Wall clock time and date at job start Tue Mar 31 2020 07:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99774 * 2 1 4 4 C 1.39895 * 120.00190 * 180.02562 * 2 1 3 5 5 C 1.38889 * 120.00358 * 174.22823 * 4 2 1 6 6 C 1.38059 * 119.99460 * 179.79146 * 5 4 2 7 7 C 1.38853 * 120.00266 * 0.46117 * 6 5 4 8 8 N 1.40155 * 119.99727 * 179.76737 * 7 6 5 9 9 C 1.34778 * 120.00211 * 215.15362 * 8 7 6 10 10 O 1.21297 * 119.99901 * 355.54390 * 9 8 7 11 11 C 1.50695 * 119.99949 * 175.54456 * 9 8 7 12 12 C 1.53002 * 109.46966 * 180.02562 * 11 9 8 13 13 N 1.46904 * 109.47007 * 179.97438 * 12 11 9 14 14 C 1.46897 * 111.00180 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47183 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00276 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99815 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00209 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00288 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47440 * 89.99770 * 19 17 15 21 21 H 1.48497 * 109.47639 * 210.00176 * 19 17 15 22 22 H 1.48506 * 109.46988 * 329.99832 * 19 17 15 23 23 C 1.38851 * 120.00925 * 359.79178 * 7 6 5 24 24 C 1.38055 * 120.00731 * 359.97438 * 23 7 6 25 25 H 1.09003 * 109.46556 * 269.99776 * 1 2 3 26 26 H 1.09004 * 109.47063 * 29.99883 * 1 2 3 27 27 H 1.08999 * 109.46699 * 149.99976 * 1 2 3 28 28 H 1.09003 * 109.46731 * 185.02781 * 3 2 1 29 29 H 1.08998 * 109.47187 * 305.02322 * 3 2 1 30 30 H 1.08997 * 109.47048 * 65.02923 * 3 2 1 31 31 H 1.07997 * 120.00236 * 0.02562 * 5 4 2 32 32 H 1.08004 * 120.00074 * 180.23283 * 6 5 4 33 33 H 0.97002 * 119.99646 * 35.15319 * 8 7 6 34 34 H 1.09003 * 109.47134 * 299.99929 * 11 9 8 35 35 H 1.09001 * 109.47531 * 59.99518 * 11 9 8 36 36 H 1.08995 * 109.46830 * 299.99347 * 12 11 9 37 37 H 1.09001 * 109.47004 * 60.00297 * 12 11 9 38 38 H 1.00906 * 110.99927 * 56.04389 * 13 12 11 39 39 H 1.09002 * 109.46871 * 300.00161 * 14 13 12 40 40 H 1.08996 * 109.47145 * 59.99930 * 14 13 12 41 41 H 0.96996 * 120.00451 * 180.02562 * 18 17 15 42 42 H 1.08003 * 119.99993 * 179.97438 * 23 7 6 43 43 H 1.07997 * 120.01133 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1645 -1.2115 -0.0005 5 6 3.5481 -1.2145 -0.1215 6 6 4.2387 -2.4100 -0.1177 7 6 3.5492 -3.6097 -0.0026 8 7 4.2499 -4.8236 -0.0036 9 6 3.7080 -5.9141 -0.5813 10 8 2.5815 -5.8669 -1.0285 11 6 4.5017 -7.1919 -0.6714 12 6 3.6621 -8.2657 -1.3666 13 7 4.4361 -9.5112 -1.4550 14 6 3.6597 -10.5675 -2.1179 15 6 4.4839 -11.8270 -2.1895 16 1 5.4843 -11.8415 -1.7829 17 6 3.9609 -12.9608 -2.7742 18 7 4.6800 -14.0602 -2.8363 19 14 2.2303 -12.9360 -3.4768 20 1 2.2808 -12.5250 -4.9029 21 1 1.6344 -14.2923 -3.3734 22 1 1.3996 -11.9709 -2.7127 23 6 2.1655 -3.6072 0.1131 24 6 1.4750 -2.4117 0.1142 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 3.2657 1.0715 -0.0901 29 1 1.8684 1.8783 -0.8416 30 1 2.0034 1.8003 0.9316 31 1 4.0841 -0.2816 -0.2147 32 1 5.3149 -2.4123 -0.2080 33 1 5.1249 -4.8787 0.4114 34 1 5.4115 -7.0148 -1.2449 35 1 4.7642 -7.5282 0.3316 36 1 2.7522 -8.4429 -0.7934 37 1 3.4002 -7.9291 -2.3697 38 1 4.7465 -9.8096 -0.5425 39 1 2.7500 -10.7608 -1.5494 40 1 3.3968 -10.2470 -3.1260 41 1 4.3122 -14.8577 -3.2479 42 1 1.6293 -4.5404 0.2022 43 1 0.3987 -2.4096 0.2037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819269802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:01 Heat of formation + Delta-G solvation = 8.359964 kcal Electronic energy + Delta-G solvation = -21840.784676 eV Core-core repulsion = 18500.283982 eV Total energy + Delta-G solvation = -3340.500694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59833 -39.22125 -36.72066 -35.58860 -34.19881 -32.63577 -31.40224 -30.83337 -29.06014 -28.49722 -26.76956 -24.87038 -22.95738 -22.58960 -21.12077 -20.96031 -20.15090 -18.11699 -17.14134 -16.96023 -16.63110 -16.04840 -15.60899 -15.40653 -14.82276 -14.76030 -14.34439 -14.08007 -13.90053 -13.71156 -13.05561 -12.97840 -12.91600 -12.82898 -12.67192 -12.39698 -12.30584 -12.29452 -12.11049 -11.29119 -11.23136 -10.96249 -10.66302 -10.57759 -10.45979 -9.86979 -9.71512 -9.28004 -9.25939 -9.06564 -8.56701 -7.48634 -7.27492 -6.04175 -4.02186 1.25105 1.34265 2.62088 2.81023 3.04776 3.32507 3.39268 3.43487 3.72874 4.44898 4.51984 4.58643 4.69193 4.81133 4.92919 4.98053 5.09039 5.17076 5.22878 5.24081 5.27227 5.29088 5.34496 5.39404 5.40245 5.62624 5.75367 5.83462 5.91709 6.03622 6.23320 6.28979 6.37493 6.42930 6.77315 6.82071 6.95617 7.05020 7.23243 7.34678 7.61637 7.87731 8.14281 8.33218 8.65725 9.03100 9.57946 11.08917 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.037316 B = 0.002235 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.163165 B =12523.795184 C =13122.892776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.642 5.642 3 C 0.091 3.909 4 C 0.197 3.803 5 C -0.183 4.183 6 C -0.097 4.097 7 C 0.090 3.910 8 N -0.676 5.676 9 C 0.515 3.485 10 O -0.523 6.523 11 C -0.135 4.135 12 C 0.071 3.929 13 N -0.682 5.682 14 C 0.164 3.836 15 C -0.516 4.516 16 H 0.079 0.921 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.877 3.123 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.267 1.267 23 C -0.071 4.071 24 C -0.178 4.178 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.409 0.591 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.028 0.972 37 H 0.072 0.928 38 H 0.334 0.666 39 H -0.014 1.014 40 H 0.023 0.977 41 H 0.264 0.736 42 H 0.139 0.861 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 31.954 9.161 33.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.356 5.356 3 C -0.052 4.052 4 C 0.096 3.904 5 C -0.205 4.205 6 C -0.118 4.118 7 C -0.005 4.005 8 N -0.322 5.322 9 C 0.303 3.697 10 O -0.398 6.398 11 C -0.176 4.176 12 C -0.060 4.060 13 N -0.313 5.313 14 C 0.036 3.964 15 C -0.555 4.555 16 H 0.097 0.903 17 C -0.134 4.134 18 N -0.539 5.539 19 Si 0.704 3.296 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.091 4.091 24 C -0.201 4.201 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.244 0.756 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.151 0.849 39 H 0.003 0.997 40 H 0.041 0.959 41 H 0.073 0.927 42 H 0.157 0.843 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.375 32.075 8.158 33.385 hybrid contribution -1.075 -0.264 0.431 1.188 sum -5.451 31.811 8.589 33.398 Atomic orbital electron populations 1.21585 0.79594 1.02592 1.01040 1.46282 1.04872 1.03010 1.81393 1.21661 0.97701 0.85024 1.00793 1.17849 0.91216 0.85673 0.95625 1.20459 0.92158 0.97974 1.09943 1.20650 0.99567 0.90790 1.00751 1.17584 0.91714 0.85097 1.06080 1.43551 1.22110 1.08478 1.58024 1.21064 0.87350 0.85054 0.76244 1.90692 1.18910 1.83902 1.46320 1.21656 1.00379 0.91965 1.03558 1.21642 0.93884 0.90203 1.00225 1.60499 1.41206 1.03970 1.25582 1.19994 0.92393 0.90094 0.93883 1.21057 1.02451 0.93088 1.38866 0.90258 1.24905 0.97503 0.95346 0.95608 1.69895 1.37185 1.01851 1.45018 0.86825 0.85310 0.77388 0.80044 1.20097 1.21208 1.19162 1.21096 0.92856 0.98505 0.96666 1.20600 0.99749 0.90607 1.09159 0.93550 0.91722 0.91293 0.90432 0.92817 0.93198 0.85651 0.85759 0.75586 0.87730 0.88839 0.95405 0.90927 0.84914 0.99662 0.95875 0.92651 0.84323 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 10.11 59.85 0.60 1.20 16 2 N -0.64 -5.18 3.41 -187.48 -0.64 -5.82 16 3 C 0.09 0.50 10.63 59.85 0.64 1.14 16 4 C 0.20 1.98 6.54 -83.69 -0.55 1.43 16 5 C -0.18 -1.68 9.31 -39.41 -0.37 -2.05 16 6 C -0.10 -0.92 9.96 -39.42 -0.39 -1.31 16 7 C 0.09 1.04 6.30 -83.60 -0.53 0.51 16 8 N -0.68 -7.07 5.34 -9.82 -0.05 -7.12 16 9 C 0.51 6.92 7.67 -10.99 -0.08 6.84 16 10 O -0.52 -9.00 13.43 5.54 0.07 -8.93 16 11 C -0.14 -1.72 5.96 -27.88 -0.17 -1.89 16 12 C 0.07 1.24 4.97 -3.82 -0.02 1.22 16 13 N -0.68 -14.15 6.49 -115.06 -0.75 -14.89 16 14 C 0.16 4.11 4.51 -4.98 -0.02 4.09 16 15 C -0.52 -14.99 9.87 -34.44 -0.34 -15.33 16 16 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 17 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 18 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 19 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 23 C -0.07 -0.89 8.69 -39.42 -0.34 -1.24 16 24 C -0.18 -1.97 9.16 -39.41 -0.36 -2.33 16 25 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.30 8.07 -51.93 -0.42 -0.12 16 27 H 0.07 0.45 6.44 -51.93 -0.33 0.11 16 28 H 0.08 0.38 5.31 -51.93 -0.28 0.10 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.13 0.87 5.74 -52.49 -0.30 0.57 16 32 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.41 2.87 8.82 -40.82 -0.36 2.51 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.03 0.51 8.10 -51.93 -0.42 0.09 16 37 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 38 H 0.33 6.48 8.72 -39.29 -0.34 6.14 16 39 H -0.01 -0.36 7.20 -51.93 -0.37 -0.74 16 40 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 42 H 0.14 1.97 6.23 -52.48 -0.33 1.64 16 43 H 0.12 1.19 6.29 -52.49 -0.33 0.86 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -34.94 351.73 -8.41 -43.35 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.42 Total: 3.65 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.03 Total: -5.81 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.67 Total: -55.00 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.07 Total: -8.93 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.94 -8.41 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.714 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds