Wall clock time and date at job start Tue Mar 31 2020 07:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99759 * 2 1 4 4 C 1.39008 * 119.99964 * 179.97438 * 2 1 3 5 5 C 1.39131 * 119.70758 * 5.25374 * 4 2 1 6 6 C 1.38299 * 119.09479 * 180.24513 * 5 4 2 7 7 C 1.50702 * 120.74285 * 179.78021 * 6 5 4 8 8 N 1.46897 * 109.47386 * 269.72217 * 7 6 5 9 9 C 1.48538 * 111.00123 * 287.40169 * 8 7 6 10 10 C 1.54933 * 103.22579 * 200.28130 * 9 8 7 11 11 C 1.54593 * 102.92591 * 37.41127 * 10 9 8 12 12 O 1.42904 * 110.31066 * 96.95983 * 11 10 9 13 13 C 1.50700 * 110.31084 * 219.12964 * 11 10 9 14 14 H 1.08000 * 120.00330 * 115.71577 * 13 11 10 15 15 C 1.37886 * 119.99791 * 295.71403 * 13 11 10 16 16 N 1.31511 * 120.00026 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99683 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47046 * 90.00259 * 17 15 13 19 19 H 1.48506 * 109.46937 * 210.00231 * 17 15 13 20 20 H 1.48499 * 109.47276 * 329.99845 * 17 15 13 21 21 C 1.47899 * 111.00068 * 170.00327 * 8 7 6 22 22 C 1.38878 * 118.50434 * 359.51402 * 6 5 4 23 23 C 1.38020 * 119.33235 * 0.24408 * 22 6 5 24 24 N 1.31969 * 120.85387 * 0.02562 * 23 22 6 25 25 H 1.09004 * 109.47407 * 270.00415 * 1 2 3 26 26 H 1.08999 * 109.47249 * 30.00619 * 1 2 3 27 27 H 1.09006 * 109.46744 * 150.00767 * 1 2 3 28 28 H 1.09006 * 109.46348 * 239.99932 * 3 2 1 29 29 H 1.08998 * 109.47064 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47338 * 119.99835 * 3 2 1 31 31 H 1.08006 * 120.45355 * 0.02562 * 5 4 2 32 32 H 1.09008 * 109.46874 * 149.72098 * 7 6 5 33 33 H 1.09000 * 109.47335 * 29.72615 * 7 6 5 34 34 H 1.09007 * 110.66246 * 318.71191 * 9 8 7 35 35 H 1.08993 * 110.66698 * 81.83885 * 9 8 7 36 36 H 1.09007 * 110.72333 * 279.05054 * 10 9 8 37 37 H 1.09004 * 110.72411 * 155.77248 * 10 9 8 38 38 H 0.96700 * 113.99325 * 64.28344 * 12 11 10 39 39 H 0.96995 * 119.99911 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.91646 * 26.49394 * 21 8 7 41 41 H 1.08998 * 109.92144 * 265.19786 * 21 8 7 42 42 H 1.08004 * 120.33386 * 180.27026 * 22 6 5 43 43 H 1.08003 * 119.56935 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1601 -1.2039 0.0005 5 6 1.4626 -2.4027 -0.1096 6 6 2.1664 -3.5932 -0.1025 7 6 1.4483 -4.9133 -0.2147 8 7 1.1104 -5.4027 1.1286 9 6 2.3229 -5.8791 1.8422 10 6 1.7457 -6.8033 2.9437 11 6 0.5636 -7.4970 2.2286 12 8 0.9627 -8.7794 1.7405 13 6 -0.6074 -7.6346 3.1672 14 1 -1.5303 -7.1135 2.9593 15 6 -0.5006 -8.4258 4.2914 16 7 0.6233 -9.0599 4.5448 17 14 -1.9519 -8.5958 5.4551 18 1 -2.7944 -9.7429 5.0314 19 1 -1.4551 -8.8294 6.8350 20 1 -2.7597 -7.3501 5.4242 21 6 0.2018 -6.5674 1.0554 22 6 3.5502 -3.5444 0.0045 23 6 4.1778 -2.3193 0.1051 24 7 3.4802 -1.1991 0.1012 25 1 -0.3634 0.0001 1.0277 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 2.8241 1.3264 -0.8901 29 1 1.4891 2.0972 -0.0005 30 1 2.8241 1.3266 0.8900 31 1 0.3860 -2.4038 -0.1958 32 1 2.0935 -5.6368 -0.7133 33 1 0.5344 -4.7818 -0.7940 34 1 2.9698 -6.4412 1.1684 35 1 2.8620 -5.0421 2.2857 36 1 1.3930 -6.2177 3.7927 37 1 2.4882 -7.5357 3.2607 38 1 1.2025 -9.4075 2.4356 39 1 0.6983 -9.6168 5.3354 40 1 0.3441 -7.0905 0.1097 41 1 -0.8329 -6.2376 1.1484 42 1 4.1295 -4.4560 0.0086 43 1 5.2538 -2.2770 0.1890 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829991816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:43 Heat of formation + Delta-G solvation = 8.024572 kcal Electronic energy + Delta-G solvation = -23457.842337 eV Core-core repulsion = 20117.327099 eV Total energy + Delta-G solvation = -3340.515238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.25033 -38.36533 -36.56974 -35.03750 -32.77740 -32.06071 -30.34323 -29.63734 -28.30167 -27.96874 -25.84172 -25.07706 -23.87683 -22.53743 -20.79434 -20.10345 -19.38295 -17.16085 -16.98409 -16.56223 -15.57421 -15.40375 -15.16835 -14.91094 -14.66465 -14.37792 -14.07988 -13.91547 -13.45249 -13.18760 -12.74837 -12.73211 -12.36307 -12.29655 -12.14033 -11.93695 -11.68682 -11.41487 -11.24361 -11.02454 -10.90301 -10.56479 -10.45127 -10.30664 -9.95563 -9.88626 -9.37622 -9.29599 -9.12981 -8.57156 -8.09429 -7.81260 -7.50566 -6.18762 -4.24706 1.45015 1.58930 2.91359 3.24830 3.31806 3.35711 4.01782 4.33389 4.55962 4.69109 4.83490 5.00048 5.09004 5.13280 5.18908 5.26006 5.35809 5.41035 5.54762 5.57655 5.62029 5.70114 5.77511 5.80033 5.98098 6.06258 6.06673 6.14460 6.25913 6.42249 6.51151 6.60774 6.72762 6.90447 6.93440 7.07553 7.29474 7.39931 7.52787 7.65388 7.69167 7.85792 8.16985 8.26209 8.76702 9.42224 9.53774 10.88991 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022278 B = 0.003666 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.536822 B = 7634.939903 C = 8243.497665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.624 5.624 3 C 0.110 3.890 4 C 0.396 3.604 5 C -0.217 4.217 6 C 0.020 3.980 7 C 0.080 3.920 8 N -0.507 5.507 9 C 0.033 3.967 10 C -0.118 4.118 11 C 0.244 3.756 12 O -0.595 6.595 13 C -0.528 4.528 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.900 3.100 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.054 3.946 22 C -0.223 4.223 23 C 0.141 3.859 24 N -0.547 5.547 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.131 0.869 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.384 0.616 39 H 0.267 0.733 40 H 0.037 0.963 41 H 0.079 0.921 42 H 0.127 0.873 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.425 14.782 -9.113 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.339 5.339 3 C -0.033 4.033 4 C 0.162 3.838 5 C -0.242 4.242 6 C 0.011 3.989 7 C -0.048 4.048 8 N -0.231 5.231 9 C -0.094 4.094 10 C -0.157 4.157 11 C 0.204 3.796 12 O -0.405 6.405 13 C -0.566 4.566 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.073 4.073 22 C -0.246 4.246 23 C -0.016 4.016 24 N -0.265 5.265 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.235 0.765 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.098 0.902 42 H 0.145 0.855 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.453 16.335 -9.224 19.075 hybrid contribution -0.627 -1.809 0.829 2.086 sum 2.826 14.527 -8.395 17.014 Atomic orbital electron populations 1.21717 0.78520 1.02793 1.01673 1.46113 1.04962 1.02994 1.79864 1.21423 0.96231 0.83878 1.01788 1.18258 0.88445 0.85625 0.91458 1.21268 1.00862 0.91050 1.11050 1.19941 0.93172 0.94625 0.91145 1.21236 0.98846 0.92231 0.92512 1.64821 1.12791 1.32076 1.13419 1.23332 0.91704 0.97569 0.96801 1.22985 0.98795 0.97334 0.96572 1.19336 0.91245 0.80706 0.88347 1.86078 1.89390 1.25396 1.39676 1.21700 0.99243 1.28721 1.06969 0.91976 1.25014 0.96067 0.94907 0.97383 1.69615 1.25070 1.31101 1.28238 0.86462 0.82390 0.78566 0.79808 1.20562 1.21147 1.19771 1.22873 0.96652 0.89334 0.98422 1.21753 0.94769 0.99243 1.08871 1.22263 0.99233 0.86882 0.93174 1.67106 1.06242 1.31985 1.21169 0.92959 0.91340 0.90959 0.92957 0.91622 0.92627 0.85091 0.93615 0.90216 0.94788 0.91706 0.91483 0.91706 0.76468 0.92351 0.94497 0.90230 0.85509 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.86 10.25 59.85 0.61 1.47 16 2 N -0.62 -7.37 3.39 -189.66 -0.64 -8.01 16 3 C 0.11 1.06 10.19 59.85 0.61 1.67 16 4 C 0.40 5.68 7.37 -155.02 -1.14 4.54 16 5 C -0.22 -3.14 8.97 -39.23 -0.35 -3.49 16 6 C 0.02 0.29 5.18 -104.36 -0.54 -0.25 16 7 C 0.08 1.27 4.90 -4.98 -0.02 1.25 16 8 N -0.51 -9.81 5.23 -231.89 -1.21 -11.02 16 9 C 0.03 0.66 5.70 -1.90 -0.01 0.65 16 10 C -0.12 -2.77 5.49 -24.87 -0.14 -2.90 16 11 C 0.24 6.07 0.99 -90.41 -0.09 5.98 16 12 O -0.60 -15.54 12.93 -35.23 -0.46 -16.00 16 13 C -0.53 -14.23 8.10 -34.44 -0.28 -14.51 16 14 H 0.06 1.67 7.34 -52.49 -0.39 1.28 16 15 C 0.07 1.80 5.26 -17.82 -0.09 1.71 16 16 N -0.90 -24.13 10.88 55.43 0.60 -23.53 16 17 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 C 0.05 1.18 6.13 -2.75 -0.02 1.16 16 22 C -0.22 -3.11 9.01 -39.42 -0.36 -3.47 16 23 C 0.14 1.88 11.17 -17.57 -0.20 1.68 16 24 N -0.55 -8.05 9.57 -12.44 -0.12 -8.16 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.45 7.92 -51.93 -0.41 0.03 16 27 H 0.07 0.63 5.97 -51.93 -0.31 0.32 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.45 7.79 -51.93 -0.40 0.05 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.13 1.72 6.02 -52.48 -0.32 1.41 16 32 H 0.05 0.72 7.79 -51.92 -0.40 0.31 16 33 H 0.08 1.16 8.04 -51.93 -0.42 0.75 16 34 H 0.03 0.65 7.81 -51.93 -0.41 0.25 16 35 H 0.06 1.23 7.87 -51.93 -0.41 0.82 16 36 H 0.07 1.68 7.86 -51.92 -0.41 1.27 16 37 H 0.06 1.57 8.05 -51.93 -0.42 1.15 16 38 H 0.38 10.20 7.05 45.56 0.32 10.52 16 39 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.04 0.78 7.59 -51.93 -0.39 0.39 16 41 H 0.08 1.73 7.39 -51.93 -0.38 1.34 16 42 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 43 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -29.64 344.95 -9.66 -39.30 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.00 Total: 10.94 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.01 Total: -4.51 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -1.37 Total: -50.72 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.46 Total: -16.00 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.64 -9.66 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829991816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.325 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds