Wall clock time and date at job start Tue Mar 31 2020 06:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.47022 * 2 1 4 4 C 1.46901 * 110.99793 * 293.95609 * 3 2 1 5 5 C 1.39673 * 111.00047 * 170.00053 * 3 2 1 6 6 C 1.38929 * 120.07517 * 59.99986 * 5 3 2 7 7 C 1.38077 * 119.92751 * 179.97438 * 6 5 3 8 8 C 1.38310 * 120.07229 * 0.02678 * 7 6 5 9 9 C 1.38262 * 120.15094 * 359.97192 * 8 7 6 10 10 C 1.38129 * 120.07446 * 359.74775 * 9 8 7 11 11 C 1.50699 * 120.03947 * 180.27119 * 10 9 8 12 12 N 1.46496 * 109.47252 * 260.25743 * 11 10 9 13 13 C 1.34784 * 120.00206 * 179.97438 * 12 11 10 14 14 O 1.21586 * 119.99728 * 0.02562 * 13 12 11 15 15 N 1.34767 * 120.00222 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00098 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47246 * 179.97438 * 16 15 13 18 18 H 1.08004 * 119.99558 * 359.97438 * 17 16 15 19 19 C 1.37870 * 119.99996 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99870 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00013 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47027 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46936 * 119.99741 * 21 19 17 24 24 H 1.48501 * 109.47154 * 239.99828 * 21 19 17 25 25 H 1.09001 * 109.46919 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47190 * 299.99825 * 1 2 3 27 27 H 1.09001 * 109.47349 * 60.00258 * 1 2 3 28 28 H 1.08997 * 109.47190 * 240.00175 * 2 1 3 29 29 H 1.09001 * 109.47349 * 119.99742 * 2 1 3 30 30 H 1.09002 * 109.47401 * 59.99808 * 4 3 2 31 31 H 1.09001 * 109.46874 * 299.99821 * 4 3 2 32 32 H 1.09004 * 109.46970 * 179.97438 * 4 3 2 33 33 H 1.08000 * 120.03788 * 359.95215 * 6 5 3 34 34 H 1.08000 * 119.96620 * 179.97438 * 7 6 5 35 35 H 1.08003 * 119.92422 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.96492 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.46744 * 20.25795 * 11 10 9 38 38 H 1.09003 * 109.46999 * 140.25751 * 11 10 9 39 39 H 0.97003 * 120.00103 * 0.02562 * 12 11 10 40 40 H 0.97006 * 120.00052 * 359.97438 * 15 13 12 41 41 H 1.08993 * 109.47011 * 300.00108 * 16 15 13 42 42 H 1.09000 * 109.46893 * 59.99998 * 16 15 13 43 43 H 0.97005 * 120.00032 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0670 -1.2533 5 6 3.3972 1.4289 0.2264 6 6 4.2673 0.7908 -0.6487 7 6 5.6286 0.8366 -0.4222 8 6 6.1262 1.5164 0.6747 9 6 5.2631 2.1526 1.5476 10 6 3.9006 2.1156 1.3237 11 6 2.9610 2.8145 2.2723 12 7 2.3828 1.8359 3.1965 13 6 1.5082 2.2357 4.1409 14 8 1.1987 3.4085 4.2254 15 7 0.9766 1.3355 4.9914 16 6 0.0256 1.7700 6.0175 17 6 -0.4156 0.5797 6.8299 18 1 -0.0266 -0.4023 6.6040 19 6 -1.3163 0.7441 7.8606 20 7 -1.7902 1.9398 8.1352 21 14 -1.8626 -0.7311 8.8679 22 1 -1.1879 -1.9533 8.3617 23 1 -1.5005 -0.5192 10.2924 24 1 -3.3339 -0.8936 8.7500 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.5864 2.0793 -1.3703 31 1 2.1201 1.5371 -2.0929 32 1 2.0440 3.0905 -1.2266 33 1 3.8793 0.2591 -1.5050 34 1 6.3055 0.3403 -1.1019 35 1 7.1914 1.5503 0.8498 36 1 5.6550 2.6829 2.4029 37 1 3.5095 3.5681 2.8374 38 1 2.1632 3.2946 1.7055 39 1 2.6299 0.9003 3.1292 40 1 1.2232 0.3998 4.9237 41 1 0.5042 2.4991 6.6711 42 1 -0.8420 2.2248 5.5395 43 1 -2.4237 2.0556 8.8606 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787360046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:13 Heat of formation + Delta-G solvation = -23.104511 kcal Electronic energy + Delta-G solvation = -23143.902161 eV Core-core repulsion = 19802.037065 eV Total energy + Delta-G solvation = -3341.865096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.29794 -40.50275 -37.84666 -36.31564 -35.68055 -34.31512 -32.41645 -32.13441 -30.13220 -29.23395 -27.30996 -26.38426 -24.46450 -23.92149 -22.23356 -21.82604 -21.42397 -19.79643 -18.26767 -17.85103 -17.31401 -16.92953 -16.49908 -16.40109 -16.24002 -16.02180 -15.39358 -15.06624 -14.96854 -14.87888 -14.32504 -14.04217 -13.96225 -13.78677 -13.44125 -13.37059 -13.01948 -12.84722 -12.79001 -12.73361 -12.72153 -12.20361 -12.19426 -12.07245 -11.76426 -11.42013 -11.24401 -10.79098 -10.19576 -9.83334 -9.60447 -9.50438 -9.37668 -8.26001 -6.42242 0.27078 0.38251 1.44567 1.46342 1.59611 2.03338 2.33788 2.41881 2.81701 2.86597 3.08873 3.67502 3.75426 3.93357 4.05335 4.18372 4.21173 4.39821 4.42268 4.45456 4.57005 4.62506 4.66859 4.74637 4.84853 4.88323 4.99274 5.08126 5.09844 5.12924 5.30864 5.33602 5.46079 5.52378 5.55555 5.57876 5.63667 5.73081 5.88722 5.91436 5.98841 6.31551 6.47623 6.69960 7.27199 7.37081 7.79799 8.86734 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019625 B = 0.003440 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.375735 B = 8137.181579 C = 8624.237544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 N -0.523 5.523 4 C 0.030 3.970 5 C 0.099 3.901 6 C -0.155 4.155 7 C -0.101 4.101 8 C -0.124 4.124 9 C -0.100 4.100 10 C -0.097 4.097 11 C 0.200 3.800 12 N -0.717 5.717 13 C 0.694 3.306 14 O -0.651 6.651 15 N -0.724 5.724 16 C 0.287 3.713 17 C -0.552 4.552 18 H 0.083 0.917 19 C 0.003 3.997 20 N -0.931 5.931 21 Si 0.987 3.013 22 H -0.253 1.253 23 H -0.278 1.278 24 H -0.279 1.279 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.132 0.868 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.133 0.867 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.403 0.597 40 H 0.402 0.598 41 H -0.016 1.016 42 H -0.017 1.017 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.314 -7.360 -21.813 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.063 4.063 3 N -0.245 5.245 4 C -0.117 4.117 5 C 0.005 3.995 6 C -0.174 4.174 7 C -0.119 4.119 8 C -0.142 4.142 9 C -0.119 4.119 10 C -0.099 4.099 11 C 0.076 3.924 12 N -0.373 5.373 13 C 0.394 3.606 14 O -0.535 6.535 15 N -0.377 5.377 16 C 0.164 3.836 17 C -0.590 4.590 18 H 0.101 0.899 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.810 3.190 22 H -0.177 1.177 23 H -0.204 1.204 24 H -0.204 1.204 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.150 0.850 34 H 0.166 0.834 35 H 0.166 0.834 36 H 0.151 0.849 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.238 0.762 40 H 0.237 0.763 41 H 0.002 0.998 42 H 0.001 0.999 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.634 -5.943 -21.241 26.470 hybrid contribution -0.159 -1.143 0.078 1.157 sum 14.475 -7.086 -21.163 26.601 Atomic orbital electron populations 1.21767 0.94628 1.02226 1.01758 1.22092 0.96012 0.87003 1.01208 1.59544 1.10661 1.17577 1.36678 1.22450 1.02095 0.98680 0.88442 1.18775 0.88673 0.97397 0.94670 1.21783 0.94505 1.01139 1.00022 1.21398 0.94944 0.97988 0.97619 1.21458 1.00865 0.97340 0.94498 1.21265 0.91836 0.98992 0.99841 1.19733 0.93979 1.00362 0.95791 1.19655 0.94490 0.89712 0.88497 1.44784 1.46937 1.11814 1.33731 1.16263 0.79615 0.84732 0.79994 1.90825 1.67451 1.18747 1.76441 1.45267 1.47624 1.10312 1.34527 1.18380 0.85715 0.95075 0.84449 1.21624 1.26870 0.94453 1.16070 0.89927 1.26070 0.95649 0.99579 0.98334 1.70160 1.31448 1.24406 1.30990 0.85087 0.77941 0.78338 0.77673 1.17677 1.20411 1.20425 0.90891 0.94327 0.91893 0.92997 0.91434 0.90554 0.93799 0.91915 0.85016 0.83442 0.83404 0.84904 0.92687 0.92499 0.76196 0.76279 0.99766 0.99865 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.84 71.98 0.71 -2.19 16 2 C 0.06 1.18 5.26 86.30 0.45 1.64 16 3 N -0.52 -11.12 3.87 -720.07 -2.79 -13.91 16 4 C 0.03 0.53 9.05 127.69 1.16 1.69 16 5 C 0.10 2.02 4.65 38.21 0.18 2.19 16 6 C -0.15 -2.42 8.70 22.40 0.19 -2.23 16 7 C -0.10 -1.31 10.04 22.25 0.22 -1.09 16 8 C -0.12 -1.73 10.04 22.29 0.22 -1.50 16 9 C -0.10 -1.84 9.66 22.25 0.22 -1.63 16 10 C -0.10 -2.19 5.27 -19.73 -0.10 -2.29 16 11 C 0.20 5.97 5.43 85.63 0.46 6.43 16 12 N -0.72 -23.45 5.55 -482.30 -2.68 -26.13 16 13 C 0.69 31.07 8.57 179.06 1.53 32.60 16 14 O -0.65 -35.78 16.34 -3.99 -0.07 -35.84 16 15 N -0.72 -33.04 5.55 -482.30 -2.68 -35.72 16 16 C 0.29 16.53 5.43 85.64 0.46 17.00 16 17 C -0.55 -30.91 9.28 25.60 0.24 -30.67 16 18 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 19 C 0.00 0.17 5.46 84.65 0.46 0.63 16 20 N -0.93 -57.34 13.29 21.44 0.28 -57.05 16 21 Si 0.99 43.05 29.54 68.60 2.03 45.07 16 22 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.11 6.55 -2.39 -0.02 1.10 16 28 H 0.05 0.78 7.47 -2.39 -0.02 0.76 16 29 H 0.07 1.35 8.06 -2.39 -0.02 1.33 16 30 H 0.08 1.33 6.47 -2.39 -0.02 1.32 16 31 H 0.04 0.62 7.48 -2.39 -0.02 0.60 16 32 H 0.06 1.19 8.13 -2.38 -0.02 1.17 16 33 H 0.13 1.67 7.16 -2.91 -0.02 1.65 16 34 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.13 2.25 8.04 -2.91 -0.02 2.22 16 37 H 0.05 1.71 8.01 -2.39 -0.02 1.69 16 38 H 0.06 1.94 7.80 -2.39 -0.02 1.92 16 39 H 0.40 10.97 8.48 -92.71 -0.79 10.18 16 40 H 0.40 15.35 8.34 -92.70 -0.77 14.58 16 41 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 42 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 43 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 Total: -1.00 -75.14 358.70 -0.03 -75.17 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -0.54 Total: 27.83 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 6.41 Total: 20.58 kcal Atomic # 7 Polarization: -124.95 SS G_CDS: -7.86 Total: -132.81 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.07 Total: -35.84 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -75.14 -0.03 -75.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787360046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.062 kcal (2) G-P(sol) polarization free energy of solvation -75.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds