Wall clock time and date at job start Tue Mar 31 2020 06:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.47022 * 2 1 4 4 C 1.46901 * 110.99793 * 293.95609 * 3 2 1 5 5 C 1.39673 * 111.00047 * 170.00053 * 3 2 1 6 6 C 1.38929 * 120.07517 * 59.99986 * 5 3 2 7 7 C 1.38077 * 119.92751 * 179.97438 * 6 5 3 8 8 C 1.38310 * 120.07229 * 0.02678 * 7 6 5 9 9 C 1.38262 * 120.15094 * 359.97192 * 8 7 6 10 10 C 1.38129 * 120.07446 * 359.74775 * 9 8 7 11 11 C 1.50699 * 120.03947 * 180.27119 * 10 9 8 12 12 N 1.46496 * 109.47252 * 260.25743 * 11 10 9 13 13 C 1.34784 * 120.00206 * 179.97438 * 12 11 10 14 14 O 1.21586 * 119.99728 * 0.02562 * 13 12 11 15 15 N 1.34767 * 120.00222 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00098 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47246 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99558 * 359.97438 * 17 16 15 19 19 C 1.37870 * 119.99996 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99870 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00013 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47027 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46936 * 119.99741 * 21 19 17 24 24 H 1.48501 * 109.47154 * 239.99828 * 21 19 17 25 25 H 1.09001 * 109.46919 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47190 * 299.99825 * 1 2 3 27 27 H 1.09001 * 109.47349 * 60.00258 * 1 2 3 28 28 H 1.08997 * 109.47190 * 240.00175 * 2 1 3 29 29 H 1.09001 * 109.47349 * 119.99742 * 2 1 3 30 30 H 1.09002 * 109.47401 * 59.99808 * 4 3 2 31 31 H 1.09001 * 109.46874 * 299.99821 * 4 3 2 32 32 H 1.09004 * 109.46970 * 179.97438 * 4 3 2 33 33 H 1.08000 * 120.03788 * 359.95215 * 6 5 3 34 34 H 1.08000 * 119.96620 * 179.97438 * 7 6 5 35 35 H 1.08003 * 119.92422 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.96492 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.46744 * 20.25795 * 11 10 9 38 38 H 1.09003 * 109.46999 * 140.25751 * 11 10 9 39 39 H 0.97003 * 120.00103 * 0.02562 * 12 11 10 40 40 H 0.97006 * 120.00052 * 359.97438 * 15 13 12 41 41 H 1.08993 * 109.47011 * 300.00108 * 16 15 13 42 42 H 1.09000 * 109.46893 * 59.99998 * 16 15 13 43 43 H 0.97005 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 -1.2533 5 6 3.3972 1.4289 0.2264 6 6 4.2673 0.7908 -0.6487 7 6 5.6286 0.8366 -0.4222 8 6 6.1262 1.5164 0.6747 9 6 5.2631 2.1526 1.5476 10 6 3.9006 2.1156 1.3237 11 6 2.9610 2.8145 2.2723 12 7 2.3828 1.8359 3.1965 13 6 1.5082 2.2357 4.1409 14 8 1.1987 3.4085 4.2254 15 7 0.9766 1.3355 4.9914 16 6 0.0256 1.7700 6.0175 17 6 -0.4156 0.5797 6.8299 18 1 -0.0266 -0.4023 6.6040 19 6 -1.3163 0.7441 7.8606 20 7 -1.7902 1.9398 8.1352 21 14 -1.8626 -0.7311 8.8679 22 1 -1.1879 -1.9533 8.3617 23 1 -1.5005 -0.5192 10.2924 24 1 -3.3339 -0.8936 8.7500 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5864 2.0793 -1.3703 31 1 2.1201 1.5371 -2.0929 32 1 2.0440 3.0905 -1.2266 33 1 3.8793 0.2591 -1.5050 34 1 6.3055 0.3403 -1.1019 35 1 7.1914 1.5503 0.8498 36 1 5.6550 2.6829 2.4029 37 1 3.5095 3.5681 2.8374 38 1 2.1632 3.2946 1.7055 39 1 2.6299 0.9003 3.1292 40 1 1.2232 0.3998 4.9237 41 1 0.5042 2.4991 6.6711 42 1 -0.8420 2.2248 5.5395 43 1 -2.4237 2.0556 8.8606 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787360046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:13 Heat of formation + Delta-G solvation = 0.147308 kcal Electronic energy + Delta-G solvation = -23142.893887 eV Core-core repulsion = 19802.037065 eV Total energy + Delta-G solvation = -3340.856822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38347 -38.84559 -37.07129 -34.69480 -33.85227 -32.27339 -31.52327 -31.13096 -29.33279 -27.35302 -26.30879 -25.24056 -23.16855 -22.44122 -21.33134 -20.67419 -19.98885 -18.03484 -17.25961 -16.21919 -16.00171 -15.63079 -15.51889 -15.23343 -14.62780 -14.52938 -14.39658 -14.26144 -13.55472 -13.29833 -13.11516 -12.85565 -12.61496 -12.57191 -12.25348 -12.05867 -11.90758 -11.87427 -11.60956 -11.36516 -11.27117 -10.96982 -10.86724 -10.85000 -10.24123 -9.40414 -9.27848 -9.03251 -8.81129 -8.67160 -8.64081 -8.47204 -7.61544 -6.09251 -4.15103 1.04650 1.11355 3.27794 3.33023 3.35870 3.38975 3.62332 3.84784 4.14363 4.39038 4.63523 4.67184 4.81844 4.84679 4.97207 5.13304 5.14875 5.23529 5.26825 5.30536 5.35332 5.36446 5.50094 5.62766 5.69197 5.76001 5.79362 5.88189 6.11291 6.15491 6.22602 6.26867 6.43566 6.64417 6.73869 7.05879 7.22011 7.27411 7.62882 7.67046 7.67599 8.01813 8.15537 8.85689 9.08719 9.44617 9.60851 11.01119 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.003440 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.375735 B = 8137.181579 C = 8624.237544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 N -0.501 5.501 4 C 0.028 3.972 5 C 0.106 3.894 6 C -0.153 4.153 7 C -0.108 4.108 8 C -0.126 4.126 9 C -0.096 4.096 10 C -0.079 4.079 11 C 0.195 3.805 12 N -0.744 5.744 13 C 0.695 3.305 14 O -0.604 6.604 15 N -0.731 5.731 16 C 0.268 3.732 17 C -0.539 4.539 18 H 0.062 0.938 19 C 0.062 3.938 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.027 0.973 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.388 0.612 40 H 0.385 0.615 41 H 0.023 0.977 42 H 0.024 0.976 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.531 -4.474 -20.484 24.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.066 4.066 3 N -0.222 5.222 4 C -0.119 4.119 5 C 0.012 3.988 6 C -0.173 4.173 7 C -0.127 4.127 8 C -0.144 4.144 9 C -0.115 4.115 10 C -0.081 4.081 11 C 0.070 3.930 12 N -0.400 5.400 13 C 0.395 3.605 14 O -0.483 6.483 15 N -0.383 5.383 16 C 0.147 3.853 17 C -0.577 4.577 18 H 0.080 0.920 19 C -0.141 4.141 20 N -0.524 5.524 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.220 0.780 40 H 0.216 0.784 41 H 0.041 0.959 42 H 0.042 0.958 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.794 -3.006 -19.854 23.809 hybrid contribution 0.321 -2.096 -0.229 2.133 sum 13.115 -5.102 -20.083 24.522 Atomic orbital electron populations 1.21810 0.94192 1.01819 1.02989 1.22114 0.96466 0.87271 1.00743 1.59593 1.10124 1.16925 1.35595 1.22462 1.02009 0.98958 0.88440 1.18712 0.88502 0.97114 0.94504 1.21630 0.94210 1.01446 1.00052 1.21027 0.94940 0.99060 0.97696 1.21166 0.99805 0.98318 0.95080 1.21143 0.92384 0.98789 0.99168 1.19975 0.93891 0.98654 0.95554 1.19693 0.94639 0.89904 0.88714 1.44995 1.49030 1.10610 1.35398 1.16105 0.79234 0.85657 0.79484 1.90861 1.65729 1.16614 1.75100 1.45672 1.48191 1.09280 1.35192 1.18941 0.86586 0.95554 0.84261 1.21281 1.26561 0.93962 1.15910 0.91978 1.24942 0.95878 0.96175 0.97084 1.69996 1.30721 1.21499 1.30137 0.86379 0.78429 0.82304 0.79879 1.19704 1.20862 1.20866 0.92120 0.91083 0.92747 0.94878 0.90659 0.90510 0.95475 0.91202 0.86451 0.86227 0.85910 0.85350 0.91984 0.90447 0.77964 0.78364 0.95871 0.95839 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.84 37.16 0.37 -1.16 16 2 C 0.06 0.61 5.26 -3.82 -0.02 0.59 16 3 N -0.50 -5.50 3.87 -178.95 -0.69 -6.19 16 4 C 0.03 0.26 9.05 60.07 0.54 0.80 16 5 C 0.11 1.15 4.65 -83.79 -0.39 0.76 16 6 C -0.15 -1.43 8.70 -39.38 -0.34 -1.77 16 7 C -0.11 -0.91 10.04 -39.61 -0.40 -1.31 16 8 C -0.13 -1.08 10.04 -39.55 -0.40 -1.48 16 9 C -0.10 -0.96 9.66 -39.61 -0.38 -1.34 16 10 C -0.08 -0.92 5.27 -104.42 -0.55 -1.47 16 11 C 0.20 2.82 5.43 -5.20 -0.03 2.79 16 12 N -0.74 -11.96 5.55 -66.42 -0.37 -12.33 16 13 C 0.70 15.00 8.57 -86.92 -0.74 14.25 16 14 O -0.60 -15.70 16.34 5.29 0.09 -15.62 16 15 N -0.73 -16.24 5.55 -66.42 -0.37 -16.61 16 16 C 0.27 7.36 5.43 -5.19 -0.03 7.34 16 17 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 18 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 21 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.50 6.55 -51.93 -0.34 0.16 16 28 H 0.03 0.29 7.47 -51.93 -0.39 -0.10 16 29 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 30 H 0.08 0.69 6.47 -51.93 -0.34 0.35 16 31 H 0.03 0.22 7.48 -51.93 -0.39 -0.17 16 32 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 33 H 0.12 0.96 7.16 -52.49 -0.38 0.58 16 34 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 36 H 0.13 1.16 8.04 -52.49 -0.42 0.74 16 37 H 0.06 0.92 8.01 -51.93 -0.42 0.51 16 38 H 0.08 1.25 7.80 -51.93 -0.40 0.84 16 39 H 0.39 5.38 8.48 -40.82 -0.35 5.04 16 40 H 0.38 7.38 8.34 -40.82 -0.34 7.04 16 41 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 358.70 15.07 5.41 5.41 Total: -1.00 -33.30 358.70 -9.68 -42.98 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.67 Total: 7.66 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -2.79 Total: 4.41 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.69 Total: -60.97 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.09 Total: -15.62 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.30 -9.68 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787360046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.126 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds