Wall clock time and date at job start Tue Mar 31 2020 07:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40073 * 126.05629 * 2 1 4 4 C 1.30825 * 108.37268 * 180.02562 * 3 2 1 5 5 C 1.40259 * 108.33249 * 0.02562 * 4 3 2 6 6 N 1.40760 * 126.07568 * 179.97438 * 5 4 3 7 7 C 1.34770 * 120.00534 * 0.03075 * 6 5 4 8 8 O 1.21309 * 119.99781 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00432 * 179.97438 * 7 6 5 10 10 C 1.52994 * 109.47498 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47468 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47077 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46981 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99948 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99954 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99780 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00289 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47465 * 89.99770 * 17 15 13 19 19 H 1.48502 * 109.47481 * 209.99983 * 17 15 13 20 20 H 1.48501 * 109.47143 * 329.99655 * 17 15 13 21 21 C 1.35754 * 107.84063 * 0.22586 * 5 4 3 22 22 C 1.50700 * 126.21639 * 179.77025 * 21 5 4 23 23 C 1.52999 * 117.49964 * 312.30048 * 22 21 5 24 24 C 1.53002 * 117.49757 * 243.63822 * 22 21 5 25 25 H 1.08997 * 109.47593 * 95.16366 * 1 2 3 26 26 H 1.09003 * 109.46838 * 215.17320 * 1 2 3 27 27 H 1.09000 * 109.46655 * 335.16362 * 1 2 3 28 28 H 1.07994 * 125.83135 * 180.02562 * 4 3 2 29 29 H 0.97013 * 119.99794 * 180.02562 * 6 5 4 30 30 H 1.09003 * 109.47046 * 299.99842 * 9 7 6 31 31 H 1.09004 * 109.47353 * 59.99279 * 9 7 6 32 32 H 1.09003 * 109.46953 * 300.00034 * 10 9 7 33 33 H 1.09004 * 109.47297 * 59.99380 * 10 9 7 34 34 H 1.08999 * 109.46830 * 300.00122 * 11 10 9 35 35 H 1.09000 * 109.46644 * 60.00380 * 11 10 9 36 36 H 1.08999 * 109.47700 * 299.99969 * 12 11 10 37 37 H 1.09007 * 109.47129 * 60.00778 * 12 11 10 38 38 H 0.97005 * 119.99891 * 180.02562 * 16 15 13 39 39 H 1.09001 * 115.54931 * 97.97479 * 22 21 5 40 40 H 1.09006 * 117.49958 * 0.02562 * 23 22 21 41 41 H 1.08996 * 117.49589 * 145.02125 * 23 22 21 42 42 H 1.08995 * 117.49938 * 214.98230 * 24 22 21 43 43 H 1.08999 * 117.50140 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2894 1.1324 0.0000 4 6 3.5359 0.7350 -0.0006 5 6 3.5518 -0.6675 -0.0015 6 7 4.6987 -1.4834 -0.0029 7 6 5.9244 -0.9231 -0.0027 8 8 6.0392 0.2846 -0.0018 9 6 7.1524 -1.7967 -0.0035 10 6 8.4042 -0.9170 -0.0037 11 6 9.6509 -1.8039 -0.0040 12 6 10.9026 -0.9242 -0.0048 13 6 12.1306 -1.7978 -0.0044 14 1 12.0284 -2.8729 -0.0040 15 6 13.3845 -1.2245 -0.0045 16 7 14.4561 -1.9869 -0.0047 17 14 13.5613 0.6351 -0.0045 18 1 13.6083 1.1279 1.3956 19 1 14.8151 1.0132 -0.7046 20 1 12.4011 1.2426 -0.7045 21 6 2.2643 -1.0980 -0.0066 22 6 1.8055 -2.5334 -0.0143 23 6 2.4628 -3.4799 -1.0207 24 6 1.0193 -3.0173 -1.2344 25 1 -0.3634 -0.0925 -1.0234 26 1 -0.3633 -0.8401 0.5920 27 1 -0.3633 0.9326 0.4317 28 1 4.4042 1.3772 -0.0003 29 1 4.6070 -2.4492 -0.0038 30 1 7.1508 -2.4266 0.8861 31 1 7.1505 -2.4255 -0.8939 32 1 8.4056 -0.2874 -0.8935 33 1 8.4064 -0.2879 0.8864 34 1 9.6492 -2.4332 0.8860 35 1 9.6489 -2.4332 -0.8940 36 1 10.9041 -0.2952 -0.8950 37 1 10.9049 -0.2946 0.8850 38 1 15.3383 -1.5835 -0.0044 39 1 1.5300 -2.9441 0.9571 40 1 3.2275 -3.0644 -1.6771 41 1 2.6195 -4.5133 -0.7116 42 1 0.2270 -3.7466 -1.0658 43 1 0.8344 -2.2976 -2.0318 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807260299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:09 Heat of formation + Delta-G solvation = 26.749490 kcal Electronic energy + Delta-G solvation = -22311.408688 eV Core-core repulsion = 18971.705423 eV Total energy + Delta-G solvation = -3339.703265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.55710 -40.56440 -37.97331 -36.73190 -35.80763 -34.59947 -33.67693 -31.94304 -30.44045 -28.04695 -26.90499 -24.42991 -24.04919 -23.37243 -22.41644 -21.63337 -20.99386 -20.65771 -18.83873 -18.18489 -17.66704 -17.19663 -16.90381 -16.48577 -16.29940 -15.72280 -15.52007 -15.26819 -15.10357 -14.75429 -14.63334 -14.04975 -13.69554 -13.59204 -13.53917 -13.43845 -12.91088 -12.84423 -12.39489 -12.30865 -12.04867 -12.03193 -11.83275 -11.73922 -11.54256 -11.46695 -11.30070 -11.23364 -11.22896 -10.76943 -10.74282 -10.25303 -8.69924 -8.28241 -6.30788 0.65953 1.33139 1.35815 1.37300 1.43648 1.50104 2.08045 2.18779 2.37135 2.77190 3.07335 3.43045 3.67630 3.78369 3.92676 3.95983 4.03468 4.19719 4.25368 4.37036 4.41577 4.49643 4.65566 4.67559 4.68552 4.75694 4.79376 4.80528 4.89881 5.00377 5.10279 5.13726 5.18177 5.23650 5.25634 5.33377 5.63949 5.69366 5.70943 5.75878 6.02762 6.31566 6.46186 6.65121 6.77370 7.24718 7.33961 8.88256 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031896 B = 0.002524 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.652068 B =11090.979508 C =11856.874424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.366 5.366 3 N -0.318 5.318 4 C 0.027 3.973 5 C -0.014 4.014 6 N -0.629 5.629 7 C 0.510 3.490 8 O -0.569 6.569 9 C -0.125 4.125 10 C -0.098 4.098 11 C -0.093 4.093 12 C -0.018 4.018 13 C -0.528 4.528 14 H 0.038 0.962 15 C 0.003 3.997 16 N -0.951 5.951 17 Si 0.946 3.054 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.252 1.252 21 C 0.088 3.912 22 C -0.110 4.110 23 C -0.164 4.164 24 C -0.154 4.154 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.186 0.814 29 H 0.425 0.575 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.013 0.987 37 H 0.012 0.988 38 H 0.265 0.735 39 H 0.143 0.857 40 H 0.087 0.913 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.452 -4.387 -0.695 35.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.151 5.151 3 N -0.141 5.141 4 C -0.159 4.159 5 C -0.118 4.118 6 N -0.276 5.276 7 C 0.299 3.701 8 O -0.447 6.447 9 C -0.164 4.164 10 C -0.136 4.136 11 C -0.131 4.131 12 C -0.056 4.056 13 C -0.566 4.566 14 H 0.057 0.943 15 C -0.194 4.194 16 N -0.592 5.592 17 Si 0.770 3.230 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.176 1.176 21 C -0.042 4.042 22 C -0.129 4.129 23 C -0.201 4.201 24 C -0.191 4.191 25 H 0.106 0.894 26 H 0.131 0.869 27 H 0.111 0.889 28 H 0.202 0.798 29 H 0.264 0.736 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.030 0.970 38 H 0.074 0.926 39 H 0.161 0.839 40 H 0.106 0.894 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -36.096 -2.524 -0.692 36.191 hybrid contribution 1.397 -0.013 0.025 1.397 sum -34.699 -2.537 -0.667 34.798 Atomic orbital electron populations 1.22192 0.71467 1.05868 1.04735 1.48622 1.07611 1.02176 1.56700 1.77343 1.01647 1.09544 1.25579 1.24321 0.95332 0.94710 1.01494 1.17599 0.87054 0.90612 1.16553 1.42837 1.02390 1.10000 1.72419 1.21368 0.85027 0.89008 0.74664 1.90584 1.86802 1.17000 1.50342 1.21657 0.89450 0.98324 1.07013 1.21291 0.92796 0.97622 1.01919 1.21332 0.92621 0.97648 1.01487 1.19588 0.93989 0.95924 0.96056 1.21554 0.91295 0.94041 1.49735 0.94332 1.25986 0.95624 1.03345 0.94404 1.70062 0.98569 1.37527 1.53011 0.85709 0.78053 0.80082 0.79129 1.19302 1.20824 1.17610 1.20042 0.88482 0.90459 1.05237 1.20541 1.08256 0.86298 0.97808 1.23207 0.96547 1.00059 1.00324 1.23087 0.95694 1.03173 0.97152 0.89370 0.86908 0.88932 0.79772 0.73627 0.86103 0.86095 0.92922 0.92864 0.92286 0.92303 0.96849 0.96967 0.92569 0.83920 0.89403 0.85115 0.85449 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 11.23 127.77 1.44 2.32 16 2 N -0.37 -7.09 4.04 -355.02 -1.43 -8.52 16 3 N -0.32 -8.80 12.56 -56.77 -0.71 -9.52 16 4 C 0.03 0.79 10.84 85.33 0.92 1.71 16 5 C -0.01 -0.33 6.78 37.62 0.26 -0.07 16 6 N -0.63 -12.49 5.36 -304.05 -1.63 -14.12 16 7 C 0.51 13.06 7.80 87.66 0.68 13.74 16 8 O -0.57 -19.55 13.14 -3.12 -0.04 -19.60 16 9 C -0.12 -2.73 5.70 29.85 0.17 -2.56 16 10 C -0.10 -3.11 4.50 30.59 0.14 -2.97 16 11 C -0.09 -3.51 5.15 30.59 0.16 -3.35 16 12 C -0.02 -0.88 4.04 29.85 0.12 -0.76 16 13 C -0.53 -31.08 9.66 25.60 0.25 -30.83 16 14 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 15 C 0.00 0.18 5.47 84.65 0.46 0.64 16 16 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 17 Si 0.95 46.27 27.47 68.60 1.88 48.15 16 18 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 20 H -0.25 -11.75 6.54 99.48 0.65 -11.10 16 21 C 0.09 1.56 6.43 41.37 0.27 1.83 16 22 C -0.11 -0.93 5.59 -11.54 -0.06 -1.00 16 23 C -0.16 -1.03 8.95 30.62 0.27 -0.76 16 24 C -0.15 -0.83 10.24 30.62 0.31 -0.52 16 25 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.11 0.39 7.97 -2.39 -0.02 0.37 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.19 6.15 5.92 -2.91 -0.02 6.13 16 29 H 0.42 5.25 7.17 -92.70 -0.66 4.59 16 30 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 33 H 0.05 1.81 8.10 -2.38 -0.02 1.79 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 37 H 0.01 0.58 7.57 -2.38 -0.02 0.56 16 38 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 39 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.09 0.83 7.85 -2.38 -0.02 0.81 16 41 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -80.83 357.27 4.03 -76.80 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.28 Total: 9.74 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 5.38 Total: -22.57 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -3.48 Total: -92.53 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.04 Total: -19.60 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.88 Total: 48.15 kcal Total: -80.83 4.03 -76.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807260299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.552 kcal (2) G-P(sol) polarization free energy of solvation -80.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds