1.08000 * 119.61563 * 180.02562 * 10 9 8 38 38 H 0.97000 * 120.00314 * 0.02562 * 14 12 3 39 39 H 1.09002 * 109.46858 * 299.99740 * 15 14 12 40 40 H 1.09005 * 109.47144 * 59.99577 * 15 14 12 41 41 H 1.09002 * 109.46969 * 299.99707 * 16 15 14 42 42 H 1.09003 * 109.46824 * 59.99628 * 16 15 14 43 43 H 0.97001 * 119.99938 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.7076 1.8312 1.7103 6 6 3.9590 2.5421 3.0152 7 6 4.4386 1.8309 4.0992 8 6 4.6669 2.4944 5.2947 9 6 4.4028 3.8544 5.3558 10 6 3.9246 4.4986 4.2308 11 7 3.7241 3.8362 3.1082 12 6 2.2429 2.0166 -1.1671 13 8 2.6486 3.1628 -1.1670 14 7 2.0185 1.3812 -2.3343 15 6 2.2631 2.0717 -3.6031 16 6 1.9326 1.1341 -4.7660 17 6 2.1835 1.8447 -6.0710 18 1 2.5432 2.8630 -6.0711 19 6 1.9549 1.1943 -7.2652 20 7 1.5174 -0.0459 -7.2652 21 14 2.2667 2.0749 -8.8828 22 1 3.6697 1.8424 -9.3107 23 1 1.3402 1.5507 -9.9183 24 1 2.0381 3.5314 -8.7058 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.5818 1.6876 2.0285 31 1 2.0956 3.1410 1.1385 32 1 4.3884 2.2154 0.9507 33 1 3.8746 0.7620 1.8407 34 1 4.6325 0.7718 4.0158 35 1 5.0417 1.9647 6.1581 36 1 4.5695 4.4032 6.2709 37 1 3.7168 5.5577 4.2701 38 1 1.6952 0.4667 -2.3344 39 1 1.6328 2.9592 -3.6610 40 1 3.3111 2.3660 -3.6605 41 1 2.5631 0.2469 -4.7079 42 1 0.8847 0.8395 -4.7087 43 1 1.3570 -0.5036 -8.1053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753264247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:50 Heat of formation + Delta-G solvation = -26.967380 kcal Electronic energy + Delta-G solvation = -22440.915749 eV Core-core repulsion = 19098.883146 eV Total energy + Delta-G solvation = -3342.032603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.41706 -40.92894 -37.45526 -36.57120 -35.04004 -34.29591 -33.22812 -31.62209 -31.52299 -29.42613 -26.81624 -25.22620 -24.32483 -24.26502 -22.93759 -22.38711 -20.76330 -18.99074 -18.49309 -17.88585 -17.31794 -17.15452 -16.69843 -16.49777 -16.25129 -15.62363 -15.44094 -15.21564 -14.93193 -14.67715 -14.34750 -14.26964 -14.09347 -13.78590 -13.63287 -13.21430 -13.09685 -12.92831 -12.80977 -12.52658 -12.44202 -12.24340 -12.07886 -11.97637 -11.64819 -11.45710 -11.10446 -10.77480 -10.59871 -10.33617 -10.15927 -9.91223 -9.45714 -8.23650 -6.33730 0.19759 0.42291 1.41768 1.42524 1.53900 1.69707 2.16382 2.41112 2.88697 3.04095 3.10863 3.42495 3.80791 4.00734 4.07122 4.10651 4.18147 4.28968 4.32094 4.42344 4.44731 4.51432 4.53351 4.58384 4.69036 4.83332 4.85438 4.88862 4.94767 5.00917 5.10938 5.27952 5.31218 5.32436 5.35599 5.52085 5.59077 5.63054 5.79306 5.85414 5.96743 6.17770 6.78714 7.02399 7.14045 7.35218 7.60099 8.88298 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028301 B = 0.002622 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.131857 B =10675.503494 C =11291.941974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 N -0.625 5.625 4 C 0.149 3.851 5 C -0.077 4.077 6 C 0.112 3.888 7 C -0.168 4.168 8 C -0.075 4.075 9 C -0.175 4.175 10 C 0.081 3.919 11 N -0.521 5.521 12 C 0.695 3.305 13 O -0.637 6.637 14 N -0.733 5.733 15 C 0.160 3.840 16 C 0.027 3.973 17 C -0.547 4.547 18 H 0.057 0.943 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.965 3.035 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.268 1.268 25 H 0.035 0.965 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.108 0.892 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.405 0.595 39 H 0.040 0.960 40 H 0.041 0.959 41 H 0.009 0.991 42 H 0.008 0.992 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 -2.103 28.550 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.361 5.361 4 C 0.026 3.974 5 C -0.117 4.117 6 C -0.025 4.025 7 C -0.188 4.188 8 C -0.101 4.101 9 C -0.195 4.195 10 C -0.076 4.076 11 N -0.231 5.231 12 C 0.397 3.603 13 O -0.519 6.519 14 N -0.389 5.389 15 C 0.035 3.965 16 C -0.011 4.011 17 C -0.585 4.585 18 H 0.075 0.925 19 C -0.191 4.191 20 N -0.565 5.565 21 Si 0.790 3.210 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.192 1.192 25 H 0.054 0.946 26 H 0.109 0.891 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.134 0.866 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.177 0.823 35 H 0.184 0.816 36 H 0.180 0.820 37 H 0.183 0.817 38 H 0.242 0.758 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.026 0.974 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.756 -0.986 27.689 27.844 hybrid contribution 0.235 -0.223 -0.560 0.647 sum 2.991 -1.210 27.130 27.321 Atomic orbital electron populations 1.22206 0.95372 1.03459 1.01756 1.21802 0.94925 0.80760 1.04770 1.47267 1.69614 1.15421 1.03786 1.21133 0.95479 0.97486 0.83312 1.20859 0.97542 1.00705 0.92550 1.21241 0.95621 0.89871 0.95808 1.22269 1.00677 1.02610 0.93227 1.22030 0.95188 0.94564 0.98321 1.22489 1.00267 0.96096 1.00602 1.23150 0.95157 1.01077 0.88205 1.67463 1.16935 1.09952 1.28732 1.16201 0.78546 0.84123 0.81449 1.90869 1.55019 1.18963 1.87051 1.45369 1.71237 1.17879 1.04425 1.21065 0.98851 0.95190 0.81356 1.19101 0.96046 0.94380 0.91542 1.21447 1.45163 0.99971 0.91920 0.92480 1.25863 0.94546 0.95687 1.03023 1.70055 1.46130 1.12276 1.27991 0.85443 0.78294 0.78841 0.78452 1.19700 1.20359 1.19244 0.94626 0.89112 0.91895 0.90616 0.86634 0.88271 0.92474 0.92913 0.87396 0.82323 0.81584 0.81971 0.81705 0.75826 0.94198 0.94047 0.97243 0.97358 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 10.24 71.98 0.74 -2.29 16 2 C 0.10 1.84 5.89 86.38 0.51 2.35 16 3 N -0.62 -17.13 2.47 -839.83 -2.08 -19.21 16 4 C 0.15 3.76 5.27 86.38 0.45 4.21 16 5 C -0.08 -1.75 5.94 29.85 0.18 -1.57 16 6 C 0.11 2.44 6.17 42.56 0.26 2.70 16 7 C -0.17 -2.45 9.71 22.36 0.22 -2.23 16 8 C -0.08 -0.85 10.18 22.47 0.23 -0.62 16 9 C -0.18 -2.20 10.11 22.36 0.23 -1.98 16 10 C 0.08 1.52 11.18 84.67 0.95 2.47 16 11 N -0.52 -13.37 9.89 -183.89 -1.82 -15.19 16 12 C 0.70 26.65 8.28 179.06 1.48 28.13 16 13 O -0.64 -30.38 15.92 -3.98 -0.06 -30.44 16 14 N -0.73 -28.06 5.42 -478.53 -2.59 -30.66 16 15 C 0.16 7.39 5.61 86.38 0.48 7.88 16 16 C 0.03 1.40 5.09 29.85 0.15 1.55 16 17 C -0.55 -31.35 9.11 25.60 0.23 -31.12 16 18 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 19 C 0.01 0.43 5.46 84.66 0.46 0.90 16 20 N -0.93 -54.69 13.29 21.45 0.28 -54.40 16 21 Si 0.97 44.40 29.54 68.60 2.03 46.42 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 25 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.45 6.36 -2.39 -0.02 1.44 16 29 H 0.12 1.33 8.07 -2.39 -0.02 1.31 16 30 H 0.10 1.88 8.07 -2.39 -0.02 1.86 16 31 H 0.06 1.90 7.23 -2.39 -0.02 1.88 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.11 1.69 7.87 -2.39 -0.02 1.67 16 34 H 0.16 1.39 7.95 -2.91 -0.02 1.37 16 35 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 36 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 37 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 38 H 0.40 13.35 6.20 -92.71 -0.58 12.78 16 39 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -77.26 363.21 2.75 -74.52 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.41 Total: 18.57 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 6.57 Total: 10.38 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -6.20 Total: -119.45 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.06 Total: -30.44 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -77.26 2.75 -74.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753264247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.551 kcal (2) G-P(sol) polarization free energy of solvation -77.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds