Wall clock time and date at job start Tue Mar 31 2020 07:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40073 * 126.05629 * 2 1 4 4 C 1.30825 * 108.37268 * 180.02562 * 3 2 1 5 5 C 1.40259 * 108.33249 * 0.02562 * 4 3 2 6 6 N 1.40760 * 126.07568 * 179.97438 * 5 4 3 7 7 C 1.34770 * 120.00534 * 0.03075 * 6 5 4 8 8 O 1.21309 * 119.99781 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00432 * 179.97438 * 7 6 5 10 10 C 1.52994 * 109.47498 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47468 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47077 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46981 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99948 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99954 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99780 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00289 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47465 * 89.99770 * 17 15 13 19 19 H 1.48502 * 109.47481 * 209.99983 * 17 15 13 20 20 H 1.48501 * 109.47143 * 329.99655 * 17 15 13 21 21 C 1.35754 * 107.84063 * 0.22586 * 5 4 3 22 22 C 1.50700 * 126.21639 * 179.77025 * 21 5 4 23 23 C 1.52999 * 117.49964 * 312.30048 * 22 21 5 24 24 C 1.53002 * 117.49757 * 243.63822 * 22 21 5 25 25 H 1.08997 * 109.47593 * 95.16366 * 1 2 3 26 26 H 1.09003 * 109.46838 * 215.17320 * 1 2 3 27 27 H 1.09000 * 109.46655 * 335.16362 * 1 2 3 28 28 H 1.07994 * 125.83135 * 180.02562 * 4 3 2 29 29 H 0.97013 * 119.99794 * 180.02562 * 6 5 4 30 30 H 1.09003 * 109.47046 * 299.99842 * 9 7 6 31 31 H 1.09004 * 109.47353 * 59.99279 * 9 7 6 32 32 H 1.09003 * 109.46953 * 300.00034 * 10 9 7 33 33 H 1.09004 * 109.47297 * 59.99380 * 10 9 7 34 34 H 1.08999 * 109.46830 * 300.00122 * 11 10 9 35 35 H 1.09000 * 109.46644 * 60.00380 * 11 10 9 36 36 H 1.08999 * 109.47700 * 299.99969 * 12 11 10 37 37 H 1.09007 * 109.47129 * 60.00778 * 12 11 10 38 38 H 0.97005 * 119.99891 * 180.02562 * 16 15 13 39 39 H 1.09001 * 115.54931 * 97.97479 * 22 21 5 40 40 H 1.09006 * 117.49958 * 0.02562 * 23 22 21 41 41 H 1.08996 * 117.49589 * 145.02125 * 23 22 21 42 42 H 1.08995 * 117.49938 * 214.98230 * 24 22 21 43 43 H 1.08999 * 117.50140 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2894 1.1324 0.0000 4 6 3.5359 0.7350 -0.0006 5 6 3.5518 -0.6675 -0.0015 6 7 4.6987 -1.4834 -0.0029 7 6 5.9244 -0.9231 -0.0027 8 8 6.0392 0.2846 -0.0018 9 6 7.1524 -1.7967 -0.0035 10 6 8.4042 -0.9170 -0.0037 11 6 9.6509 -1.8039 -0.0040 12 6 10.9026 -0.9242 -0.0048 13 6 12.1306 -1.7978 -0.0044 14 1 12.0284 -2.8729 -0.0040 15 6 13.3845 -1.2245 -0.0045 16 7 14.4561 -1.9869 -0.0047 17 14 13.5613 0.6351 -0.0045 18 1 13.6083 1.1279 1.3956 19 1 14.8151 1.0132 -0.7046 20 1 12.4011 1.2426 -0.7045 21 6 2.2643 -1.0980 -0.0066 22 6 1.8055 -2.5334 -0.0143 23 6 2.4628 -3.4799 -1.0207 24 6 1.0193 -3.0173 -1.2344 25 1 -0.3634 -0.0925 -1.0234 26 1 -0.3633 -0.8401 0.5920 27 1 -0.3633 0.9326 0.4317 28 1 4.4042 1.3772 -0.0003 29 1 4.6070 -2.4492 -0.0038 30 1 7.1508 -2.4266 0.8861 31 1 7.1505 -2.4255 -0.8939 32 1 8.4056 -0.2874 -0.8935 33 1 8.4064 -0.2879 0.8864 34 1 9.6492 -2.4332 0.8860 35 1 9.6489 -2.4332 -0.8940 36 1 10.9041 -0.2952 -0.8950 37 1 10.9049 -0.2946 0.8850 38 1 15.3383 -1.5835 -0.0044 39 1 1.5300 -2.9441 0.9571 40 1 3.2275 -3.0644 -1.6771 41 1 2.6195 -4.5133 -0.7116 42 1 0.2270 -3.7466 -1.0658 43 1 0.8344 -2.2976 -2.0318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807260299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:10 Heat of formation + Delta-G solvation = 50.248510 kcal Electronic energy + Delta-G solvation = -22310.389694 eV Core-core repulsion = 18971.705423 eV Total energy + Delta-G solvation = -3338.684271 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.72624 -39.56427 -37.51745 -35.27453 -34.75211 -32.98389 -32.50813 -30.41313 -29.49067 -26.91510 -25.65412 -23.66422 -23.24714 -22.44413 -21.32383 -20.15434 -19.98411 -19.81701 -17.48251 -16.81493 -16.51298 -16.47276 -15.94050 -15.63497 -15.15975 -14.61110 -14.23744 -14.20301 -14.01053 -13.86689 -13.13417 -12.99200 -12.64077 -12.43489 -12.32969 -12.09136 -12.08131 -11.73382 -11.35088 -11.21008 -11.11103 -10.82054 -10.72690 -10.67259 -10.52334 -9.93331 -9.79230 -9.62789 -9.46051 -9.42250 -9.10242 -8.47583 -7.84421 -5.98923 -3.96298 1.46208 2.12064 2.33327 3.00181 3.01856 3.23017 3.37197 3.44224 3.50340 3.97909 4.24825 4.30477 4.41817 4.51895 4.63853 4.74712 4.81992 5.02651 5.07142 5.08792 5.16139 5.26216 5.28400 5.36154 5.42543 5.48229 5.54269 5.57207 5.77091 6.02573 6.03672 6.15427 6.42345 6.65496 6.69624 6.76295 6.83950 7.00798 7.29688 7.40156 7.52923 7.53067 7.86590 8.15784 8.59938 9.06127 9.64568 11.14544 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031896 B = 0.002524 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.652068 B =11090.979508 C =11856.874424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.371 5.371 3 N -0.286 5.286 4 C 0.052 3.948 5 C 0.017 3.983 6 N -0.649 5.649 7 C 0.513 3.487 8 O -0.525 6.525 9 C -0.135 4.135 10 C -0.107 4.107 11 C -0.102 4.102 12 C -0.016 4.016 13 C -0.519 4.519 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.264 1.264 21 C 0.067 3.933 22 C -0.100 4.100 23 C -0.165 4.165 24 C -0.166 4.166 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.208 0.792 29 H 0.409 0.591 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.016 0.984 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.646 -3.212 -0.742 32.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.156 5.156 3 N -0.107 5.107 4 C -0.134 4.134 5 C -0.088 4.088 6 N -0.295 5.295 7 C 0.302 3.698 8 O -0.400 6.400 9 C -0.175 4.175 10 C -0.145 4.145 11 C -0.140 4.140 12 C -0.053 4.053 13 C -0.557 4.557 14 H 0.089 0.911 15 C -0.137 4.137 16 N -0.546 5.546 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.061 4.061 22 C -0.120 4.120 23 C -0.203 4.203 24 C -0.203 4.203 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.224 0.776 29 H 0.244 0.756 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.141 0.859 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -33.240 -1.321 -0.737 33.274 hybrid contribution 0.643 -0.282 0.057 0.705 sum -32.597 -1.604 -0.680 32.643 Atomic orbital electron populations 1.21769 0.74040 1.04374 1.03009 1.48163 1.06175 1.02765 1.58482 1.77433 1.01391 1.07732 1.24155 1.24528 0.95495 0.93497 0.99922 1.17451 0.85765 0.91208 1.14371 1.43104 1.03433 1.09350 1.73598 1.21199 0.84061 0.89522 0.75041 1.90580 1.86183 1.15161 1.48076 1.21763 0.92246 0.99077 1.04440 1.21497 0.92062 0.97822 1.03073 1.21474 0.93565 0.98015 1.00954 1.19578 0.93537 0.95860 0.96342 1.21184 0.89261 0.94783 1.50462 0.91115 1.25047 0.95925 0.98059 0.94634 1.69924 0.97882 1.35234 1.51519 0.86771 0.77597 0.86377 0.78537 1.20327 1.21493 1.18863 1.19457 0.89387 0.88839 1.08450 1.20391 1.06736 0.88680 0.96187 1.23097 0.96573 0.99339 1.01304 1.23009 0.95176 1.03385 0.98757 0.91021 0.89799 0.89204 0.77574 0.75570 0.88706 0.88734 0.91643 0.91644 0.92832 0.92819 0.96597 0.97036 0.92839 0.85928 0.88081 0.87376 0.87865 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.63 11.23 59.85 0.67 1.30 16 2 N -0.37 -3.81 4.04 -63.57 -0.26 -4.07 16 3 N -0.29 -3.85 12.56 30.70 0.39 -3.47 16 4 C 0.05 0.74 10.84 -17.22 -0.19 0.55 16 5 C 0.02 0.20 6.78 -83.88 -0.57 -0.37 16 6 N -0.65 -6.84 5.36 -10.04 -0.05 -6.89 16 7 C 0.51 6.74 7.80 -10.99 -0.09 6.65 16 8 O -0.52 -8.74 13.14 5.53 0.07 -8.67 16 9 C -0.14 -1.62 5.70 -27.89 -0.16 -1.78 16 10 C -0.11 -1.74 4.50 -26.73 -0.12 -1.86 16 11 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 12 C -0.02 -0.39 4.04 -27.89 -0.11 -0.50 16 13 C -0.52 -15.05 9.66 -34.44 -0.33 -15.39 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.91 -28.41 13.96 55.43 0.77 -27.64 16 17 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 21 C 0.07 0.65 6.43 -81.72 -0.53 0.13 16 22 C -0.10 -0.60 5.59 -91.77 -0.51 -1.11 16 23 C -0.17 -0.81 8.95 -26.69 -0.24 -1.05 16 24 C -0.17 -0.76 10.24 -26.69 -0.27 -1.04 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.30 7.97 -51.93 -0.41 -0.12 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.21 3.13 5.92 -52.49 -0.31 2.81 16 29 H 0.41 3.03 7.17 -40.81 -0.29 2.74 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.13 8.10 -51.93 -0.42 0.70 16 33 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 37 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 39 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.61 7.85 -51.93 -0.41 0.20 16 41 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -35.74 357.27 -7.89 -43.63 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.85 Total: -1.24 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -2.68 Total: -14.77 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.85 Total: -42.07 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.07 Total: -8.67 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.74 -7.89 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807260299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.877 kcal (2) G-P(sol) polarization free energy of solvation -35.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds