Wall clock time and date at job start Tue Mar 31 2020 07:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 119.99724 * 2 1 4 4 C 1.39669 * 119.99939 * 179.97438 * 2 1 3 5 5 C 1.38906 * 120.07870 * 0.02562 * 4 2 1 6 6 C 1.38110 * 119.92735 * 180.02562 * 5 4 2 7 7 C 1.38285 * 120.07007 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.92063 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46743 * 90.00216 * 8 7 6 10 10 C 1.46506 * 120.00098 * 90.00098 * 9 8 7 11 11 C 1.34771 * 120.00308 * 269.99953 * 9 8 7 12 12 O 1.21593 * 120.00167 * 359.97438 * 11 9 8 13 13 N 1.34780 * 120.00532 * 180.02562 * 11 9 8 14 14 C 1.46496 * 120.00367 * 179.97438 * 13 11 9 15 15 C 1.50701 * 109.47414 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99799 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00288 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99934 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00097 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47144 * 89.99929 * 19 17 15 21 21 H 1.48497 * 109.46990 * 210.00306 * 19 17 15 22 22 H 1.48507 * 109.46940 * 330.00161 * 19 17 15 23 23 C 1.38285 * 120.15526 * 0.27555 * 7 6 5 24 24 C 1.38112 * 120.06955 * 359.45057 * 23 7 6 25 25 H 1.09000 * 109.47281 * 269.99351 * 1 2 3 26 26 H 1.08997 * 109.47467 * 30.00223 * 1 2 3 27 27 H 1.09001 * 109.47132 * 149.99929 * 1 2 3 28 28 H 1.08998 * 109.47408 * 240.00071 * 3 2 1 29 29 H 1.09006 * 109.47105 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.46993 * 119.99856 * 3 2 1 31 31 H 1.07996 * 120.03688 * 0.03704 * 5 4 2 32 32 H 1.08003 * 119.96340 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47445 * 330.00550 * 8 7 6 34 34 H 1.09000 * 109.47150 * 210.00159 * 8 7 6 35 35 H 1.09001 * 109.47060 * 270.00243 * 10 9 8 36 36 H 1.09004 * 109.47073 * 29.99732 * 10 9 8 37 37 H 1.09000 * 109.47212 * 149.99814 * 10 9 8 38 38 H 0.97000 * 119.99501 * 0.02562 * 13 11 9 39 39 H 1.09004 * 109.47298 * 300.00557 * 14 13 11 40 40 H 1.09000 * 109.47160 * 60.00094 * 14 13 11 41 41 H 0.96991 * 120.00138 * 179.97438 * 18 17 15 42 42 H 1.07995 * 119.96621 * 179.70500 * 23 7 6 43 43 H 1.07998 * 120.03663 * 180.27742 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1634 -1.2096 0.0005 5 6 1.4705 -2.4135 0.0005 6 6 2.1642 -3.6077 0.0016 7 6 3.5470 -3.6058 0.0021 8 6 4.3005 -4.9109 0.0039 9 7 4.5452 -5.3352 -1.3768 10 6 5.7664 -4.9130 -2.0674 11 6 3.6471 -6.1140 -2.0117 12 8 2.6338 -6.4649 -1.4385 13 7 3.8724 -6.5049 -3.2817 14 6 2.8964 -7.3519 -3.9717 15 6 3.3822 -7.6433 -5.3681 16 1 4.3242 -7.2383 -5.7076 17 6 2.6249 -8.4276 -6.2120 18 7 1.4781 -8.9211 -5.7984 19 14 3.2275 -8.7893 -7.9427 20 1 4.0477 -10.0272 -7.9326 21 1 2.0620 -8.9750 -8.8439 22 1 4.0520 -7.6532 -8.4273 23 6 4.2400 -2.4091 0.0074 24 6 3.5525 -1.2113 0.0006 25 1 -0.3634 -0.0001 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 2.8241 1.3266 -0.8900 29 1 1.4890 2.0972 0.0005 30 1 2.8241 1.3265 0.8900 31 1 0.3905 -2.4157 -0.0005 32 1 1.6260 -4.5441 0.0020 33 1 3.7113 -5.6700 0.5183 34 1 5.2527 -4.7800 0.5180 35 1 5.5849 -3.9696 -2.5823 36 1 6.5680 -4.7819 -1.3405 37 1 6.0548 -5.6734 -2.7931 38 1 4.6813 -6.2259 -3.7387 39 1 2.7769 -8.2876 -3.4254 40 1 1.9378 -6.8353 -4.0213 41 1 0.9450 -9.4725 -6.3922 42 1 5.3199 -2.4112 0.0126 43 1 4.0943 -0.2770 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787363836.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:33 Heat of formation + Delta-G solvation = -10.242474 kcal Electronic energy + Delta-G solvation = -22864.958287 eV Core-core repulsion = 19523.650931 eV Total energy + Delta-G solvation = -3341.307356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18986 -40.32874 -37.62864 -36.16968 -36.06997 -34.31344 -32.02500 -31.83388 -29.29307 -28.99733 -28.16373 -26.76399 -24.99817 -23.97063 -23.21164 -21.50936 -20.84369 -19.41285 -18.29324 -17.96005 -17.38034 -16.88058 -16.66562 -16.49667 -15.96174 -15.84085 -15.09187 -15.06878 -14.96617 -14.59185 -14.37171 -14.25652 -14.02031 -13.63617 -13.48788 -13.39416 -13.20294 -12.99821 -12.90275 -12.81246 -12.70164 -12.58215 -12.38509 -12.18866 -11.62724 -11.46238 -11.13767 -10.78985 -10.60468 -9.96919 -9.79500 -9.35504 -8.27725 -8.16251 -6.44391 0.57516 0.59599 1.43098 1.46476 1.57477 1.96291 2.25989 2.31387 2.39893 2.99825 3.07005 3.37613 3.91634 4.09030 4.11755 4.19905 4.22936 4.37611 4.47302 4.49649 4.57652 4.68723 4.74033 4.78730 4.82029 4.86574 4.90948 4.94419 4.95800 5.08367 5.19789 5.28195 5.37971 5.48711 5.51321 5.63469 5.79099 5.85792 5.88310 5.98918 6.19197 6.37244 6.55863 6.67439 7.24382 7.27492 7.78049 8.84976 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.003260 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.935695 B = 8586.598962 C = 9161.865038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.647 5.647 3 C 0.093 3.907 4 C 0.206 3.794 5 C -0.217 4.217 6 C -0.069 4.069 7 C -0.173 4.173 8 C 0.180 3.820 9 N -0.626 5.626 10 C 0.076 3.924 11 C 0.688 3.312 12 O -0.644 6.644 13 N -0.726 5.726 14 C 0.288 3.712 15 C -0.554 4.554 16 H 0.082 0.918 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.987 3.013 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.255 1.255 23 C -0.051 4.051 24 C -0.202 4.202 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.058 0.942 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.402 0.598 39 H -0.016 1.016 40 H -0.020 1.020 41 H 0.269 0.731 42 H 0.152 0.848 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.572 21.451 12.022 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.358 5.358 3 C -0.049 4.049 4 C 0.103 3.897 5 C -0.240 4.240 6 C -0.089 4.089 7 C -0.176 4.176 8 C 0.058 3.942 9 N -0.363 5.363 10 C -0.066 4.066 11 C 0.390 3.610 12 O -0.526 6.526 13 N -0.381 5.381 14 C 0.164 3.836 15 C -0.592 4.592 16 H 0.100 0.900 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.810 3.190 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.179 1.179 23 C -0.070 4.070 24 C -0.225 4.225 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.085 0.915 38 H 0.239 0.761 39 H 0.002 0.998 40 H -0.002 1.002 41 H 0.078 0.922 42 H 0.170 0.830 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.609 21.277 12.366 25.759 hybrid contribution -0.425 -0.633 -0.977 1.240 sum 7.184 20.643 11.389 24.647 Atomic orbital electron populations 1.21763 0.78973 1.03113 1.01596 1.46581 1.05689 1.03343 1.80227 1.21753 0.97533 0.84100 1.01516 1.18001 0.92072 0.85812 0.93819 1.20747 0.99774 0.91541 1.11900 1.20939 0.95054 0.96912 0.95977 1.20108 0.93397 0.96198 1.07897 1.20214 1.00838 0.92243 0.80931 1.47169 1.21703 1.52429 1.14989 1.21957 0.85821 1.00136 0.98686 1.16344 0.83325 0.79474 0.81907 1.90800 1.30313 1.63689 1.67842 1.45456 1.25780 1.54657 1.12240 1.18352 0.86758 0.87382 0.91072 1.21588 1.07417 1.32838 0.97368 0.89971 1.26093 0.94615 0.94811 1.04128 1.70153 1.13980 1.34241 1.38635 0.85125 0.77848 0.79168 0.76866 1.19443 1.20909 1.17881 1.21037 1.00585 0.90270 0.95127 1.20876 0.91600 0.99430 1.10554 0.92840 0.89493 0.92592 0.92694 0.89001 0.92124 0.86382 0.88782 0.92250 0.86037 0.92339 0.87239 0.91541 0.76125 0.99840 1.00200 0.92247 0.83004 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.44 10.16 127.77 1.30 2.73 16 2 N -0.65 -12.63 3.41 -747.29 -2.55 -15.18 16 3 C 0.09 1.15 9.40 127.77 1.20 2.35 16 4 C 0.21 5.15 6.55 38.21 0.25 5.40 16 5 C -0.22 -6.50 9.21 22.40 0.21 -6.29 16 6 C -0.07 -2.35 9.69 22.25 0.22 -2.13 16 7 C -0.17 -4.92 5.46 -19.84 -0.11 -5.03 16 8 C 0.18 5.01 5.57 85.63 0.48 5.48 16 9 N -0.63 -20.08 2.86 -869.28 -2.48 -22.56 16 10 C 0.08 1.64 10.25 127.77 1.31 2.95 16 11 C 0.69 31.07 8.28 179.06 1.48 32.55 16 12 O -0.64 -35.00 15.44 -4.01 -0.06 -35.06 16 13 N -0.73 -33.80 5.41 -482.29 -2.61 -36.41 16 14 C 0.29 16.79 5.43 85.63 0.46 17.25 16 15 C -0.55 -31.33 9.28 25.60 0.24 -31.09 16 16 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 17 C 0.00 0.17 5.46 84.65 0.46 0.63 16 18 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 19 Si 0.99 43.22 29.54 68.60 2.03 45.24 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 C -0.05 -1.12 9.69 22.25 0.22 -0.90 16 24 C -0.20 -4.38 9.31 22.40 0.21 -4.17 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.09 1.00 7.92 -2.39 -0.02 0.98 16 27 H 0.06 1.07 6.20 -2.39 -0.01 1.05 16 28 H 0.05 0.67 7.95 -2.39 -0.02 0.65 16 29 H 0.09 0.74 7.80 -2.38 -0.02 0.72 16 30 H 0.06 0.66 7.95 -2.39 -0.02 0.64 16 31 H 0.12 3.35 6.14 -2.91 -0.02 3.34 16 32 H 0.09 3.76 7.57 -2.91 -0.02 3.74 16 33 H 0.06 1.98 7.36 -2.39 -0.02 1.96 16 34 H 0.12 2.22 7.83 -2.39 -0.02 2.20 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.11 1.47 7.89 -2.38 -0.02 1.45 16 37 H 0.07 1.47 6.36 -2.39 -0.02 1.46 16 38 H 0.40 15.71 6.05 -92.71 -0.56 15.15 16 39 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 40 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 41 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.14 2.29 6.73 -2.91 -0.02 2.27 16 Total: -1.00 -80.32 355.28 2.97 -77.34 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.45 Total: 24.35 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 7.92 Total: 19.73 kcal Atomic # 7 Polarization: -124.25 SS G_CDS: -7.36 Total: -131.61 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.06 Total: -35.06 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -80.32 2.97 -77.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787363836.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.099 kcal (2) G-P(sol) polarization free energy of solvation -80.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds