Wall clock time and date at job start Tue Mar 31 2020 07:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 119.99724 * 2 1 4 4 C 1.39669 * 119.99939 * 179.97438 * 2 1 3 5 5 C 1.38906 * 120.07870 * 0.02562 * 4 2 1 6 6 C 1.38110 * 119.92735 * 180.02562 * 5 4 2 7 7 C 1.38285 * 120.07007 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.92063 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46743 * 90.00216 * 8 7 6 10 10 C 1.46506 * 120.00098 * 90.00098 * 9 8 7 11 11 C 1.34771 * 120.00308 * 269.99953 * 9 8 7 12 12 O 1.21593 * 120.00167 * 359.97438 * 11 9 8 13 13 N 1.34780 * 120.00532 * 180.02562 * 11 9 8 14 14 C 1.46496 * 120.00367 * 179.97438 * 13 11 9 15 15 C 1.50701 * 109.47414 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99799 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00288 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99934 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00097 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47144 * 89.99929 * 19 17 15 21 21 H 1.48497 * 109.46990 * 210.00306 * 19 17 15 22 22 H 1.48507 * 109.46940 * 330.00161 * 19 17 15 23 23 C 1.38285 * 120.15526 * 0.27555 * 7 6 5 24 24 C 1.38112 * 120.06955 * 359.45057 * 23 7 6 25 25 H 1.09000 * 109.47281 * 269.99351 * 1 2 3 26 26 H 1.08997 * 109.47467 * 30.00223 * 1 2 3 27 27 H 1.09001 * 109.47132 * 149.99929 * 1 2 3 28 28 H 1.08998 * 109.47408 * 240.00071 * 3 2 1 29 29 H 1.09006 * 109.47105 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.46993 * 119.99856 * 3 2 1 31 31 H 1.07996 * 120.03688 * 0.03704 * 5 4 2 32 32 H 1.08003 * 119.96340 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47445 * 330.00550 * 8 7 6 34 34 H 1.09000 * 109.47150 * 210.00159 * 8 7 6 35 35 H 1.09001 * 109.47060 * 270.00243 * 10 9 8 36 36 H 1.09004 * 109.47073 * 29.99732 * 10 9 8 37 37 H 1.09000 * 109.47212 * 149.99814 * 10 9 8 38 38 H 0.97000 * 119.99501 * 0.02562 * 13 11 9 39 39 H 1.09004 * 109.47298 * 300.00557 * 14 13 11 40 40 H 1.09000 * 109.47160 * 60.00094 * 14 13 11 41 41 H 0.96991 * 120.00138 * 179.97438 * 18 17 15 42 42 H 1.07995 * 119.96621 * 179.70500 * 23 7 6 43 43 H 1.07998 * 120.03663 * 180.27742 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1634 -1.2096 0.0005 5 6 1.4705 -2.4135 0.0005 6 6 2.1642 -3.6077 0.0016 7 6 3.5470 -3.6058 0.0021 8 6 4.3005 -4.9109 0.0039 9 7 4.5452 -5.3352 -1.3768 10 6 5.7664 -4.9130 -2.0674 11 6 3.6471 -6.1140 -2.0117 12 8 2.6338 -6.4649 -1.4385 13 7 3.8724 -6.5049 -3.2817 14 6 2.8964 -7.3519 -3.9717 15 6 3.3822 -7.6433 -5.3681 16 1 4.3242 -7.2383 -5.7076 17 6 2.6249 -8.4276 -6.2120 18 7 1.4781 -8.9211 -5.7984 19 14 3.2275 -8.7893 -7.9427 20 1 4.0477 -10.0272 -7.9326 21 1 2.0620 -8.9750 -8.8439 22 1 4.0520 -7.6532 -8.4273 23 6 4.2400 -2.4091 0.0074 24 6 3.5525 -1.2113 0.0006 25 1 -0.3634 -0.0001 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 2.8241 1.3266 -0.8900 29 1 1.4890 2.0972 0.0005 30 1 2.8241 1.3265 0.8900 31 1 0.3905 -2.4157 -0.0005 32 1 1.6260 -4.5441 0.0020 33 1 3.7113 -5.6700 0.5183 34 1 5.2527 -4.7800 0.5180 35 1 5.5849 -3.9696 -2.5823 36 1 6.5680 -4.7819 -1.3405 37 1 6.0548 -5.6734 -2.7931 38 1 4.6813 -6.2259 -3.7387 39 1 2.7769 -8.2876 -3.4254 40 1 1.9378 -6.8353 -4.0213 41 1 0.9450 -9.4725 -6.3922 42 1 5.3199 -2.4112 0.0126 43 1 4.0943 -0.2770 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787363836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:33 Heat of formation + Delta-G solvation = 12.276483 kcal Electronic energy + Delta-G solvation = -22863.981792 eV Core-core repulsion = 19523.650931 eV Total energy + Delta-G solvation = -3340.330861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.85458 -39.05515 -36.57896 -34.79778 -34.10508 -32.29885 -31.03802 -30.69401 -28.29131 -27.45704 -26.97874 -25.47359 -23.71325 -22.23359 -22.16432 -20.40531 -19.16735 -17.83164 -17.33509 -16.02088 -15.78184 -15.68853 -15.60373 -15.19518 -14.69726 -14.56466 -13.92107 -13.81323 -13.43365 -13.39525 -13.04217 -12.91365 -12.85719 -12.45521 -12.32333 -12.19791 -12.08699 -11.89754 -11.71703 -11.43122 -11.32735 -10.90941 -10.84198 -10.62405 -10.23682 -9.78284 -9.31189 -9.22126 -8.74534 -8.66855 -8.29909 -7.64262 -7.25197 -6.10545 -4.16621 1.60343 1.66968 3.02534 3.27694 3.32472 3.35149 3.41213 4.02775 4.11176 4.36510 4.77619 4.81691 4.89778 5.06067 5.09239 5.13496 5.18677 5.25429 5.33000 5.38000 5.42050 5.43438 5.49201 5.62215 5.66792 5.78703 5.84278 5.88933 6.02924 6.24342 6.36916 6.54208 6.83236 6.96762 7.00270 7.18511 7.24111 7.48314 7.59335 7.63240 7.64900 7.94042 8.08837 8.82752 9.00177 9.41010 9.55973 10.99794 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.003260 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.935695 B = 8586.598962 C = 9161.865038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.642 5.642 3 C 0.099 3.901 4 C 0.210 3.790 5 C -0.198 4.198 6 C -0.042 4.042 7 C -0.157 4.157 8 C 0.181 3.819 9 N -0.638 5.638 10 C 0.084 3.916 11 C 0.696 3.304 12 O -0.598 6.598 13 N -0.730 5.730 14 C 0.267 3.733 15 C -0.540 4.540 16 H 0.061 0.939 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.062 4.062 24 C -0.201 4.201 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.386 0.614 39 H 0.024 0.976 40 H 0.024 0.976 41 H 0.265 0.735 42 H 0.116 0.884 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.358 18.740 12.788 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.355 5.355 3 C -0.044 4.044 4 C 0.109 3.891 5 C -0.220 4.220 6 C -0.062 4.062 7 C -0.160 4.160 8 C 0.058 3.942 9 N -0.376 5.376 10 C -0.060 4.060 11 C 0.397 3.603 12 O -0.477 6.477 13 N -0.383 5.383 14 C 0.146 3.854 15 C -0.578 4.578 16 H 0.079 0.921 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.081 4.081 24 C -0.224 4.224 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.137 0.863 32 H 0.148 0.852 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.219 0.781 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.134 0.866 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.332 18.486 13.102 23.068 hybrid contribution 0.622 0.089 -1.332 1.472 sum 4.954 18.575 11.770 22.541 Atomic orbital electron populations 1.21640 0.79692 1.02668 1.00938 1.46277 1.04868 1.03165 1.81236 1.21538 0.96898 0.84968 1.01006 1.17820 0.91258 0.85441 0.94576 1.20709 0.99554 0.91100 1.10673 1.21042 0.93808 0.97709 0.93607 1.20097 0.94161 0.95231 1.06537 1.20014 0.98929 0.93009 0.82239 1.47122 1.21798 1.54314 1.14401 1.21623 0.86796 0.99975 0.97562 1.16076 0.82957 0.78956 0.82268 1.90829 1.27969 1.61943 1.66960 1.45846 1.26006 1.54798 1.11693 1.18948 0.87109 0.88951 0.90406 1.21232 1.06544 1.32531 0.97537 0.92073 1.24939 0.94748 0.95435 0.98906 1.69980 1.12323 1.33483 1.36550 0.86428 0.78301 0.78688 0.83554 1.20502 1.21044 1.19790 1.20722 0.98939 0.91433 0.97004 1.20514 0.91945 0.98265 1.11660 0.93618 0.91804 0.91157 0.92995 0.91185 0.93033 0.86279 0.85176 0.89460 0.90730 0.93331 0.91591 0.91407 0.78055 0.95825 0.95848 0.92525 0.86571 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 10.16 59.85 0.61 1.42 16 2 N -0.64 -6.83 3.41 -187.55 -0.64 -7.47 16 3 C 0.10 0.77 9.40 59.85 0.56 1.33 16 4 C 0.21 2.73 6.55 -83.79 -0.55 2.18 16 5 C -0.20 -2.82 9.21 -39.38 -0.36 -3.18 16 6 C -0.04 -0.67 9.69 -39.61 -0.38 -1.05 16 7 C -0.16 -2.26 5.46 -104.59 -0.57 -2.83 16 8 C 0.18 2.59 5.57 -5.19 -0.03 2.56 16 9 N -0.64 -10.46 2.86 -188.73 -0.54 -11.00 16 10 C 0.08 1.05 10.25 59.85 0.61 1.66 16 11 C 0.70 15.11 8.28 -86.92 -0.72 14.39 16 12 O -0.60 -15.07 15.44 5.28 0.08 -14.99 16 13 N -0.73 -16.49 5.41 -66.41 -0.36 -16.85 16 14 C 0.27 7.37 5.43 -5.20 -0.03 7.34 16 15 C -0.54 -15.05 9.28 -34.44 -0.32 -15.37 16 16 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 17 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 19 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 23 C -0.06 -0.76 9.69 -39.61 -0.38 -1.15 16 24 C -0.20 -2.46 9.31 -39.38 -0.37 -2.83 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 27 H 0.07 0.65 6.20 -51.93 -0.32 0.33 16 28 H 0.05 0.40 7.95 -51.93 -0.41 -0.01 16 29 H 0.07 0.40 7.80 -51.93 -0.40 0.00 16 30 H 0.05 0.37 7.95 -51.93 -0.41 -0.04 16 31 H 0.12 1.53 6.14 -52.49 -0.32 1.21 16 32 H 0.13 2.27 7.57 -52.48 -0.40 1.87 16 33 H 0.09 1.38 7.36 -51.93 -0.38 1.00 16 34 H 0.07 0.81 7.83 -51.93 -0.41 0.41 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.62 7.89 -51.93 -0.41 0.21 16 37 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 38 H 0.39 7.60 6.05 -40.82 -0.25 7.35 16 39 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.17 6.73 -52.49 -0.35 0.82 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -34.32 355.28 -8.87 -43.19 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.46 Total: 5.27 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -2.03 Total: 6.15 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.80 Total: -61.16 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.08 Total: -14.99 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.32 -8.87 -43.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787363836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.466 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds