Wall clock time and date at job start Tue Mar 31 2020 06:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00047 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47231 * 89.99796 * 9 7 5 11 11 H 1.48499 * 109.47342 * 210.00322 * 9 7 5 12 12 H 1.48505 * 109.46935 * 330.00024 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 C 1.50700 * 109.46869 * 179.72354 * 15 13 3 17 17 N 1.31072 * 125.95592 * 269.68297 * 16 15 13 18 18 N 1.40296 * 108.26387 * 179.91351 * 17 16 15 19 19 H 0.97004 * 126.09231 * 180.09843 * 18 17 16 20 20 C 1.34325 * 107.82051 * 0.31138 * 18 17 16 21 21 C 1.35750 * 107.84074 * 359.86807 * 20 18 17 22 22 C 1.50845 * 124.10611 * 179.83224 * 21 20 18 23 23 C 1.53365 * 108.37963 * 343.45644 * 22 21 20 24 24 C 1.53106 * 109.51084 * 49.94590 * 23 22 21 25 25 C 1.50825 * 128.03132 * 179.90129 * 20 18 17 26 26 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 27 27 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 29 29 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 30 30 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 32 32 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 33 33 H 0.97004 * 119.99796 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 35 35 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 36 36 H 1.08995 * 109.68200 * 103.19171 * 22 21 20 37 37 H 1.09000 * 109.67763 * 223.74382 * 22 21 20 38 38 H 1.08996 * 109.46710 * 289.92709 * 23 22 21 39 39 H 1.09005 * 109.46032 * 169.95255 * 23 22 21 40 40 H 1.08998 * 109.46829 * 169.70752 * 24 23 22 41 41 H 1.09005 * 109.46053 * 49.71991 * 24 23 22 42 42 H 1.08993 * 109.68564 * 283.13123 * 25 20 18 43 43 H 1.08996 * 109.68379 * 43.69809 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 5.3915 2.1832 -3.2573 9 14 3.0137 3.4369 -3.9282 10 1 3.1174 4.8568 -3.5060 11 1 3.4067 3.3146 -5.3550 12 1 1.6138 2.9711 -3.7587 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 6 2.3292 2.2258 3.6176 17 7 3.4974 2.3386 4.2013 18 7 3.3906 3.3012 5.2164 19 1 4.1028 3.5878 5.8093 20 6 2.1252 3.7520 5.2239 21 6 1.4462 3.1018 4.2447 22 6 -0.0127 3.3268 3.9343 23 6 -0.6546 4.0494 5.1251 24 6 0.1964 5.2640 5.5054 25 6 1.5141 4.7904 6.1312 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5818 1.6876 -2.0285 32 1 2.0956 3.1410 -1.1385 33 1 5.7176 2.5736 -4.0832 34 1 0.9499 1.0100 2.5343 35 1 2.6281 0.4167 2.5258 36 1 -0.1070 3.9402 3.0383 37 1 -0.5067 2.3680 3.7771 38 1 -0.7150 3.3681 5.9738 39 1 -1.6570 4.3793 4.8523 40 1 -0.3469 5.8777 6.2239 41 1 0.4091 5.8522 4.6127 42 1 1.3192 4.3534 7.1105 43 1 2.1958 5.6346 6.2344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777184871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:41 Heat of formation + Delta-G solvation = 21.452042 kcal Electronic energy + Delta-G solvation = -23739.284189 eV Core-core repulsion = 20399.351210 eV Total energy + Delta-G solvation = -3339.932979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.45197 -38.97746 -36.53450 -35.31083 -33.40382 -32.59464 -30.42653 -30.07730 -29.31861 -28.59476 -26.97506 -23.57440 -22.91300 -22.55704 -22.06771 -20.01560 -18.69780 -18.09148 -17.45586 -16.85745 -16.46311 -15.46025 -15.28620 -14.74032 -14.20705 -14.03031 -13.94410 -13.76004 -13.42890 -13.32151 -13.17142 -13.01419 -12.66279 -12.47602 -12.12411 -12.00068 -11.87802 -11.57164 -11.32081 -11.03211 -10.94900 -10.90958 -10.66770 -10.64483 -10.44722 -10.24794 -10.09941 -9.48171 -9.29944 -8.78615 -8.53254 -8.11847 -7.63855 -6.02872 -4.00938 2.00924 2.85037 2.94822 3.32820 3.38761 3.40520 3.45356 3.98470 4.44506 4.48243 4.64750 4.72881 4.79224 5.12583 5.14960 5.18168 5.27375 5.31268 5.33234 5.42104 5.44618 5.56518 5.59923 5.64703 5.69505 5.77151 5.88938 5.92960 5.95944 6.04932 6.18352 6.21049 6.25106 6.37962 6.45836 6.74374 6.84354 7.02237 7.43625 7.43994 7.67860 7.88246 8.33649 8.53888 9.00678 9.08894 9.57732 11.10742 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.004251 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.585378 B = 6585.225164 C = 6826.058608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.515 3.485 14 O -0.530 6.530 15 C -0.064 4.064 16 C 0.113 3.887 17 N -0.282 5.282 18 N -0.471 5.471 19 H 0.435 0.565 20 C 0.078 3.922 21 C -0.221 4.221 22 C -0.042 4.042 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.054 4.054 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.102 0.023 18.600 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.326 5.326 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.300 3.700 14 O -0.406 6.406 15 C -0.105 4.105 16 C -0.053 4.053 17 N -0.105 5.105 18 N -0.178 5.178 19 H 0.278 0.722 20 C -0.051 4.051 21 C -0.232 4.232 22 C -0.080 4.080 23 C -0.155 4.155 24 C -0.153 4.153 25 C -0.093 4.093 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.542 0.263 18.446 22.308 hybrid contribution -0.615 0.903 -0.426 1.173 sum -13.157 1.167 18.020 22.343 Atomic orbital electron populations 1.22240 0.96790 1.01562 1.02246 1.21462 0.93378 0.83905 1.03206 1.47902 1.64535 1.13361 1.06842 1.19617 0.97209 0.93342 0.80117 1.21366 0.95429 1.32686 1.07008 0.90760 1.24861 0.94977 0.95842 0.97385 1.69908 1.15157 1.45143 1.23545 0.86855 0.81519 0.81623 0.79711 1.20006 1.21124 1.19032 1.20010 0.78466 0.86932 0.84553 1.90689 1.44796 1.18116 1.87011 1.20104 1.03550 0.97449 0.89445 1.21274 0.90737 0.97277 0.96032 1.77490 1.20937 1.09430 1.02624 1.45869 1.09195 1.33190 1.29553 0.72196 1.20806 0.85843 0.98854 0.99580 1.19638 0.97815 1.04228 1.01553 1.19981 0.89844 1.00245 0.97950 1.21584 0.98538 0.96916 0.98415 1.21549 0.94522 0.98056 1.01126 1.20314 0.97017 0.95249 0.96699 0.92251 0.91984 0.92890 0.89729 0.91304 0.95280 0.94710 0.92655 0.87712 0.87888 0.91076 0.91358 0.91889 0.91537 0.91198 0.91145 0.90067 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.10 1.63 5.94 -4.04 -0.02 1.60 16 3 N -0.59 -12.41 2.46 -175.06 -0.43 -12.84 16 4 C 0.22 5.44 4.23 -5.20 -0.02 5.42 16 5 C -0.53 -15.53 9.94 -34.44 -0.34 -15.87 16 6 H 0.07 2.41 8.06 -52.48 -0.42 1.99 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 9 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 10 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.52 10.95 7.67 -10.98 -0.08 10.87 16 14 O -0.53 -13.83 15.61 5.55 0.09 -13.74 16 15 C -0.06 -1.02 4.68 -29.03 -0.14 -1.16 16 16 C 0.11 1.96 5.70 -82.53 -0.47 1.49 16 17 N -0.28 -5.11 12.71 33.59 0.43 -4.68 16 18 N -0.47 -6.62 7.34 33.48 0.25 -6.37 16 19 H 0.43 4.53 8.96 -182.45 -1.64 2.90 16 20 C 0.08 1.03 7.08 -82.33 -0.58 0.45 16 21 C -0.22 -3.29 5.91 -105.05 -0.62 -3.91 16 22 C -0.04 -0.50 6.06 -27.62 -0.17 -0.67 16 23 C -0.12 -1.04 5.90 -26.49 -0.16 -1.20 16 24 C -0.11 -0.98 5.90 -26.48 -0.16 -1.13 16 25 C -0.05 -0.47 6.30 -27.63 -0.17 -0.65 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.60 7.24 -51.93 -0.38 0.22 16 29 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 30 H 0.07 0.90 6.43 -51.93 -0.33 0.57 16 31 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 32 H 0.03 0.93 6.85 -51.93 -0.36 0.58 16 33 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 34 H 0.10 1.31 6.94 -51.93 -0.36 0.95 16 35 H 0.10 1.53 7.40 -51.93 -0.38 1.15 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.72 7.94 -51.93 -0.41 0.31 16 38 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 347.87 15.07 5.24 5.24 Total: -1.00 -37.88 347.87 -9.02 -46.89 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -8.04 Total: 0.18 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.65 Total: -4.44 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 1.02 Total: -51.50 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.88 -9.02 -46.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777184871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.346 kcal (2) G-P(sol) polarization free energy of solvation -37.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds