Wall clock time and date at job start Tue Mar 31 2020 07:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.40024 * 110.99872 * 236.04370 * 2 1 3 5 5 C 1.38672 * 120.08996 * 60.00581 * 4 2 1 6 6 C 1.38262 * 119.99489 * 180.02562 * 5 4 2 7 7 C 1.38258 * 120.19690 * 359.97438 * 6 5 4 8 8 C 1.38276 * 120.19184 * 0.02562 * 7 6 5 9 9 C 1.38664 * 119.99609 * 359.68035 * 8 7 6 10 10 N 1.40017 * 120.09708 * 180.30305 * 9 8 7 11 11 C 1.46907 * 110.99748 * 296.33702 * 10 9 8 12 12 C 1.46890 * 111.00179 * 60.29155 * 10 9 8 13 13 C 1.50701 * 109.47232 * 170.00269 * 12 10 9 14 14 O 1.21280 * 120.00148 * 0.02562 * 13 12 10 15 15 N 1.34780 * 120.00235 * 179.97438 * 13 12 10 16 16 C 1.46495 * 120.00043 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47123 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00067 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99933 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00342 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99740 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46938 * 60.00122 * 21 19 17 23 23 H 1.48498 * 109.47044 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47574 * 300.00203 * 21 19 17 25 25 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 26 26 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 27 27 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 28 28 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 29 29 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 30 30 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 31 31 H 1.07996 * 119.99871 * 0.02562 * 5 4 2 32 32 H 1.08003 * 119.90533 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.90854 * 180.02562 * 7 6 5 34 34 H 1.07998 * 119.99968 * 179.97438 * 8 7 6 35 35 H 1.09007 * 109.46726 * 59.99900 * 11 10 9 36 36 H 1.09001 * 109.47251 * 179.97438 * 11 10 9 37 37 H 1.08996 * 109.47247 * 300.00596 * 11 10 9 38 38 H 1.08999 * 109.47498 * 290.00221 * 12 10 9 39 39 H 1.08997 * 109.47068 * 50.00242 * 12 10 9 40 40 H 0.96998 * 119.99617 * 0.02562 * 15 13 12 41 41 H 1.09001 * 109.47573 * 300.00385 * 16 15 13 42 42 H 1.08997 * 109.47074 * 60.00289 * 16 15 13 43 43 H 0.97001 * 120.00052 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9708 -0.7302 -1.0843 5 6 1.6599 -0.3508 -2.3814 6 6 2.1560 -1.0736 -3.4506 7 6 2.9628 -2.1747 -3.2312 8 6 3.2777 -2.5600 -1.9411 9 6 2.7896 -1.8374 -0.8631 10 7 3.1124 -2.2219 0.4440 11 6 2.5681 -3.5514 0.7512 12 6 4.5648 -2.1848 0.6601 13 6 4.8590 -2.3624 2.1274 14 8 3.9484 -2.5062 2.9155 15 7 6.1342 -2.3624 2.5639 16 6 6.4202 -2.5344 3.9903 17 6 7.9103 -2.4965 4.2121 18 1 8.5775 -2.3577 3.3743 19 6 8.4217 -2.6391 5.4845 20 7 7.6092 -2.8076 6.5048 21 14 10.2689 -2.5928 5.7593 22 1 10.8048 -1.2856 5.3015 23 1 10.5588 -2.7670 7.2052 24 1 10.9115 -3.6880 4.9895 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.4513 -0.9233 27 1 -0.3633 0.5740 0.8525 28 1 1.5899 1.9163 0.8525 29 1 3.0829 1.3431 0.0709 30 1 1.7045 1.8723 -0.9233 31 1 1.0304 0.5090 -2.5563 32 1 1.9127 -0.7771 -4.4603 33 1 3.3481 -2.7357 -4.0698 34 1 3.9078 -3.4209 -1.7733 35 1 2.9843 -4.2832 0.0586 36 1 2.8338 -3.8258 1.7721 37 1 1.4830 -3.5320 0.6504 38 1 5.0369 -2.9885 0.0951 39 1 4.9577 -1.2252 0.3243 40 1 6.8625 -2.2478 1.9336 41 1 5.9486 -1.7302 4.5551 42 1 6.0268 -3.4937 4.3266 43 1 7.9691 -2.9083 7.3999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762927394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:53 Heat of formation + Delta-G solvation = 18.705074 kcal Electronic energy + Delta-G solvation = -23220.257879 eV Core-core repulsion = 19880.205782 eV Total energy + Delta-G solvation = -3340.052097 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43340 -38.80524 -36.91593 -35.86886 -34.04718 -32.28286 -30.24070 -29.86678 -28.50512 -27.61986 -26.64606 -24.85552 -24.47693 -22.55182 -21.35449 -20.81195 -19.53461 -17.49339 -16.94423 -16.25145 -15.95918 -15.42596 -15.28816 -14.97206 -14.91594 -14.52089 -14.33055 -14.19521 -13.77140 -13.61236 -13.18848 -12.66270 -12.58475 -12.38268 -12.26933 -12.06444 -11.89403 -11.78564 -11.73199 -11.49055 -11.42697 -11.14376 -10.96479 -10.79547 -10.28107 -9.37280 -9.05010 -8.92639 -8.69801 -8.67518 -8.39967 -8.15861 -7.78743 -6.13288 -4.20103 1.13527 1.15146 3.27150 3.31865 3.33331 3.46681 3.51060 3.71554 3.82073 4.29280 4.48485 4.75049 4.83676 4.94731 5.14418 5.17787 5.20740 5.22514 5.31986 5.38603 5.45274 5.47489 5.57176 5.60238 5.67510 5.71152 5.76512 5.82046 5.86660 6.15015 6.22400 6.30972 6.39235 6.66322 6.87057 7.00520 7.16102 7.37061 7.51800 7.57622 7.65557 7.72648 8.01405 8.69662 8.83759 9.19990 9.46752 10.96862 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024303 B = 0.003211 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.848297 B = 8717.346663 C = 9053.314654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.490 5.490 3 C 0.033 3.967 4 C 0.113 3.887 5 C -0.147 4.147 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.146 4.146 9 C 0.117 3.883 10 N -0.468 5.468 11 C 0.029 3.971 12 C 0.042 3.958 13 C 0.501 3.499 14 O -0.534 6.534 15 N -0.716 5.716 16 C 0.252 3.748 17 C -0.543 4.543 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.276 1.276 25 H 0.068 0.932 26 H 0.023 0.977 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.023 0.977 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.018 0.982 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.389 0.611 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.333 4.101 -20.603 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.210 5.210 3 C -0.113 4.113 4 C 0.018 3.982 5 C -0.168 4.168 6 C -0.136 4.136 7 C -0.133 4.133 8 C -0.167 4.167 9 C 0.022 3.978 10 N -0.189 5.189 11 C -0.118 4.118 12 C -0.088 4.088 13 C 0.285 3.715 14 O -0.411 6.411 15 N -0.366 5.366 16 C 0.132 3.868 17 C -0.582 4.582 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.087 0.913 26 H 0.041 0.959 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.037 0.963 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.221 0.779 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.057 4.082 -18.957 22.835 hybrid contribution 1.493 -0.069 -1.397 2.046 sum -10.564 4.013 -20.355 23.281 Atomic orbital electron populations 1.22413 0.86273 1.02518 1.00232 1.59473 1.07613 1.13453 1.40465 1.22409 1.01293 0.87446 1.00196 1.18743 0.96770 0.94236 0.88485 1.21585 1.01579 1.00646 0.92980 1.21000 0.98203 0.95838 0.98538 1.21033 0.98547 0.97211 0.96538 1.21734 1.01296 1.00443 0.93180 1.18826 0.96418 0.94119 0.88482 1.59145 1.10835 1.28829 1.20063 1.22575 0.99853 0.86340 1.02986 1.22052 0.88368 1.02627 0.95775 1.20197 0.83681 0.78094 0.89558 1.90634 1.44624 1.49238 1.56611 1.46439 1.05988 1.71931 1.12208 1.19060 0.95776 0.97330 0.74661 1.21203 0.91208 1.52105 0.93656 0.92007 1.24948 0.98555 0.94758 0.95739 1.69966 1.34869 1.47941 0.99517 0.86486 0.84598 0.78646 0.77233 1.20079 1.21090 1.20104 0.91340 0.95852 0.90912 0.90878 0.91175 0.95852 0.86207 0.86175 0.86065 0.85867 0.96346 0.88514 0.91735 0.92513 0.88621 0.77931 0.95549 0.95651 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.35 60.07 0.56 0.91 16 2 N -0.49 -6.34 4.70 -186.63 -0.88 -7.22 16 3 C 0.03 0.37 9.39 60.06 0.56 0.93 16 4 C 0.11 1.42 4.76 -83.50 -0.40 1.02 16 5 C -0.15 -1.51 8.58 -39.41 -0.34 -1.85 16 6 C -0.12 -1.07 10.04 -39.57 -0.40 -1.46 16 7 C -0.11 -1.08 10.04 -39.56 -0.40 -1.48 16 8 C -0.15 -1.63 8.66 -39.41 -0.34 -1.97 16 9 C 0.12 1.55 4.71 -83.50 -0.39 1.16 16 10 N -0.47 -7.27 4.18 -180.12 -0.75 -8.02 16 11 C 0.03 0.43 9.02 60.07 0.54 0.97 16 12 C 0.04 0.65 5.04 -4.98 -0.03 0.62 16 13 C 0.50 10.19 7.52 -10.98 -0.08 10.11 16 14 O -0.53 -12.98 14.33 5.56 0.08 -12.90 16 15 N -0.72 -15.25 5.55 -61.48 -0.34 -15.59 16 16 C 0.25 6.76 5.43 -5.20 -0.03 6.73 16 17 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 18 H 0.06 1.57 7.60 -52.49 -0.40 1.18 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 21 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.02 0.21 7.13 -51.93 -0.37 -0.16 16 27 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 28 H 0.07 0.76 8.12 -51.93 -0.42 0.33 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.02 0.22 7.35 -51.93 -0.38 -0.16 16 31 H 0.12 1.05 7.02 -52.49 -0.37 0.68 16 32 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.12 1.27 7.14 -52.49 -0.37 0.90 16 35 H 0.02 0.24 7.33 -51.92 -0.38 -0.14 16 36 H 0.10 1.73 5.82 -51.93 -0.30 1.43 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.75 7.50 -51.93 -0.39 0.36 16 39 H 0.10 1.37 8.06 -51.93 -0.42 0.95 16 40 H 0.39 7.08 8.32 -40.82 -0.34 6.74 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -32.82 354.81 -8.64 -41.46 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.66 Total: 4.35 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -1.15 Total: 2.20 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -1.23 Total: -56.39 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.82 -8.64 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762927394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.163 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds