Wall clock time and date at job start Tue Mar 31 2020 07:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 119.99570 * 2 1 4 4 C 1.39003 * 120.00261 * 179.97438 * 2 1 3 5 5 C 1.39133 * 119.70147 * 5.25665 * 4 2 1 6 6 C 1.38307 * 119.09450 * 180.24611 * 5 4 2 7 7 C 1.50696 * 120.74601 * 179.77888 * 6 5 4 8 8 N 1.46901 * 109.47023 * 269.71928 * 7 6 5 9 9 C 1.47903 * 110.99945 * 69.87859 * 8 7 6 10 10 C 1.53990 * 107.05830 * 214.15248 * 9 8 7 11 11 C 1.54605 * 105.14002 * 1.22715 * 10 9 8 12 12 O 1.42905 * 110.71993 * 263.41878 * 11 10 9 13 13 C 1.50697 * 110.72395 * 140.31323 * 11 10 9 14 14 H 1.08002 * 120.00393 * 5.10548 * 13 11 10 15 15 C 1.37873 * 120.00035 * 185.10092 * 13 11 10 16 16 N 1.31516 * 120.00668 * 183.21903 * 15 13 11 17 17 Si 1.86805 * 119.99802 * 3.21824 * 15 13 11 18 18 H 1.48502 * 109.47175 * 84.79590 * 17 15 13 19 19 H 1.48497 * 109.47131 * 204.79248 * 17 15 13 20 20 H 1.48494 * 109.47104 * 324.79459 * 17 15 13 21 21 C 1.48530 * 111.00233 * 312.48172 * 8 7 6 22 22 C 1.38880 * 118.49987 * 359.50896 * 6 5 4 23 23 C 1.38016 * 119.33764 * 0.24702 * 22 6 5 24 24 N 1.31979 * 120.85213 * 0.02562 * 23 22 6 25 25 H 1.08995 * 109.47152 * 240.00369 * 1 2 3 26 26 H 1.09001 * 109.47104 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47059 * 120.00195 * 1 2 3 28 28 H 1.09004 * 109.46821 * 269.99574 * 3 2 1 29 29 H 1.08993 * 109.47344 * 29.99507 * 3 2 1 30 30 H 1.08995 * 109.46811 * 149.99887 * 3 2 1 31 31 H 1.08002 * 120.46166 * 0.02562 * 5 4 2 32 32 H 1.09001 * 109.46839 * 149.72175 * 7 6 5 33 33 H 1.08995 * 109.47642 * 29.72434 * 7 6 5 34 34 H 1.09001 * 109.91493 * 333.50575 * 9 8 7 35 35 H 1.09001 * 109.91554 * 94.80246 * 9 8 7 36 36 H 1.09003 * 110.30845 * 120.13540 * 10 9 8 37 37 H 1.08997 * 110.31506 * 242.21210 * 10 9 8 38 38 H 0.96701 * 113.99727 * 298.54262 * 12 11 10 39 39 H 0.96990 * 120.00689 * 180.02562 * 16 15 13 40 40 H 1.09005 * 110.66939 * 278.15479 * 21 8 7 41 41 H 1.09000 * 110.66839 * 41.28184 * 21 8 7 42 42 H 1.08003 * 120.33266 * 180.27367 * 22 6 5 43 43 H 1.07994 * 119.57791 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1601 -1.2038 0.0005 5 6 1.4626 -2.4026 -0.1096 6 6 2.1664 -3.5932 -0.1026 7 6 1.4482 -4.9133 -0.2148 8 7 1.1104 -5.4026 1.1285 9 6 0.0544 -4.5710 1.7455 10 6 0.3438 -4.5215 3.2572 11 6 1.6381 -5.3453 3.4476 12 8 1.3316 -6.6862 3.8354 13 6 2.5415 -4.6923 4.4617 14 1 2.2061 -3.8184 5.0004 15 6 3.7963 -5.2106 4.7021 16 7 4.5603 -4.6796 5.6316 17 14 4.4115 -6.6672 3.7073 18 1 5.0062 -6.1825 2.4358 19 1 5.4407 -7.4001 4.4874 20 1 3.2765 -7.5767 3.4078 21 6 2.2809 -5.3113 2.0383 22 6 3.5502 -3.5444 0.0044 23 6 4.1779 -2.3194 0.1051 24 7 3.4802 -1.1991 0.1012 25 1 -0.3633 -0.5137 0.8900 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 2.3791 1.5834 -1.0277 29 1 1.6084 2.0284 0.5137 30 1 3.1498 1.1385 0.5138 31 1 0.3860 -2.4038 -0.1959 32 1 2.0935 -5.6367 -0.7133 33 1 0.5344 -4.7818 -0.7940 34 1 0.0836 -3.5642 1.3287 35 1 -0.9228 -5.0206 1.5691 36 1 0.5001 -3.4918 3.5789 37 1 -0.4779 -4.9709 3.8147 38 1 0.8592 -6.7541 4.6764 39 1 5.4432 -5.0439 5.8004 40 1 2.9450 -6.1642 1.8977 41 1 2.8172 -4.3752 1.8825 42 1 4.1294 -4.4560 0.0084 43 1 5.2537 -2.2769 0.1889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829991817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:47 Heat of formation + Delta-G solvation = 25.450199 kcal Electronic energy + Delta-G solvation = -24680.012545 eV Core-core repulsion = 21340.252939 eV Total energy + Delta-G solvation = -3339.759606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42741 -38.58319 -36.49791 -35.20588 -32.56740 -32.29769 -30.40967 -29.89298 -28.31980 -28.19921 -26.03854 -24.93418 -24.00591 -22.34637 -21.18034 -19.97778 -19.52839 -17.37582 -16.95966 -16.48207 -15.58296 -15.42830 -15.28457 -15.00823 -14.63414 -14.34467 -14.17918 -13.93581 -13.52182 -13.08499 -12.90406 -12.77021 -12.69073 -12.33857 -12.15285 -12.06460 -11.77588 -11.56443 -11.44547 -11.24441 -11.08657 -10.57650 -10.40704 -10.06829 -9.91372 -9.70404 -9.31814 -9.25542 -8.88014 -8.62711 -8.32063 -7.85651 -7.41922 -6.14188 -4.24634 1.51168 1.66899 2.98628 3.34379 3.46219 3.70146 4.12795 4.48493 4.58800 4.69023 4.88569 4.99746 5.13735 5.19345 5.21971 5.26550 5.39176 5.40502 5.46390 5.54674 5.57959 5.59312 5.62699 5.75859 5.88373 5.90931 5.97210 6.05229 6.14667 6.26958 6.32656 6.54989 6.62589 6.68825 6.77973 6.85968 6.99252 7.13975 7.35611 7.46524 7.52656 7.68244 8.29314 8.36289 8.83247 9.07391 9.50874 10.96639 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017090 B = 0.006016 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.966249 B = 4653.520682 C = 5024.993426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.622 5.622 3 C 0.102 3.898 4 C 0.398 3.602 5 C -0.225 4.225 6 C -0.030 4.030 7 C 0.079 3.921 8 N -0.502 5.502 9 C 0.032 3.968 10 C -0.144 4.144 11 C 0.223 3.777 12 O -0.568 6.568 13 C -0.549 4.549 14 H 0.074 0.926 15 C 0.088 3.912 16 N -0.891 5.891 17 Si 0.870 3.130 18 H -0.284 1.284 19 H -0.301 1.301 20 H -0.224 1.224 21 C 0.036 3.964 22 C -0.214 4.214 23 C 0.148 3.852 24 N -0.542 5.542 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.359 0.641 39 H 0.265 0.735 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.129 0.871 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.448 6.805 -13.204 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.338 5.338 3 C -0.041 4.041 4 C 0.164 3.836 5 C -0.250 4.250 6 C -0.040 4.040 7 C -0.050 4.050 8 N -0.223 5.223 9 C -0.096 4.096 10 C -0.182 4.182 11 C 0.183 3.817 12 O -0.373 6.373 13 C -0.587 4.587 14 H 0.092 0.908 15 C -0.117 4.117 16 N -0.527 5.527 17 Si 0.698 3.302 18 H -0.211 1.211 19 H -0.228 1.228 20 H -0.147 1.147 21 C -0.091 4.091 22 C -0.237 4.237 23 C -0.008 4.008 24 N -0.259 5.259 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.205 0.795 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.147 0.853 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.857 7.063 -13.682 16.855 hybrid contribution 0.121 -0.324 0.202 0.400 sum -6.736 6.739 -13.480 16.507 Atomic orbital electron populations 1.21614 0.78772 1.02528 1.01379 1.46080 1.04827 1.03047 1.79822 1.21533 0.97901 0.83946 1.00742 1.18230 0.88553 0.85567 0.91239 1.21214 1.00241 0.91310 1.12242 1.20784 0.94174 0.96182 0.92862 1.21464 0.99180 0.90616 0.93724 1.65233 1.08447 1.47678 1.00984 1.22913 0.95474 0.95528 0.95645 1.22992 0.99624 1.01523 0.94071 1.19833 0.90434 0.80112 0.91315 1.86534 1.79206 1.29340 1.42255 1.21342 0.99735 1.14864 1.22755 0.90842 1.24970 0.96284 0.96281 0.94139 1.69934 1.10097 1.41481 1.31204 0.87152 0.79122 0.84524 0.79364 1.21061 1.22819 1.14700 1.23828 0.92312 1.01071 0.91839 1.21762 0.94652 0.99473 1.07793 1.22313 0.99471 0.86836 0.92200 1.67090 1.06188 1.31998 1.20661 0.92515 0.90609 0.92789 0.93952 0.92194 0.90232 0.85528 0.89689 0.90188 0.93774 0.91440 0.91553 0.92087 0.79516 0.92518 0.91147 0.90962 0.85315 0.82919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.98 9.41 59.85 0.56 1.54 16 2 N -0.62 -8.21 3.39 -189.67 -0.64 -8.86 16 3 C 0.10 1.15 10.47 59.85 0.63 1.77 16 4 C 0.40 6.39 7.37 -155.03 -1.14 5.25 16 5 C -0.22 -3.46 7.54 -39.22 -0.30 -3.76 16 6 C -0.03 -0.49 3.95 -104.36 -0.41 -0.90 16 7 C 0.08 1.22 5.72 -4.98 -0.03 1.19 16 8 N -0.50 -9.44 5.54 -231.90 -1.28 -10.73 16 9 C 0.03 0.56 6.46 -2.76 -0.02 0.55 16 10 C -0.14 -2.89 6.25 -25.37 -0.16 -3.05 16 11 C 0.22 5.27 0.78 -89.91 -0.07 5.20 16 12 O -0.57 -13.26 10.46 -35.23 -0.37 -13.63 16 13 C -0.55 -15.32 8.82 -34.44 -0.30 -15.62 16 14 H 0.07 2.23 7.84 -52.49 -0.41 1.82 16 15 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 16 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 17 Si 0.87 22.15 23.87 -169.99 -4.06 18.10 16 18 H -0.28 -6.97 7.06 56.52 0.40 -6.57 16 19 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 20 H -0.22 -5.68 5.52 56.52 0.31 -5.37 16 21 C 0.04 0.80 3.92 -1.90 -0.01 0.80 16 22 C -0.21 -3.58 7.64 -39.43 -0.30 -3.88 16 23 C 0.15 2.45 11.17 -17.57 -0.20 2.26 16 24 N -0.54 -9.31 9.08 -12.44 -0.11 -9.42 16 25 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 26 H 0.08 0.55 7.79 -51.93 -0.40 0.14 16 27 H 0.05 0.47 7.72 -51.93 -0.40 0.07 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 30 H 0.08 1.03 7.30 -51.93 -0.38 0.66 16 31 H 0.13 1.69 5.88 -52.49 -0.31 1.38 16 32 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 33 H 0.08 1.05 8.04 -51.93 -0.42 0.64 16 34 H 0.04 0.72 4.94 -51.93 -0.26 0.47 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.39 7.70 -51.93 -0.40 0.99 16 37 H 0.06 1.12 8.08 -51.93 -0.42 0.71 16 38 H 0.36 7.28 9.09 45.56 0.41 7.70 16 39 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.07 1.67 4.81 -51.93 -0.25 1.42 16 41 H 0.07 1.68 4.76 -51.93 -0.25 1.44 16 42 H 0.13 2.08 8.06 -52.48 -0.42 1.65 16 43 H 0.15 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -33.40 329.75 -8.22 -41.62 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -5.65 Total: 10.60 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -1.84 Total: -6.22 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -1.27 Total: -55.44 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.37 Total: -13.63 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.06 Total: 18.10 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.40 -8.22 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829991817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.070 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds