Wall clock time and date at job start Tue Mar 31 2020 07:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99774 * 2 1 4 4 C 1.39895 * 120.00190 * 180.02562 * 2 1 3 5 5 C 1.38889 * 120.00358 * 174.22823 * 4 2 1 6 6 C 1.38059 * 119.99460 * 179.79146 * 5 4 2 7 7 C 1.38853 * 120.00266 * 0.46117 * 6 5 4 8 8 N 1.40155 * 119.99727 * 179.76737 * 7 6 5 9 9 C 1.34778 * 120.00211 * 215.15362 * 8 7 6 10 10 O 1.21297 * 119.99901 * 355.54390 * 9 8 7 11 11 C 1.50695 * 119.99949 * 175.54456 * 9 8 7 12 12 C 1.53002 * 109.46966 * 180.02562 * 11 9 8 13 13 N 1.46904 * 109.47007 * 179.97438 * 12 11 9 14 14 C 1.46897 * 111.00180 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47183 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00276 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99815 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00209 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00288 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47440 * 89.99770 * 19 17 15 21 21 H 1.48497 * 109.47639 * 210.00176 * 19 17 15 22 22 H 1.48506 * 109.46988 * 329.99832 * 19 17 15 23 23 C 1.38851 * 120.00925 * 359.79178 * 7 6 5 24 24 C 1.38055 * 120.00731 * 359.97438 * 23 7 6 25 25 H 1.09003 * 109.46556 * 269.99776 * 1 2 3 26 26 H 1.09004 * 109.47063 * 29.99883 * 1 2 3 27 27 H 1.08999 * 109.46699 * 149.99976 * 1 2 3 28 28 H 1.09003 * 109.46731 * 185.02781 * 3 2 1 29 29 H 1.08998 * 109.47187 * 305.02322 * 3 2 1 30 30 H 1.08997 * 109.47048 * 65.02923 * 3 2 1 31 31 H 1.07997 * 120.00236 * 0.02562 * 5 4 2 32 32 H 1.08004 * 120.00074 * 180.23283 * 6 5 4 33 33 H 0.97002 * 119.99646 * 35.15319 * 8 7 6 34 34 H 1.09003 * 109.47134 * 299.99929 * 11 9 8 35 35 H 1.09001 * 109.47531 * 59.99518 * 11 9 8 36 36 H 1.08995 * 109.46830 * 299.99347 * 12 11 9 37 37 H 1.09001 * 109.47004 * 60.00297 * 12 11 9 38 38 H 1.00906 * 110.99927 * 56.04389 * 13 12 11 39 39 H 1.09002 * 109.46871 * 300.00161 * 14 13 12 40 40 H 1.08996 * 109.47145 * 59.99930 * 14 13 12 41 41 H 0.96996 * 120.00451 * 180.02562 * 18 17 15 42 42 H 1.08003 * 119.99993 * 179.97438 * 23 7 6 43 43 H 1.07997 * 120.01133 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1645 -1.2115 -0.0005 5 6 3.5481 -1.2145 -0.1215 6 6 4.2387 -2.4100 -0.1177 7 6 3.5492 -3.6097 -0.0026 8 7 4.2499 -4.8236 -0.0036 9 6 3.7080 -5.9141 -0.5813 10 8 2.5815 -5.8669 -1.0285 11 6 4.5017 -7.1919 -0.6714 12 6 3.6621 -8.2657 -1.3666 13 7 4.4361 -9.5112 -1.4550 14 6 3.6597 -10.5675 -2.1179 15 6 4.4839 -11.8270 -2.1895 16 1 5.4843 -11.8415 -1.7829 17 6 3.9609 -12.9608 -2.7742 18 7 4.6800 -14.0602 -2.8363 19 14 2.2303 -12.9360 -3.4768 20 1 2.2808 -12.5250 -4.9029 21 1 1.6344 -14.2923 -3.3734 22 1 1.3996 -11.9709 -2.7127 23 6 2.1655 -3.6072 0.1131 24 6 1.4750 -2.4117 0.1142 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 3.2657 1.0715 -0.0901 29 1 1.8684 1.8783 -0.8416 30 1 2.0034 1.8003 0.9316 31 1 4.0841 -0.2816 -0.2147 32 1 5.3149 -2.4123 -0.2080 33 1 5.1249 -4.8787 0.4114 34 1 5.4115 -7.0148 -1.2449 35 1 4.7642 -7.5282 0.3316 36 1 2.7522 -8.4429 -0.7934 37 1 3.4002 -7.9291 -2.3697 38 1 4.7465 -9.8096 -0.5425 39 1 2.7500 -10.7608 -1.5494 40 1 3.3968 -10.2470 -3.1260 41 1 4.3122 -14.8577 -3.2479 42 1 1.6293 -4.5404 0.2022 43 1 0.3987 -2.4096 0.2037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819269802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:00 Heat of formation + Delta-G solvation = -17.147561 kcal Electronic energy + Delta-G solvation = -21841.890766 eV Core-core repulsion = 18500.283982 eV Total energy + Delta-G solvation = -3341.606784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.51121 -40.05793 -37.64655 -37.08242 -35.07335 -34.71809 -32.34665 -32.10708 -30.03686 -29.00446 -28.48032 -25.69128 -24.11281 -23.56852 -22.98318 -21.85409 -21.12477 -19.01545 -18.84519 -18.07537 -17.63803 -17.19387 -16.65331 -16.31728 -15.97978 -15.83811 -15.56875 -15.46200 -14.75941 -14.68887 -14.57915 -14.35695 -14.07011 -13.95018 -13.56139 -13.45842 -13.35251 -12.95358 -12.87570 -12.82587 -12.60067 -12.35818 -12.08861 -11.95459 -11.85999 -11.50419 -11.47088 -10.82041 -10.81601 -10.01369 -9.86664 -9.21342 -8.31425 -7.97753 -6.35446 0.47878 0.51670 1.34461 1.34808 1.46405 1.62827 2.09617 2.29269 2.32708 2.94239 3.02382 3.47607 3.81507 3.91296 4.00014 4.10115 4.21894 4.28401 4.43505 4.50257 4.52638 4.58631 4.61509 4.69346 4.76184 4.78785 4.88225 4.92484 4.94517 4.98113 5.06517 5.11781 5.17990 5.30000 5.50108 5.50803 5.59923 5.90272 5.96953 6.36914 6.48591 6.54060 6.55463 6.63722 6.75596 7.22109 7.29535 8.84763 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.037316 B = 0.002235 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.163165 B =12523.795184 C =13122.892776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.647 5.647 3 C 0.085 3.915 4 C 0.193 3.807 5 C -0.185 4.185 6 C -0.088 4.088 7 C 0.066 3.934 8 N -0.656 5.656 9 C 0.515 3.485 10 O -0.569 6.569 11 C -0.122 4.122 12 C 0.074 3.926 13 N -0.683 5.683 14 C 0.172 3.828 15 C -0.527 4.527 16 H 0.045 0.955 17 C 0.011 3.989 18 N -0.943 5.943 19 Si 0.946 3.054 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.257 1.257 23 C -0.092 4.092 24 C -0.194 4.194 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.427 0.573 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.018 0.982 37 H 0.056 0.944 38 H 0.342 0.658 39 H -0.016 1.016 40 H 0.020 0.980 41 H 0.268 0.732 42 H 0.113 0.887 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.698 34.639 9.407 36.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.359 5.359 3 C -0.057 4.057 4 C 0.091 3.909 5 C -0.207 4.207 6 C -0.109 4.109 7 C -0.029 4.029 8 N -0.303 5.303 9 C 0.303 3.697 10 O -0.447 6.447 11 C -0.162 4.162 12 C -0.056 4.056 13 N -0.314 5.314 14 C 0.044 3.956 15 C -0.565 4.565 16 H 0.063 0.937 17 C -0.187 4.187 18 N -0.583 5.583 19 Si 0.770 3.230 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.181 1.181 23 C -0.113 4.113 24 C -0.217 4.217 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.266 0.734 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.160 0.840 39 H 0.002 0.998 40 H 0.038 0.962 41 H 0.077 0.923 42 H 0.131 0.869 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.243 34.821 8.443 36.081 hybrid contribution -1.055 -0.971 0.409 1.491 sum -5.298 33.851 8.852 35.388 Atomic orbital electron populations 1.21699 0.78918 1.03144 1.01535 1.46563 1.05635 1.03175 1.80543 1.21850 0.97946 0.84016 1.01861 1.18032 0.91909 0.86055 0.94887 1.20820 0.91938 0.99023 1.08962 1.20946 1.00937 0.89889 0.99102 1.17752 0.91515 0.85984 1.07635 1.43310 1.22537 1.07538 1.56932 1.21117 0.86751 0.85808 0.75993 1.90689 1.20830 1.84636 1.48571 1.21508 0.99681 0.90141 1.04827 1.21596 0.94187 0.89945 0.99883 1.60372 1.41008 1.03916 1.26059 1.19753 0.91984 0.89700 0.94209 1.21308 1.01590 0.95079 1.38514 0.93670 1.25813 1.02075 0.94855 0.96000 1.70028 1.39414 1.02725 1.46182 0.85729 0.79812 0.77943 0.79540 1.19138 1.20270 1.18104 1.21019 0.93785 0.98070 0.98381 1.20668 1.00119 0.90861 1.10085 0.93075 0.89851 0.92085 0.89696 0.91641 0.92165 0.83041 0.82913 0.73445 0.85937 0.86013 0.96354 0.92548 0.83987 0.99795 0.96211 0.92272 0.86881 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 10.11 127.77 1.29 2.30 16 2 N -0.65 -9.23 3.41 -747.08 -2.55 -11.78 16 3 C 0.09 0.70 10.63 127.77 1.36 2.06 16 4 C 0.19 3.63 6.54 38.17 0.25 3.88 16 5 C -0.19 -2.95 9.31 22.38 0.21 -2.74 16 6 C -0.09 -1.47 9.96 22.37 0.22 -1.24 16 7 C 0.07 1.46 6.30 38.10 0.24 1.70 16 8 N -0.66 -12.77 5.34 -303.35 -1.62 -14.39 16 9 C 0.51 13.47 7.67 87.66 0.67 14.14 16 10 O -0.57 -20.03 13.43 -3.08 -0.04 -20.07 16 11 C -0.12 -2.89 5.96 29.85 0.18 -2.71 16 12 C 0.07 2.55 4.97 86.30 0.43 2.98 16 13 N -0.68 -27.95 6.49 -517.94 -3.36 -31.32 16 14 C 0.17 8.60 4.51 85.56 0.39 8.98 16 15 C -0.53 -31.03 9.87 25.60 0.25 -30.78 16 16 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 17 C 0.01 0.63 5.47 84.66 0.46 1.09 16 18 N -0.94 -59.37 13.96 21.45 0.30 -59.07 16 19 Si 0.95 45.54 27.47 68.60 1.88 47.42 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.26 -11.87 6.54 99.48 0.65 -11.21 16 23 C -0.09 -2.39 8.69 22.37 0.19 -2.19 16 24 C -0.19 -4.35 9.16 22.38 0.21 -4.15 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 26 H 0.08 0.61 8.07 -2.39 -0.02 0.59 16 27 H 0.06 0.78 6.44 -2.39 -0.02 0.76 16 28 H 0.08 0.56 5.31 -2.39 -0.01 0.54 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.15 1.56 5.74 -2.91 -0.02 1.54 16 32 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.43 4.88 8.82 -92.71 -0.82 4.06 16 34 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.02 0.67 8.10 -2.39 -0.02 0.65 16 37 H 0.06 2.13 8.10 -2.39 -0.02 2.11 16 38 H 0.34 13.04 8.72 -89.69 -0.78 12.26 16 39 H -0.02 -0.78 7.20 -2.39 -0.02 -0.80 16 40 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 41 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 42 H 0.11 3.47 6.23 -2.91 -0.02 3.45 16 43 H 0.13 2.56 6.29 -2.91 -0.02 2.54 16 Total: -1.00 -77.24 351.73 0.33 -76.90 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.62 Total: 18.98 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 6.35 Total: -6.68 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -7.23 Total: -116.56 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.04 Total: -20.07 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Total: -77.24 0.33 -76.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.756 kcal (2) G-P(sol) polarization free energy of solvation -77.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds