Wall clock time and date at job start Tue Mar 31 2020 07:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35911 * 117.00090 * 2 1 4 4 C 1.38740 * 120.47447 * 359.97438 * 3 2 1 5 5 N 1.31811 * 120.68218 * 180.02562 * 4 3 2 6 6 C 1.31881 * 121.78320 * 359.73212 * 5 4 3 7 7 C 1.38211 * 120.88317 * 0.53722 * 6 5 4 8 8 C 1.50697 * 120.38845 * 179.75438 * 7 6 5 9 9 N 1.46904 * 109.46985 * 269.72153 * 8 7 6 10 10 C 1.46900 * 111.00051 * 179.97438 * 9 8 7 11 11 C 1.53037 * 109.46380 * 275.02789 * 10 9 8 12 12 C 1.53191 * 109.31315 * 178.60196 * 11 10 9 13 13 N 1.46922 * 108.76526 * 54.65514 * 12 11 10 14 14 C 1.36932 * 120.63075 * 126.40587 * 13 12 11 15 15 H 1.08003 * 120.00355 * 331.82556 * 14 13 12 16 16 C 1.38821 * 120.00141 * 151.81886 * 14 13 12 17 17 N 1.31621 * 119.99330 * 343.07835 * 16 14 13 18 18 Si 1.86798 * 120.00147 * 163.07981 * 16 14 13 19 19 H 1.48502 * 109.46840 * 59.99783 * 18 16 14 20 20 H 1.48494 * 109.46973 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46826 * 300.00354 * 18 16 14 22 22 C 1.46922 * 118.73708 * 306.38063 * 13 12 11 23 23 C 1.53042 * 109.45887 * 154.96679 * 10 9 8 24 24 C 1.38578 * 119.22470 * 359.47163 * 7 6 5 25 25 H 1.09003 * 109.47368 * 60.00365 * 1 2 3 26 26 H 1.09004 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47044 * 300.00193 * 1 2 3 28 28 H 1.08001 * 119.66402 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.55885 * 180.26540 * 6 5 4 30 30 H 1.08997 * 109.47281 * 149.72021 * 8 7 6 31 31 H 1.09005 * 109.47069 * 29.71938 * 8 7 6 32 32 H 1.00895 * 110.99954 * 56.04341 * 9 8 7 33 33 H 1.09008 * 109.45881 * 35.00099 * 10 9 8 34 34 H 1.09001 * 109.49278 * 298.56747 * 11 10 9 35 35 H 1.09000 * 109.50070 * 58.65737 * 11 10 9 36 36 H 1.08998 * 109.59747 * 294.86410 * 12 11 10 37 37 H 1.09000 * 109.69800 * 174.50525 * 12 11 10 38 38 H 0.97003 * 119.98887 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.58795 * 293.82504 * 22 13 12 40 40 H 1.09001 * 109.70196 * 173.46987 * 22 13 12 41 41 H 1.08993 * 109.50140 * 301.34245 * 23 10 9 42 42 H 1.09003 * 109.49291 * 61.43746 * 23 10 9 43 43 H 1.07998 * 120.81169 * 180.22939 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3808 -0.0005 5 7 1.8942 3.5574 -0.0010 6 6 3.2080 3.6721 0.0042 7 6 4.0179 2.5522 -0.0007 8 6 5.5180 2.6962 -0.0002 9 7 6.0059 2.7423 -1.3851 10 6 7.4676 2.8833 -1.4239 11 6 7.8403 4.3633 -1.3120 12 6 9.3658 4.5035 -1.3176 13 7 9.8973 3.8364 -2.5139 14 6 10.7229 4.5059 -3.3772 15 1 10.6450 5.5785 -3.4766 16 6 11.6601 3.8059 -4.1247 17 7 11.9928 2.5796 -3.7812 18 14 12.4490 4.6043 -5.6179 19 1 13.1695 5.8334 -5.1992 20 1 13.4085 3.6554 -6.2375 21 1 11.3964 4.9590 -6.6035 22 6 9.5266 2.4373 -2.7660 23 6 7.9993 2.3201 -2.7439 24 6 3.4345 1.2952 0.0000 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.2214 2.3269 -0.0005 29 1 3.6570 4.6543 0.0079 30 1 5.9646 1.8454 0.5143 31 1 5.7944 3.6172 0.5132 32 1 5.5576 3.4838 -1.9019 33 1 7.9076 2.3341 -0.5914 34 1 7.4215 4.9088 -2.1577 35 1 7.4412 4.7698 -0.3827 36 1 9.7792 4.0356 -0.4242 37 1 9.6377 5.5589 -1.3365 38 1 12.6475 2.0904 -4.3038 39 1 9.9531 1.8009 -1.9907 40 1 9.9027 2.1274 -3.7410 41 1 7.7134 1.2722 -2.8338 42 1 7.5790 2.8851 -3.5759 43 1 4.0429 0.4029 -0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850126474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:55 Heat of formation + Delta-G solvation = -2.025744 kcal Electronic energy + Delta-G solvation = -22769.554402 eV Core-core repulsion = 19428.603350 eV Total energy + Delta-G solvation = -3340.951052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.65907 -39.73964 -39.07935 -36.83140 -34.58897 -33.20567 -32.00692 -31.49618 -30.42269 -28.44719 -27.11752 -25.65118 -24.55172 -23.76569 -23.01875 -22.45069 -20.86474 -18.96934 -18.61541 -18.04456 -17.63287 -16.93691 -16.81482 -16.32376 -16.03471 -15.43250 -15.28955 -15.16601 -14.97543 -14.69278 -14.47505 -14.08295 -14.04312 -13.82962 -13.39000 -13.07040 -13.06878 -12.86861 -12.68897 -12.54632 -12.48312 -12.40274 -11.99648 -11.93242 -11.77438 -11.41352 -11.22301 -10.53887 -10.52210 -10.44522 -9.48510 -9.23786 -8.67045 -7.86718 -5.31963 0.05397 0.28021 1.46818 1.49485 1.56184 2.22870 2.51985 2.69953 3.25380 3.35554 3.53525 3.66097 3.72725 3.82312 3.98571 4.02009 4.10883 4.18751 4.27340 4.39095 4.42135 4.44525 4.55556 4.69822 4.71162 4.76321 4.78159 4.89468 4.97496 5.01556 5.07244 5.17530 5.27223 5.29174 5.37402 5.49428 5.53959 5.66008 5.75776 6.10410 6.23839 6.40533 6.47541 6.92264 7.16157 7.88002 8.39292 9.19590 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035194 B = 0.002703 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.410282 B =10358.173298 C =10649.223957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.328 6.328 3 C 0.072 3.928 4 C 0.009 3.991 5 N -0.471 5.471 6 C 0.059 3.941 7 C -0.087 4.087 8 C 0.104 3.896 9 N -0.681 5.681 10 C 0.108 3.892 11 C -0.145 4.145 12 C 0.143 3.857 13 N -0.611 5.611 14 C -0.264 4.264 15 H 0.065 0.935 16 C -0.052 4.052 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.279 1.279 22 C 0.178 3.822 23 C -0.111 4.111 24 C -0.102 4.102 25 H 0.066 0.934 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.179 0.821 29 H 0.170 0.830 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.343 0.657 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.014 0.986 37 H 0.052 0.948 38 H 0.250 0.750 39 H -0.004 1.004 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.131 -2.491 9.733 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.024 3.976 4 C -0.149 4.149 5 N -0.180 5.180 6 C -0.099 4.099 7 C -0.089 4.089 8 C -0.025 4.025 9 N -0.311 5.311 10 C -0.001 4.001 11 C -0.186 4.186 12 C 0.017 3.983 13 N -0.335 5.335 14 C -0.394 4.394 15 H 0.083 0.917 16 C -0.247 4.247 17 N -0.581 5.581 18 Si 0.795 3.205 19 H -0.200 1.200 20 H -0.220 1.220 21 H -0.205 1.205 22 C 0.052 3.948 23 C -0.151 4.151 24 C -0.129 4.129 25 H 0.085 0.915 26 H 0.140 0.860 27 H 0.088 0.912 28 H 0.196 0.804 29 H 0.187 0.813 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.162 0.838 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.014 0.986 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.452 -2.737 9.604 25.490 hybrid contribution 1.275 0.374 -0.627 1.469 sum -22.177 -2.364 8.977 24.042 Atomic orbital electron populations 1.23428 0.75955 1.06033 1.02572 1.86078 1.23831 1.25758 1.88417 1.20158 0.93202 0.86256 0.97993 1.23235 1.01574 0.86828 1.03241 1.67564 1.12563 1.27196 1.10656 1.22845 0.88610 0.99382 0.99029 1.20672 0.96981 0.92839 0.98429 1.20849 0.88779 1.02511 0.90370 1.60659 1.04833 1.52841 1.12806 1.21278 0.86756 0.94593 0.97515 1.22532 0.97052 0.97372 1.01604 1.20991 0.92791 0.96195 0.88308 1.44328 1.54555 1.10528 1.24077 1.19475 1.10788 0.92300 1.16857 0.91710 1.25811 0.97822 0.97694 1.03385 1.70182 1.34661 1.13137 1.40134 0.85354 0.77781 0.77544 0.79860 1.20040 1.22012 1.20509 1.20576 0.90970 0.84399 0.98866 1.21936 0.96087 1.00057 0.97015 1.21018 0.91961 0.98991 1.00914 0.91502 0.86036 0.91195 0.80423 0.81264 0.89641 0.92188 0.83833 0.91197 0.92526 0.90128 0.96780 0.92990 0.94114 0.98605 0.93034 0.91913 0.93598 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.82 113.37 1.11 1.24 16 2 O -0.33 -5.96 10.51 -92.54 -0.97 -6.93 16 3 C 0.07 1.45 6.71 22.60 0.15 1.60 16 4 C 0.01 0.18 10.22 84.82 0.87 1.04 16 5 N -0.47 -10.50 10.36 -195.44 -2.02 -12.53 16 6 C 0.06 1.21 10.85 84.68 0.92 2.13 16 7 C -0.09 -1.78 5.41 -19.79 -0.11 -1.89 16 8 C 0.10 2.11 5.63 85.56 0.48 2.60 16 9 N -0.68 -17.10 6.24 -495.42 -3.09 -20.19 16 10 C 0.11 3.34 2.43 44.94 0.11 3.45 16 11 C -0.15 -4.51 5.33 30.67 0.16 -4.35 16 12 C 0.14 5.81 6.52 86.36 0.56 6.38 16 13 N -0.61 -30.88 2.99 -699.11 -2.09 -32.97 16 14 C -0.26 -14.68 9.58 84.04 0.81 -13.88 16 15 H 0.07 3.51 7.89 -2.91 -0.02 3.48 16 16 C -0.05 -2.93 4.92 84.86 0.42 -2.51 16 17 N -0.94 -56.06 11.19 21.65 0.24 -55.82 16 18 Si 0.97 45.34 29.59 68.60 2.03 47.37 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 C 0.18 8.70 5.30 86.36 0.46 9.16 16 23 C -0.11 -4.24 5.69 30.67 0.17 -4.07 16 24 C -0.10 -2.17 9.81 22.56 0.22 -1.95 16 25 H 0.07 0.48 7.68 -2.39 -0.02 0.46 16 26 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.07 0.45 7.68 -2.39 -0.02 0.43 16 28 H 0.18 2.32 6.32 -2.91 -0.02 2.30 16 29 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 30 H 0.09 1.73 8.01 -2.39 -0.02 1.71 16 31 H 0.06 1.08 7.36 -2.38 -0.02 1.06 16 32 H 0.34 8.32 8.47 -89.70 -0.76 7.56 16 33 H 0.07 2.21 7.80 -2.38 -0.02 2.19 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 2.00 7.42 -2.39 -0.02 1.98 16 36 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 38 H 0.25 14.53 8.31 -92.71 -0.77 13.75 16 39 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.05 2.88 6.07 -2.39 -0.01 2.86 16 41 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -67.32 346.32 0.67 -66.64 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.24 Total: 15.47 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 6.34 Total: -1.06 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -6.96 Total: -121.50 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.97 Total: -6.93 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -67.32 0.67 -66.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850126474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.618 kcal (2) G-P(sol) polarization free energy of solvation -67.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds