Wall clock time and date at job start Tue Mar 31 2020 07:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99759 * 2 1 4 4 C 1.39008 * 119.99964 * 179.97438 * 2 1 3 5 5 C 1.39131 * 119.70758 * 5.25374 * 4 2 1 6 6 C 1.38299 * 119.09479 * 180.24513 * 5 4 2 7 7 C 1.50702 * 120.74285 * 179.78021 * 6 5 4 8 8 N 1.46897 * 109.47386 * 269.72217 * 7 6 5 9 9 C 1.48538 * 111.00123 * 287.40169 * 8 7 6 10 10 C 1.54933 * 103.22579 * 200.28130 * 9 8 7 11 11 C 1.54593 * 102.92591 * 37.41127 * 10 9 8 12 12 O 1.42904 * 110.31066 * 96.95983 * 11 10 9 13 13 C 1.50700 * 110.31084 * 219.12964 * 11 10 9 14 14 H 1.08000 * 120.00330 * 115.71577 * 13 11 10 15 15 C 1.37886 * 119.99791 * 295.71403 * 13 11 10 16 16 N 1.31511 * 120.00026 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99683 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47046 * 90.00259 * 17 15 13 19 19 H 1.48506 * 109.46937 * 210.00231 * 17 15 13 20 20 H 1.48499 * 109.47276 * 329.99845 * 17 15 13 21 21 C 1.47899 * 111.00068 * 170.00327 * 8 7 6 22 22 C 1.38878 * 118.50434 * 359.51402 * 6 5 4 23 23 C 1.38020 * 119.33235 * 0.24408 * 22 6 5 24 24 N 1.31969 * 120.85387 * 0.02562 * 23 22 6 25 25 H 1.09004 * 109.47407 * 270.00415 * 1 2 3 26 26 H 1.08999 * 109.47249 * 30.00619 * 1 2 3 27 27 H 1.09006 * 109.46744 * 150.00767 * 1 2 3 28 28 H 1.09006 * 109.46348 * 239.99932 * 3 2 1 29 29 H 1.08998 * 109.47064 * 359.97438 * 3 2 1 30 30 H 1.08997 * 109.47338 * 119.99835 * 3 2 1 31 31 H 1.08006 * 120.45355 * 0.02562 * 5 4 2 32 32 H 1.09008 * 109.46874 * 149.72098 * 7 6 5 33 33 H 1.09000 * 109.47335 * 29.72615 * 7 6 5 34 34 H 1.09007 * 110.66246 * 318.71191 * 9 8 7 35 35 H 1.08993 * 110.66698 * 81.83885 * 9 8 7 36 36 H 1.09007 * 110.72333 * 279.05054 * 10 9 8 37 37 H 1.09004 * 110.72411 * 155.77248 * 10 9 8 38 38 H 0.96700 * 113.99325 * 64.28344 * 12 11 10 39 39 H 0.96995 * 119.99911 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.91646 * 26.49394 * 21 8 7 41 41 H 1.08998 * 109.92144 * 265.19786 * 21 8 7 42 42 H 1.08004 * 120.33386 * 180.27026 * 22 6 5 43 43 H 1.08003 * 119.56935 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1601 -1.2039 0.0005 5 6 1.4626 -2.4027 -0.1096 6 6 2.1664 -3.5932 -0.1025 7 6 1.4483 -4.9133 -0.2147 8 7 1.1104 -5.4027 1.1286 9 6 2.3229 -5.8791 1.8422 10 6 1.7457 -6.8033 2.9437 11 6 0.5636 -7.4970 2.2286 12 8 0.9627 -8.7794 1.7405 13 6 -0.6074 -7.6346 3.1672 14 1 -1.5303 -7.1135 2.9593 15 6 -0.5006 -8.4258 4.2914 16 7 0.6233 -9.0599 4.5448 17 14 -1.9519 -8.5958 5.4551 18 1 -2.7944 -9.7429 5.0314 19 1 -1.4551 -8.8294 6.8350 20 1 -2.7597 -7.3501 5.4242 21 6 0.2018 -6.5674 1.0554 22 6 3.5502 -3.5444 0.0045 23 6 4.1778 -2.3193 0.1051 24 7 3.4802 -1.1991 0.1012 25 1 -0.3634 0.0001 1.0277 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 2.8241 1.3264 -0.8901 29 1 1.4891 2.0972 -0.0005 30 1 2.8241 1.3266 0.8900 31 1 0.3860 -2.4038 -0.1958 32 1 2.0935 -5.6368 -0.7133 33 1 0.5344 -4.7818 -0.7940 34 1 2.9698 -6.4412 1.1684 35 1 2.8620 -5.0421 2.2857 36 1 1.3930 -6.2177 3.7927 37 1 2.4882 -7.5357 3.2607 38 1 1.2025 -9.4075 2.4356 39 1 0.6983 -9.6168 5.3354 40 1 0.3441 -7.0905 0.1097 41 1 -0.8329 -6.2376 1.1484 42 1 4.1295 -4.4560 0.0086 43 1 5.2538 -2.2770 0.1890 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829991816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:42 Heat of formation + Delta-G solvation = -11.950579 kcal Electronic energy + Delta-G solvation = -23458.708525 eV Core-core repulsion = 20117.327099 eV Total energy + Delta-G solvation = -3341.381425 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31484 -40.01852 -37.58442 -36.67094 -34.12826 -34.10341 -31.34494 -31.16862 -29.82368 -29.09004 -27.31937 -26.20443 -25.45332 -23.62617 -22.15810 -21.38806 -21.25545 -19.11864 -18.06577 -17.59753 -16.95088 -16.85969 -16.55597 -16.21820 -16.11540 -15.76045 -15.42929 -15.18567 -14.80691 -14.43923 -14.08872 -14.00613 -13.69605 -13.44688 -13.39393 -13.15409 -13.05943 -12.94299 -12.76898 -12.62555 -12.45981 -12.30223 -12.18680 -12.02678 -11.90250 -11.09230 -10.86120 -10.61447 -10.47490 -10.33957 -10.08933 -9.35249 -8.44365 -8.20984 -6.34359 0.38739 0.51402 1.41166 1.42985 1.52645 2.07463 2.39931 2.86888 3.04796 3.30018 3.58662 3.81340 3.91813 4.01495 4.16281 4.29958 4.33366 4.34599 4.38199 4.46930 4.48951 4.55068 4.58319 4.67108 4.71857 4.80732 4.81894 4.88400 4.96854 4.97738 5.06353 5.10206 5.24606 5.40139 5.55219 5.60426 5.69977 5.77464 5.96582 6.07658 6.13692 6.19423 6.43878 6.70051 7.24659 7.35624 7.45610 8.85103 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022278 B = 0.003666 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.536822 B = 7634.939903 C = 8243.497665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.628 5.628 3 C 0.109 3.891 4 C 0.383 3.617 5 C -0.227 4.227 6 C 0.007 3.993 7 C 0.084 3.916 8 N -0.511 5.511 9 C 0.048 3.952 10 C -0.111 4.111 11 C 0.227 3.773 12 O -0.601 6.601 13 C -0.554 4.554 14 H 0.055 0.945 15 C 0.027 3.973 16 N -0.915 5.915 17 Si 0.959 3.041 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.272 1.272 21 C 0.063 3.937 22 C -0.231 4.231 23 C 0.140 3.860 24 N -0.563 5.563 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.044 0.956 31 H 0.139 0.861 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.378 0.622 39 H 0.269 0.731 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.137 0.863 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.202 16.159 -9.606 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.342 5.342 3 C -0.034 4.034 4 C 0.148 3.852 5 C -0.252 4.252 6 C -0.001 4.001 7 C -0.044 4.044 8 N -0.235 5.235 9 C -0.079 4.079 10 C -0.150 4.150 11 C 0.188 3.812 12 O -0.411 6.411 13 C -0.592 4.592 14 H 0.073 0.927 15 C -0.173 4.173 16 N -0.556 5.556 17 Si 0.785 3.215 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.196 1.196 21 C -0.064 4.064 22 C -0.255 4.255 23 C -0.017 4.017 24 N -0.282 5.282 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.157 0.843 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.228 0.772 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.155 0.845 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.219 17.741 -9.732 20.490 hybrid contribution -0.544 -2.181 0.967 2.447 sum 2.675 15.560 -8.765 18.058 Atomic orbital electron populations 1.21899 0.77021 1.04205 1.02020 1.46447 1.06090 1.02834 1.78871 1.21522 0.96855 0.83963 1.01038 1.18555 0.88636 0.86636 0.91339 1.21389 1.01366 0.91098 1.11362 1.19923 0.93733 0.94203 0.92288 1.21256 0.99801 0.92747 0.90595 1.64774 1.12294 1.30646 1.15792 1.23170 0.91843 0.97168 0.95731 1.22767 0.98106 0.97274 0.96858 1.19591 0.91253 0.80713 0.89671 1.86071 1.89441 1.25973 1.39590 1.21975 0.99795 1.29368 1.08085 0.92664 1.25700 0.98403 0.94580 0.98637 1.69696 1.26239 1.31102 1.28529 0.85536 0.79536 0.78450 0.77963 1.20134 1.20676 1.19624 1.22690 0.97063 0.89516 0.97177 1.21899 0.94504 0.99979 1.09072 1.22731 1.00538 0.86374 0.92019 1.67193 1.06587 1.32609 1.21794 0.93069 0.88536 0.91003 0.93291 0.88593 0.93750 0.84317 0.93068 0.88954 0.93899 0.90551 0.93808 0.93239 0.77153 0.92179 0.94155 0.90595 0.84549 0.80437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 10.25 127.77 1.31 2.74 16 2 N -0.63 -13.73 3.39 -753.95 -2.56 -16.29 16 3 C 0.11 1.89 10.19 127.77 1.30 3.19 16 4 C 0.38 10.48 7.37 133.06 0.98 11.47 16 5 C -0.23 -6.26 8.97 22.50 0.20 -6.06 16 6 C 0.01 0.20 5.18 -19.70 -0.10 0.09 16 7 C 0.08 2.53 4.90 85.56 0.42 2.95 16 8 N -0.51 -19.25 5.23 -887.56 -4.65 -23.90 16 9 C 0.05 1.87 5.70 86.65 0.49 2.37 16 10 C -0.11 -5.27 5.49 31.80 0.17 -5.09 16 11 C 0.23 11.42 0.99 -10.66 -0.01 11.41 16 12 O -0.60 -31.73 12.93 -148.98 -1.93 -33.65 16 13 C -0.55 -30.18 8.10 25.60 0.21 -29.98 16 14 H 0.06 3.00 7.34 -2.91 -0.02 2.98 16 15 C 0.03 1.42 5.26 84.66 0.45 1.87 16 16 N -0.92 -49.49 10.88 21.45 0.23 -49.26 16 17 Si 0.96 42.68 29.54 68.60 2.03 44.71 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 C 0.06 2.72 6.13 86.45 0.53 3.25 16 22 C -0.23 -6.07 9.01 22.37 0.20 -5.87 16 23 C 0.14 3.48 11.17 84.62 0.95 4.43 16 24 N -0.56 -15.78 9.57 -193.27 -1.85 -17.63 16 25 H 0.05 0.82 8.14 -2.38 -0.02 0.81 16 26 H 0.10 0.96 7.92 -2.39 -0.02 0.94 16 27 H 0.07 1.14 5.97 -2.38 -0.01 1.12 16 28 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.10 1.05 7.79 -2.39 -0.02 1.03 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.14 3.47 6.02 -2.91 -0.02 3.46 16 32 H 0.05 1.51 7.79 -2.38 -0.02 1.49 16 33 H 0.09 2.54 8.04 -2.39 -0.02 2.52 16 34 H 0.04 1.59 7.81 -2.38 -0.02 1.57 16 35 H 0.08 2.79 7.87 -2.39 -0.02 2.77 16 36 H 0.04 2.23 7.86 -2.38 -0.02 2.21 16 37 H 0.05 2.44 8.05 -2.38 -0.02 2.42 16 38 H 0.38 20.49 7.05 -74.06 -0.52 19.97 16 39 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 40 H 0.04 1.68 7.59 -2.39 -0.02 1.66 16 41 H 0.08 3.29 7.39 -2.39 -0.02 3.27 16 42 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 43 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -62.74 344.95 -1.14 -63.87 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: 0.48 Total: 35.38 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 7.10 Total: -3.24 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -8.82 Total: -107.07 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -1.93 Total: -33.65 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -62.74 -1.14 -63.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829991816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.920 kcal (2) G-P(sol) polarization free energy of solvation -62.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds