Wall clock time and date at job start Tue Mar 31 2020 07:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35911 * 117.00090 * 2 1 4 4 C 1.38740 * 120.47447 * 359.97438 * 3 2 1 5 5 N 1.31811 * 120.68218 * 180.02562 * 4 3 2 6 6 C 1.31881 * 121.78320 * 359.73212 * 5 4 3 7 7 C 1.38211 * 120.88317 * 0.53722 * 6 5 4 8 8 C 1.50697 * 120.38845 * 179.75438 * 7 6 5 9 9 N 1.46904 * 109.46985 * 269.72153 * 8 7 6 10 10 C 1.46900 * 111.00051 * 179.97438 * 9 8 7 11 11 C 1.53037 * 109.46380 * 275.02789 * 10 9 8 12 12 C 1.53191 * 109.31315 * 178.60196 * 11 10 9 13 13 N 1.46922 * 108.76526 * 54.65514 * 12 11 10 14 14 C 1.36932 * 120.63075 * 126.40587 * 13 12 11 15 15 H 1.08003 * 120.00355 * 331.82556 * 14 13 12 16 16 C 1.38821 * 120.00141 * 151.81886 * 14 13 12 17 17 N 1.31621 * 119.99330 * 343.07835 * 16 14 13 18 18 Si 1.86798 * 120.00147 * 163.07981 * 16 14 13 19 19 H 1.48502 * 109.46840 * 59.99783 * 18 16 14 20 20 H 1.48494 * 109.46973 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46826 * 300.00354 * 18 16 14 22 22 C 1.46922 * 118.73708 * 306.38063 * 13 12 11 23 23 C 1.53042 * 109.45887 * 154.96679 * 10 9 8 24 24 C 1.38578 * 119.22470 * 359.47163 * 7 6 5 25 25 H 1.09003 * 109.47368 * 60.00365 * 1 2 3 26 26 H 1.09004 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47044 * 300.00193 * 1 2 3 28 28 H 1.08001 * 119.66402 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.55885 * 180.26540 * 6 5 4 30 30 H 1.08997 * 109.47281 * 149.72021 * 8 7 6 31 31 H 1.09005 * 109.47069 * 29.71938 * 8 7 6 32 32 H 1.00895 * 110.99954 * 56.04341 * 9 8 7 33 33 H 1.09008 * 109.45881 * 35.00099 * 10 9 8 34 34 H 1.09001 * 109.49278 * 298.56747 * 11 10 9 35 35 H 1.09000 * 109.50070 * 58.65737 * 11 10 9 36 36 H 1.08998 * 109.59747 * 294.86410 * 12 11 10 37 37 H 1.09000 * 109.69800 * 174.50525 * 12 11 10 38 38 H 0.97003 * 119.98887 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.58795 * 293.82504 * 22 13 12 40 40 H 1.09001 * 109.70196 * 173.46987 * 22 13 12 41 41 H 1.08993 * 109.50140 * 301.34245 * 23 10 9 42 42 H 1.09003 * 109.49291 * 61.43746 * 23 10 9 43 43 H 1.07998 * 120.81169 * 180.22939 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3808 -0.0005 5 7 1.8942 3.5574 -0.0010 6 6 3.2080 3.6721 0.0042 7 6 4.0179 2.5522 -0.0007 8 6 5.5180 2.6962 -0.0002 9 7 6.0059 2.7423 -1.3851 10 6 7.4676 2.8833 -1.4239 11 6 7.8403 4.3633 -1.3120 12 6 9.3658 4.5035 -1.3176 13 7 9.8973 3.8364 -2.5139 14 6 10.7229 4.5059 -3.3772 15 1 10.6450 5.5785 -3.4766 16 6 11.6601 3.8059 -4.1247 17 7 11.9928 2.5796 -3.7812 18 14 12.4490 4.6043 -5.6179 19 1 13.1695 5.8334 -5.1992 20 1 13.4085 3.6554 -6.2375 21 1 11.3964 4.9590 -6.6035 22 6 9.5266 2.4373 -2.7660 23 6 7.9993 2.3201 -2.7439 24 6 3.4345 1.2952 0.0000 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2214 2.3269 -0.0005 29 1 3.6570 4.6543 0.0079 30 1 5.9646 1.8454 0.5143 31 1 5.7944 3.6172 0.5132 32 1 5.5576 3.4838 -1.9019 33 1 7.9076 2.3341 -0.5914 34 1 7.4215 4.9088 -2.1577 35 1 7.4412 4.7698 -0.3827 36 1 9.7792 4.0356 -0.4242 37 1 9.6377 5.5589 -1.3365 38 1 12.6475 2.0904 -4.3038 39 1 9.9531 1.8009 -1.9907 40 1 9.9027 2.1274 -3.7410 41 1 7.7134 1.2722 -2.8338 42 1 7.5790 2.8851 -3.5759 43 1 4.0429 0.4029 -0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850126474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:56 Heat of formation + Delta-G solvation = 18.644784 kcal Electronic energy + Delta-G solvation = -22768.658061 eV Core-core repulsion = 19428.603350 eV Total energy + Delta-G solvation = -3340.054711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88403 -38.63740 -37.96771 -35.42379 -33.19186 -31.80614 -30.86307 -29.94966 -28.97433 -27.86079 -25.75181 -24.14992 -23.72830 -22.16532 -21.67294 -21.32005 -19.27160 -18.09944 -17.27913 -16.88946 -16.78807 -16.18837 -15.23186 -15.02523 -14.63341 -14.53271 -13.94749 -13.74478 -13.64480 -13.45269 -13.24958 -12.96527 -12.86038 -12.39193 -12.31422 -12.09995 -11.92300 -11.83214 -11.40411 -11.05405 -10.77308 -10.69732 -10.26490 -10.22623 -9.99253 -9.79582 -9.69196 -9.64830 -9.39992 -8.69679 -8.46943 -8.10399 -6.65372 -5.77056 -3.19491 0.86505 1.10267 2.84884 3.39692 3.45487 3.46892 3.53777 4.22006 4.36580 4.48228 4.51342 4.63300 4.74653 4.76240 4.86510 4.94011 5.07908 5.15871 5.31302 5.43153 5.51176 5.52673 5.60195 5.69875 5.75789 5.87907 6.06099 6.12657 6.26018 6.31555 6.48245 6.58559 6.62882 6.70951 6.85608 6.91702 6.95111 7.28178 7.38819 7.58240 7.70591 7.73099 7.81352 8.47547 9.23595 9.86942 10.43797 11.31513 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035194 B = 0.002703 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.410282 B =10358.173298 C =10649.223957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.075 3.925 4 C 0.011 3.989 5 N -0.451 5.451 6 C 0.066 3.934 7 C -0.085 4.085 8 C 0.099 3.901 9 N -0.682 5.682 10 C 0.095 3.905 11 C -0.160 4.160 12 C 0.149 3.851 13 N -0.592 5.592 14 C -0.253 4.253 15 H 0.064 0.936 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.171 3.829 23 C -0.125 4.125 24 C -0.088 4.088 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.339 0.661 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.052 0.948 38 H 0.254 0.746 39 H 0.017 0.983 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.090 -3.214 9.132 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.224 6.224 3 C 0.028 3.972 4 C -0.147 4.147 5 N -0.159 5.159 6 C -0.092 4.092 7 C -0.088 4.088 8 C -0.031 4.031 9 N -0.312 5.312 10 C -0.014 4.014 11 C -0.201 4.201 12 C 0.022 3.978 13 N -0.315 5.315 14 C -0.383 4.383 15 H 0.081 0.919 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.732 3.268 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.045 3.955 23 C -0.165 4.165 24 C -0.115 4.115 25 H 0.076 0.924 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.157 0.843 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.035 0.965 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.372 -3.477 8.981 23.442 hybrid contribution 0.733 0.643 -0.506 1.098 sum -20.639 -2.834 8.475 22.490 Atomic orbital electron populations 1.23109 0.78099 1.04322 1.01513 1.86093 1.21556 1.26140 1.88612 1.20085 0.93203 0.85665 0.98291 1.22851 1.00382 0.87335 1.04163 1.67523 1.12101 1.26433 1.09858 1.22589 0.88663 0.98709 0.99281 1.20755 0.97284 0.92825 0.97894 1.20855 0.88652 1.01679 0.91865 1.60816 1.06782 1.52551 1.11015 1.21573 0.85027 0.95125 0.99624 1.22700 1.00446 0.96995 0.99980 1.20807 0.90117 0.96749 0.90106 1.44059 1.54454 1.10208 1.22784 1.19133 1.10808 0.91955 1.16398 0.91851 1.25047 0.96826 0.97038 1.00724 1.70026 1.33850 1.11759 1.39085 0.86370 0.78773 0.78420 0.83212 1.20921 1.21624 1.21032 1.20798 0.88031 0.85008 1.01700 1.22183 0.99659 0.99352 0.95271 1.20843 0.91312 0.98751 1.00563 0.92395 0.87923 0.92490 0.82782 0.82713 0.89845 0.93648 0.84342 0.91135 0.92169 0.93558 0.96612 0.92935 0.93582 0.96522 0.89385 0.92706 0.92836 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.13 16 2 O -0.31 -3.08 10.51 -19.46 -0.20 -3.28 16 3 C 0.07 0.81 6.71 -39.07 -0.26 0.55 16 4 C 0.01 0.11 10.22 -17.37 -0.18 -0.06 16 5 N -0.45 -5.46 10.36 -13.13 -0.14 -5.59 16 6 C 0.07 0.75 10.85 -17.54 -0.19 0.56 16 7 C -0.09 -0.96 5.41 -104.51 -0.57 -1.52 16 8 C 0.10 1.13 5.63 -4.98 -0.03 1.11 16 9 N -0.68 -9.35 6.24 -107.94 -0.67 -10.02 16 10 C 0.10 1.56 2.43 -67.67 -0.16 1.39 16 11 C -0.16 -2.68 5.33 -26.61 -0.14 -2.82 16 12 C 0.15 3.10 6.52 -3.71 -0.02 3.07 16 13 N -0.59 -14.81 2.99 -172.32 -0.52 -15.32 16 14 C -0.25 -6.97 9.58 -15.06 -0.14 -7.12 16 15 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 17 N -0.90 -26.29 11.19 55.49 0.62 -25.67 16 18 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 23 C -0.12 -2.40 5.69 -26.61 -0.15 -2.55 16 24 C -0.09 -1.00 9.81 -39.13 -0.38 -1.38 16 25 H 0.06 0.28 7.68 -51.93 -0.40 -0.12 16 26 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.25 7.68 -51.93 -0.40 -0.15 16 28 H 0.16 1.20 6.32 -52.49 -0.33 0.87 16 29 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 31 H 0.05 0.49 7.36 -51.93 -0.38 0.11 16 32 H 0.34 4.55 8.47 -39.29 -0.33 4.22 16 33 H 0.07 1.18 7.80 -51.92 -0.40 0.78 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.66 7.42 -51.93 -0.39 0.28 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 2.36 6.07 -51.93 -0.31 2.05 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 346.32 15.07 5.22 5.22 Total: -1.00 -30.92 346.32 -8.77 -39.69 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -6.71 Total: 1.86 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.35 Total: -3.62 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.70 Total: -56.61 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: -0.20 Total: -3.28 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.92 -8.77 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850126474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.336 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds