Wall clock time and date at job start Tue Mar 31 2020 06:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00047 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47231 * 89.99796 * 9 7 5 11 11 H 1.48499 * 109.47342 * 210.00322 * 9 7 5 12 12 H 1.48505 * 109.46935 * 330.00024 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 C 1.50700 * 109.46869 * 179.72354 * 15 13 3 17 17 N 1.31072 * 125.95592 * 269.68297 * 16 15 13 18 18 N 1.40296 * 108.26387 * 179.91351 * 17 16 15 19 19 H 0.97004 * 126.09231 * 180.09843 * 18 17 16 20 20 C 1.34325 * 107.82051 * 0.31138 * 18 17 16 21 21 C 1.35750 * 107.84074 * 359.86807 * 20 18 17 22 22 C 1.50845 * 124.10611 * 179.83224 * 21 20 18 23 23 C 1.53365 * 108.37963 * 343.45644 * 22 21 20 24 24 C 1.53106 * 109.51084 * 49.94590 * 23 22 21 25 25 C 1.50825 * 128.03132 * 179.90129 * 20 18 17 26 26 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 27 27 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 29 29 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 30 30 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 32 32 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 33 33 H 0.97004 * 119.99796 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 35 35 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 36 36 H 1.08995 * 109.68200 * 103.19171 * 22 21 20 37 37 H 1.09000 * 109.67763 * 223.74382 * 22 21 20 38 38 H 1.08996 * 109.46710 * 289.92709 * 23 22 21 39 39 H 1.09005 * 109.46032 * 169.95255 * 23 22 21 40 40 H 1.08998 * 109.46829 * 169.70752 * 24 23 22 41 41 H 1.09005 * 109.46053 * 49.71991 * 24 23 22 42 42 H 1.08993 * 109.68564 * 283.13123 * 25 20 18 43 43 H 1.08996 * 109.68379 * 43.69809 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 5.3915 2.1832 -3.2573 9 14 3.0137 3.4369 -3.9282 10 1 3.1174 4.8568 -3.5060 11 1 3.4067 3.3146 -5.3550 12 1 1.6138 2.9711 -3.7587 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 6 2.3292 2.2258 3.6176 17 7 3.4974 2.3386 4.2013 18 7 3.3906 3.3012 5.2164 19 1 4.1028 3.5878 5.8093 20 6 2.1252 3.7520 5.2239 21 6 1.4462 3.1018 4.2447 22 6 -0.0127 3.3268 3.9343 23 6 -0.6546 4.0494 5.1251 24 6 0.1964 5.2640 5.5054 25 6 1.5141 4.7904 6.1312 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.5818 1.6876 -2.0285 32 1 2.0956 3.1410 -1.1385 33 1 5.7176 2.5736 -4.0832 34 1 0.9499 1.0100 2.5343 35 1 2.6281 0.4167 2.5258 36 1 -0.1070 3.9402 3.0383 37 1 -0.5067 2.3680 3.7771 38 1 -0.7150 3.3681 5.9738 39 1 -1.6570 4.3793 4.8523 40 1 -0.3469 5.8777 6.2239 41 1 0.4091 5.8522 4.6127 42 1 1.3192 4.3534 7.1105 43 1 2.1958 5.6346 6.2344 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777184871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:40 Heat of formation + Delta-G solvation = -5.277118 kcal Electronic energy + Delta-G solvation = -23740.443252 eV Core-core repulsion = 20399.351210 eV Total energy + Delta-G solvation = -3341.092043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.54484 -40.62276 -37.35356 -36.97270 -34.97368 -34.40027 -31.95956 -31.13931 -30.34464 -29.89360 -28.66247 -24.58866 -24.41188 -24.13174 -22.93818 -21.35812 -19.64714 -19.60721 -19.10669 -18.47507 -18.01204 -17.14172 -16.43072 -16.20259 -15.92775 -15.08862 -14.87113 -14.79257 -14.65171 -14.53647 -14.48700 -14.31283 -13.97031 -13.94407 -13.57763 -13.37590 -13.14566 -12.90672 -12.79028 -12.53867 -12.34875 -12.02667 -11.85421 -11.74682 -11.74196 -11.66550 -11.41651 -11.33040 -10.84591 -10.79800 -10.20529 -9.39596 -9.18746 -8.34826 -6.39850 0.90748 1.30670 1.35494 1.44123 1.64655 1.82361 1.93553 2.30171 2.46990 2.99567 3.55484 3.70449 3.80282 3.95858 4.06062 4.12705 4.21654 4.34478 4.37112 4.45462 4.51988 4.62606 4.68592 4.69845 4.80154 4.82125 4.84360 4.94105 5.05385 5.05675 5.07720 5.11389 5.23868 5.33645 5.43820 5.44948 5.48762 5.52889 5.67833 5.73600 6.24386 6.48346 6.61545 6.72155 6.73759 7.20826 7.44462 8.82614 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.004251 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.585378 B = 6585.225164 C = 6826.058608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.094 3.906 3 N -0.599 5.599 4 C 0.228 3.772 5 C -0.537 4.537 6 H 0.024 0.976 7 C 0.009 3.991 8 N -0.948 5.948 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.235 1.235 13 C 0.508 3.492 14 O -0.590 6.590 15 C -0.050 4.050 16 C 0.089 3.911 17 N -0.335 5.335 18 N -0.467 5.467 19 H 0.447 0.553 20 C 0.086 3.914 21 C -0.246 4.246 22 C -0.043 4.043 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.052 4.052 26 H 0.047 0.953 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.015 0.985 33 H 0.268 0.732 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.048 0.952 42 H 0.110 0.890 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.544 0.128 20.094 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.028 4.028 3 N -0.330 5.330 4 C 0.105 3.895 5 C -0.575 4.575 6 H 0.042 0.958 7 C -0.189 4.189 8 N -0.588 5.588 9 Si 0.772 3.228 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.158 1.158 13 C 0.296 3.704 14 O -0.470 6.470 15 C -0.092 4.092 16 C -0.076 4.076 17 N -0.159 5.159 18 N -0.175 5.175 19 H 0.293 0.707 20 C -0.044 4.044 21 C -0.257 4.257 22 C -0.081 4.081 23 C -0.149 4.149 24 C -0.153 4.153 25 C -0.090 4.090 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.163 0.837 35 H 0.131 0.869 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.128 0.872 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.009 0.304 19.959 25.588 hybrid contribution 0.577 0.838 -0.806 1.298 sum -15.433 1.141 19.153 24.623 Atomic orbital electron populations 1.22162 0.93484 1.03805 1.02353 1.21837 0.96024 0.80915 1.03982 1.48027 1.64272 1.15249 1.05495 1.19266 0.94636 0.92920 0.82650 1.21602 0.97245 1.32017 1.06661 0.95751 1.25895 0.96785 0.97206 0.98986 1.70068 1.17537 1.46680 1.24499 0.85687 0.80584 0.78776 0.77726 1.20452 1.19773 1.15754 1.20910 0.76980 0.86450 0.86098 1.90646 1.47476 1.20917 1.88000 1.20090 1.06140 0.96817 0.86112 1.21576 0.91283 0.98303 0.96452 1.77364 1.22127 1.11781 1.04636 1.45907 1.10252 1.32437 1.28939 0.70739 1.21564 0.85048 0.98463 0.99322 1.20082 0.99277 1.04281 1.02021 1.20055 0.88597 1.00994 0.98459 1.21582 0.99005 0.96936 0.97416 1.21596 0.94592 0.98079 1.01048 1.20541 0.97117 0.94483 0.96881 0.93411 0.88604 0.91543 0.90975 0.88676 0.93027 0.96674 0.92296 0.83705 0.86864 0.93421 0.90010 0.90561 0.89905 0.88154 0.93266 0.87210 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 10.24 71.98 0.74 -2.69 16 2 C 0.09 2.81 5.94 86.38 0.51 3.32 16 3 N -0.60 -25.22 2.46 -826.15 -2.03 -27.25 16 4 C 0.23 11.52 4.23 85.63 0.36 11.88 16 5 C -0.54 -32.99 9.94 25.60 0.25 -32.74 16 6 H 0.02 1.68 8.06 -2.91 -0.02 1.66 16 7 C 0.01 0.54 5.47 84.66 0.46 1.01 16 8 N -0.95 -62.00 13.96 21.45 0.30 -61.70 16 9 Si 0.95 45.87 27.47 68.60 1.88 47.75 16 10 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.23 -10.07 6.54 99.48 0.65 -9.42 16 13 C 0.51 22.04 7.67 87.66 0.67 22.71 16 14 O -0.59 -32.20 15.61 -3.04 -0.05 -32.25 16 15 C -0.05 -1.60 4.68 29.10 0.14 -1.46 16 16 C 0.09 3.10 5.70 42.93 0.24 3.34 16 17 N -0.34 -12.42 12.71 -47.63 -0.61 -13.03 16 18 N -0.47 -13.05 7.34 -47.99 -0.35 -13.40 16 19 H 0.45 9.21 8.96 -213.19 -1.91 7.30 16 20 C 0.09 2.16 7.08 41.64 0.29 2.45 16 21 C -0.25 -7.13 5.91 -20.14 -0.12 -7.24 16 22 C -0.04 -0.96 6.06 30.02 0.18 -0.78 16 23 C -0.11 -1.65 5.90 30.75 0.18 -1.47 16 24 C -0.12 -1.63 5.90 30.75 0.18 -1.45 16 25 C -0.05 -0.76 6.30 30.01 0.19 -0.57 16 26 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.26 7.24 -2.39 -0.02 1.24 16 29 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 30 H 0.10 2.31 6.43 -2.39 -0.02 2.30 16 31 H 0.05 2.37 7.13 -2.39 -0.02 2.36 16 32 H 0.02 0.83 6.85 -2.38 -0.02 0.81 16 33 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 34 H 0.15 3.28 6.94 -2.38 -0.02 3.26 16 35 H 0.11 3.31 7.40 -2.39 -0.02 3.29 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.54 7.94 -2.39 -0.02 1.52 16 38 H 0.08 0.96 8.11 -2.39 -0.02 0.94 16 39 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.05 0.91 8.11 -2.38 -0.02 0.89 16 42 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -89.09 347.87 2.49 -86.60 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -0.95 Total: 16.96 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 4.29 Total: -3.69 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -2.69 Total: -115.38 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.05 Total: -32.25 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.88 Total: 47.75 kcal Total: -89.09 2.49 -86.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777184871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.324 kcal (2) G-P(sol) polarization free energy of solvation -89.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds