Wall clock time and date at job start Tue Mar 31 2020 07:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.40024 * 110.99872 * 236.04370 * 2 1 3 5 5 C 1.38672 * 120.08996 * 60.00581 * 4 2 1 6 6 C 1.38262 * 119.99489 * 180.02562 * 5 4 2 7 7 C 1.38258 * 120.19690 * 359.97438 * 6 5 4 8 8 C 1.38276 * 120.19184 * 0.02562 * 7 6 5 9 9 C 1.38664 * 119.99609 * 359.68035 * 8 7 6 10 10 N 1.40017 * 120.09708 * 180.30305 * 9 8 7 11 11 C 1.46907 * 110.99748 * 296.33702 * 10 9 8 12 12 C 1.46890 * 111.00179 * 60.29155 * 10 9 8 13 13 C 1.50701 * 109.47232 * 170.00269 * 12 10 9 14 14 O 1.21280 * 120.00148 * 0.02562 * 13 12 10 15 15 N 1.34780 * 120.00235 * 179.97438 * 13 12 10 16 16 C 1.46495 * 120.00043 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47123 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00067 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99933 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00342 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99740 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46938 * 60.00122 * 21 19 17 23 23 H 1.48498 * 109.47044 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47574 * 300.00203 * 21 19 17 25 25 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 26 26 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 27 27 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 28 28 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 29 29 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 30 30 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 31 31 H 1.07996 * 119.99871 * 0.02562 * 5 4 2 32 32 H 1.08003 * 119.90533 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.90854 * 180.02562 * 7 6 5 34 34 H 1.07998 * 119.99968 * 179.97438 * 8 7 6 35 35 H 1.09007 * 109.46726 * 59.99900 * 11 10 9 36 36 H 1.09001 * 109.47251 * 179.97438 * 11 10 9 37 37 H 1.08996 * 109.47247 * 300.00596 * 11 10 9 38 38 H 1.08999 * 109.47498 * 290.00221 * 12 10 9 39 39 H 1.08997 * 109.47068 * 50.00242 * 12 10 9 40 40 H 0.96998 * 119.99617 * 0.02562 * 15 13 12 41 41 H 1.09001 * 109.47573 * 300.00385 * 16 15 13 42 42 H 1.08997 * 109.47074 * 60.00289 * 16 15 13 43 43 H 0.97001 * 120.00052 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9708 -0.7302 -1.0843 5 6 1.6599 -0.3508 -2.3814 6 6 2.1560 -1.0736 -3.4506 7 6 2.9628 -2.1747 -3.2312 8 6 3.2777 -2.5600 -1.9411 9 6 2.7896 -1.8374 -0.8631 10 7 3.1124 -2.2219 0.4440 11 6 2.5681 -3.5514 0.7512 12 6 4.5648 -2.1848 0.6601 13 6 4.8590 -2.3624 2.1274 14 8 3.9484 -2.5062 2.9155 15 7 6.1342 -2.3624 2.5639 16 6 6.4202 -2.5344 3.9903 17 6 7.9103 -2.4965 4.2121 18 1 8.5775 -2.3577 3.3743 19 6 8.4217 -2.6391 5.4845 20 7 7.6092 -2.8076 6.5048 21 14 10.2689 -2.5928 5.7593 22 1 10.8048 -1.2856 5.3015 23 1 10.5588 -2.7670 7.2052 24 1 10.9115 -3.6880 4.9895 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.4513 -0.9233 27 1 -0.3633 0.5740 0.8525 28 1 1.5899 1.9163 0.8525 29 1 3.0829 1.3431 0.0709 30 1 1.7045 1.8723 -0.9233 31 1 1.0304 0.5090 -2.5563 32 1 1.9127 -0.7771 -4.4603 33 1 3.3481 -2.7357 -4.0698 34 1 3.9078 -3.4209 -1.7733 35 1 2.9843 -4.2832 0.0586 36 1 2.8338 -3.8258 1.7721 37 1 1.4830 -3.5320 0.6504 38 1 5.0369 -2.9885 0.0951 39 1 4.9577 -1.2252 0.3243 40 1 6.8625 -2.2478 1.9336 41 1 5.9486 -1.7302 4.5551 42 1 6.0268 -3.4937 4.3266 43 1 7.9691 -2.9083 7.3999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762927394.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:52 Heat of formation + Delta-G solvation = -4.865785 kcal Electronic energy + Delta-G solvation = -23221.279988 eV Core-core repulsion = 19880.205782 eV Total energy + Delta-G solvation = -3341.074206 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41414 -40.32383 -37.98037 -36.85837 -35.99936 -34.32578 -31.14078 -30.82262 -30.00264 -28.50924 -28.33806 -26.04555 -25.32310 -24.42816 -22.41238 -21.68568 -21.23870 -18.94210 -18.30701 -17.43198 -17.26052 -16.93266 -16.56057 -16.37884 -16.17216 -15.82967 -15.36940 -15.33445 -15.00889 -14.75592 -14.43053 -14.20031 -13.97868 -13.82330 -13.43537 -13.17749 -13.00421 -12.95475 -12.84331 -12.71421 -12.62556 -12.58946 -12.36755 -12.23686 -12.20546 -11.49526 -10.77503 -10.66543 -9.79707 -9.77429 -9.51271 -9.30168 -9.22094 -8.27515 -6.44355 0.33659 0.36477 1.43593 1.47966 1.56089 1.81990 2.27467 2.46502 2.75016 2.98564 3.05048 3.07041 3.93358 4.01393 4.17123 4.19202 4.20692 4.28241 4.38162 4.39757 4.43023 4.48737 4.58734 4.62482 4.72165 4.75919 4.84971 4.97805 4.98794 5.07259 5.13944 5.26923 5.41004 5.49257 5.51490 5.56748 5.71410 5.85158 5.88002 5.89389 6.06625 6.22778 6.66684 6.73628 6.97271 7.25198 7.55821 8.84507 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024303 B = 0.003211 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.848297 B = 8717.346663 C = 9053.314654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.520 5.520 3 C 0.037 3.963 4 C 0.097 3.903 5 C -0.148 4.148 6 C -0.109 4.109 7 C -0.112 4.112 8 C -0.148 4.148 9 C 0.089 3.911 10 N -0.487 5.487 11 C 0.037 3.963 12 C 0.059 3.941 13 C 0.498 3.502 14 O -0.578 6.578 15 N -0.710 5.710 16 C 0.270 3.730 17 C -0.557 4.557 18 H 0.084 0.916 19 C 0.003 3.997 20 N -0.931 5.931 21 Si 0.985 3.015 22 H -0.262 1.262 23 H -0.286 1.286 24 H -0.261 1.261 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.135 0.865 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.130 0.870 35 H 0.039 0.961 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.407 0.593 41 H -0.016 1.016 42 H -0.013 1.013 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.088 4.588 -24.055 26.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.241 5.241 3 C -0.110 4.110 4 C 0.002 3.998 5 C -0.169 4.169 6 C -0.128 4.128 7 C -0.130 4.130 8 C -0.169 4.169 9 C -0.006 4.006 10 N -0.208 5.208 11 C -0.110 4.110 12 C -0.071 4.071 13 C 0.285 3.715 14 O -0.458 6.458 15 N -0.361 5.361 16 C 0.147 3.853 17 C -0.595 4.595 18 H 0.102 0.898 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.808 3.192 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.186 1.186 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.152 0.848 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.148 0.852 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.130 0.870 40 H 0.242 0.758 41 H 0.002 0.998 42 H 0.005 0.995 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.811 4.580 -22.473 25.355 hybrid contribution 0.986 -0.209 -0.384 1.078 sum -9.825 4.371 -22.857 25.260 Atomic orbital electron populations 1.22381 0.85338 1.02061 1.01296 1.59416 1.08753 1.14288 1.41636 1.22363 1.00266 0.87125 1.01239 1.18915 0.97210 0.94343 0.89318 1.21747 1.01650 1.01216 0.92271 1.21385 0.96830 0.94987 0.99584 1.21363 0.97907 0.97249 0.96519 1.21822 1.01291 1.00396 0.93381 1.18906 0.98427 0.95552 0.87674 1.58970 1.10507 1.28898 1.22425 1.22402 1.00106 0.87185 1.01273 1.21908 0.89329 1.04450 0.91400 1.21162 0.82462 0.76198 0.91716 1.90619 1.45869 1.50825 1.58528 1.46170 1.07385 1.72255 1.10313 1.18483 0.95720 0.93695 0.77362 1.21601 0.91355 1.51853 0.94654 0.89812 1.26078 1.04375 0.93868 0.95308 1.70138 1.37653 1.49024 1.00185 0.85205 0.77411 0.79476 0.77107 1.18671 1.21124 1.18569 0.92429 0.93953 0.90703 0.90796 0.92685 0.93904 0.84764 0.83211 0.83343 0.85173 0.94251 0.92127 0.91560 0.89544 0.87033 0.75779 0.99773 0.99517 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.35 127.69 1.19 1.93 16 2 N -0.52 -13.25 4.70 -744.38 -3.50 -16.75 16 3 C 0.04 0.79 9.39 127.69 1.20 1.99 16 4 C 0.10 2.30 4.76 38.23 0.18 2.49 16 5 C -0.15 -2.64 8.58 22.38 0.19 -2.44 16 6 C -0.11 -1.56 10.04 22.28 0.22 -1.34 16 7 C -0.11 -1.68 10.04 22.28 0.22 -1.46 16 8 C -0.15 -2.93 8.66 22.38 0.19 -2.73 16 9 C 0.09 2.25 4.71 38.23 0.18 2.43 16 10 N -0.49 -15.06 4.18 -723.77 -3.03 -18.09 16 11 C 0.04 1.13 9.02 127.69 1.15 2.28 16 12 C 0.06 1.77 5.04 85.56 0.43 2.20 16 13 C 0.50 20.85 7.52 87.66 0.66 21.51 16 14 O -0.58 -29.80 14.33 -3.03 -0.04 -29.85 16 15 N -0.71 -30.89 5.55 -466.80 -2.59 -33.48 16 16 C 0.27 15.18 5.43 85.63 0.46 15.65 16 17 C -0.56 -30.73 9.28 25.60 0.24 -30.49 16 18 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 19 C 0.00 0.18 5.46 84.66 0.46 0.64 16 20 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 21 Si 0.99 42.67 29.54 68.60 2.03 44.70 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.04 0.69 7.13 -2.39 -0.02 0.67 16 27 H 0.07 1.45 8.12 -2.38 -0.02 1.43 16 28 H 0.07 1.53 8.12 -2.38 -0.02 1.51 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 0.73 7.35 -2.39 -0.02 0.72 16 31 H 0.13 1.93 7.02 -2.91 -0.02 1.91 16 32 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 33 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.13 2.30 7.14 -2.91 -0.02 2.28 16 35 H 0.04 1.00 7.33 -2.38 -0.02 0.98 16 36 H 0.06 2.29 5.82 -2.39 -0.01 2.28 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.09 2.10 7.50 -2.39 -0.02 2.08 16 39 H 0.11 3.03 8.06 -2.39 -0.02 3.01 16 40 H 0.41 14.54 8.32 -92.71 -0.77 13.77 16 41 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 43 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -74.90 354.81 0.38 -74.52 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.23 Total: 23.02 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 6.99 Total: 12.67 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -8.83 Total: -125.06 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.04 Total: -29.85 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -74.90 0.38 -74.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762927394.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.655 kcal (2) G-P(sol) polarization free energy of solvation -74.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds