Wall clock time and date at job start Tue Mar 31 2020 07:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36348 * 125.63725 * 2 1 4 4 C 1.34854 * 108.21927 * 180.02562 * 3 2 1 5 5 C 1.40896 * 107.41762 * 359.97438 * 4 3 2 6 6 C 1.34855 * 107.41478 * 359.74131 * 5 4 3 7 7 C 1.50697 * 125.88936 * 180.25225 * 6 5 4 8 8 N 1.46504 * 109.47306 * 95.19944 * 7 6 5 9 9 C 1.34772 * 120.00142 * 180.02562 * 8 7 6 10 10 O 1.21591 * 119.99821 * 355.01370 * 9 8 7 11 11 N 1.34777 * 120.00407 * 175.01108 * 9 8 7 12 12 C 1.46927 * 120.62481 * 4.94108 * 11 9 8 13 13 C 1.53629 * 108.54216 * 126.36626 * 12 11 9 14 14 C 1.53048 * 109.23865 * 54.85499 * 13 12 11 15 15 C 1.53041 * 109.53762 * 298.51360 * 14 13 12 16 16 H 1.09005 * 109.49481 * 301.40897 * 15 14 13 17 17 C 1.50695 * 109.49602 * 181.31797 * 15 14 13 18 18 H 1.08008 * 120.00451 * 0.15825 * 17 15 14 19 19 C 1.37879 * 120.00390 * 180.16136 * 17 15 14 20 20 N 1.31515 * 119.99668 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 120.00368 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47461 * 359.97438 * 21 19 17 23 23 H 1.48509 * 109.47265 * 119.99814 * 21 19 17 24 24 H 1.48504 * 109.46947 * 239.99668 * 21 19 17 25 25 C 1.46925 * 120.63478 * 185.22091 * 11 9 8 26 26 H 1.08996 * 109.47065 * 90.02302 * 1 2 3 27 27 H 1.09004 * 109.46998 * 330.02071 * 1 2 3 28 28 H 1.09005 * 109.47266 * 210.02964 * 1 2 3 29 29 H 1.07995 * 125.88980 * 0.02562 * 3 2 1 30 30 H 1.08001 * 126.29242 * 180.02562 * 4 3 2 31 31 H 1.07997 * 126.29415 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.47065 * 215.19932 * 7 6 5 33 33 H 1.09001 * 109.47153 * 335.19865 * 7 6 5 34 34 H 0.96998 * 119.99599 * 359.97438 * 8 7 6 35 35 H 1.08995 * 109.58843 * 246.19834 * 12 11 9 36 36 H 1.09003 * 109.58558 * 6.62768 * 12 11 9 37 37 H 1.09003 * 109.63454 * 294.86804 * 13 12 11 38 38 H 1.08996 * 109.45954 * 174.73795 * 13 12 11 39 39 H 1.08995 * 109.45801 * 178.49101 * 14 13 12 40 40 H 1.09003 * 109.44758 * 58.52386 * 14 13 12 41 41 H 0.96998 * 120.00288 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.58389 * 353.37756 * 25 11 9 43 43 H 1.08998 * 109.58196 * 113.79913 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7045 -0.0006 5 6 3.5461 -0.7045 -0.0003 6 6 2.2593 -1.1081 0.0062 7 6 1.7818 -2.5374 0.0142 8 7 1.5134 -2.9549 1.3926 9 6 1.0738 -4.2037 1.6450 10 8 0.8133 -4.9541 0.7244 11 7 0.9229 -4.6207 2.9177 12 6 1.1294 -3.6935 4.0386 13 6 -0.1201 -3.7211 4.9320 14 6 -0.4061 -5.1640 5.3546 15 6 -0.6828 -6.0156 4.1135 16 1 -1.5312 -5.6006 3.5693 17 6 -0.9960 -7.4287 4.5328 18 1 -1.0003 -7.6930 5.5801 19 6 -1.2772 -8.3845 3.5797 20 7 -1.2725 -8.0627 2.3045 21 14 -1.6662 -10.1360 4.0995 22 1 -1.6073 -10.2377 5.5798 23 1 -3.0277 -10.5005 3.6315 24 1 -0.6723 -11.0624 3.5002 25 6 0.5548 -6.0126 3.2108 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3633 0.8902 0.5135 28 1 -0.3634 -0.8897 0.5143 29 1 1.9172 2.1324 0.0004 30 1 4.4166 1.3437 -0.0003 31 1 4.4165 -1.3438 -0.0011 32 1 0.8680 -2.6185 -0.5745 33 1 2.5499 -3.1795 -0.4169 34 1 1.6529 -2.3328 2.1236 35 1 2.0007 -4.0049 4.6146 36 1 1.2837 -2.6850 3.6549 37 1 -0.9738 -3.3277 4.3800 38 1 0.0533 -3.1101 5.8178 39 1 -1.2764 -5.1845 6.0105 40 1 0.4578 -5.5649 5.8849 41 1 -1.4699 -8.7351 1.6338 42 1 0.3300 -6.5347 2.2807 43 1 1.3803 -6.5092 3.7207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852161862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:00 Heat of formation + Delta-G solvation = 23.988428 kcal Electronic energy + Delta-G solvation = -23606.984543 eV Core-core repulsion = 20267.161549 eV Total energy + Delta-G solvation = -3339.822993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.37296 -39.58992 -36.86236 -34.46739 -33.26959 -32.97945 -31.75064 -30.03774 -29.40624 -26.50636 -25.70487 -25.00841 -23.75255 -21.80568 -20.70753 -20.06467 -19.57728 -18.72578 -17.69324 -16.77525 -16.13347 -15.86104 -15.15411 -15.05568 -14.58286 -14.25019 -13.77110 -13.65043 -13.47918 -13.44035 -13.11242 -12.73190 -12.60382 -12.46588 -12.36043 -12.18352 -12.04298 -11.90738 -11.68662 -10.98375 -10.88685 -10.47931 -10.38969 -10.21130 -9.85650 -9.46559 -9.07720 -8.92892 -8.75857 -8.72699 -8.39788 -8.21720 -7.61357 -5.95802 -4.05020 1.98083 2.80202 2.84646 3.31673 3.40349 3.43290 3.47159 3.86050 4.42621 4.50912 4.62284 4.63700 4.94801 4.98589 5.26105 5.29488 5.31360 5.34047 5.49421 5.49976 5.62265 5.67974 5.76627 5.99174 6.14212 6.17282 6.23690 6.32446 6.59895 6.68307 6.78334 6.82260 6.89920 7.00820 7.06739 7.10001 7.21398 7.37803 7.53160 7.77524 7.95531 8.09287 8.43671 8.60924 8.98825 9.27183 9.60490 11.09056 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028088 B = 0.003560 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.613661 B = 7863.627177 C = 8278.328954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.442 5.442 3 C -0.011 4.011 4 C -0.204 4.204 5 C -0.177 4.177 6 C -0.002 4.002 7 C 0.211 3.789 8 N -0.755 5.755 9 C 0.700 3.300 10 O -0.582 6.582 11 N -0.622 5.622 12 C 0.116 3.884 13 C -0.132 4.132 14 C -0.110 4.110 15 C 0.040 3.960 16 H 0.028 0.972 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.878 5.878 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.129 3.871 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.161 0.839 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.392 0.608 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.262 0.738 42 H 0.123 0.877 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.321 18.557 -1.969 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.118 5.118 3 C -0.142 4.142 4 C -0.229 4.229 5 C -0.202 4.202 6 C -0.114 4.114 7 C 0.086 3.914 8 N -0.416 5.416 9 C 0.401 3.599 10 O -0.459 6.459 11 N -0.359 5.359 12 C -0.008 4.008 13 C -0.171 4.171 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.046 0.954 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 C 0.008 3.992 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.178 0.822 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.227 0.773 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.141 0.859 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.703 17.861 -2.848 18.964 hybrid contribution -0.161 -0.448 0.619 0.781 sum 5.542 17.413 -2.229 18.409 Atomic orbital electron populations 1.22070 0.77228 1.04619 1.03452 1.43987 1.06195 1.05710 1.55914 1.21827 0.90619 0.91274 1.10472 1.20886 0.95918 0.95048 1.11066 1.20785 0.95206 0.95124 1.09125 1.20390 0.90576 0.88365 1.12053 1.19356 1.00880 0.87466 0.83705 1.45461 1.74048 1.13825 1.08254 1.15958 0.78560 0.81420 0.83952 1.90938 1.57043 1.54704 1.43228 1.47786 1.72061 1.13433 1.02579 1.21573 0.98120 0.92136 0.89021 1.22019 0.97428 0.99317 0.98326 1.21616 1.00191 0.92959 0.99965 1.18982 0.93688 0.94586 0.90719 0.95393 1.21113 1.48081 0.93741 0.93030 0.92367 1.25063 0.95107 0.98896 0.95007 1.69912 1.48043 1.33875 0.99711 0.86552 0.77956 0.84936 0.78647 1.19827 1.21061 1.20973 1.22182 0.96378 0.76548 1.04072 0.90788 0.89857 0.89440 0.82204 0.84713 0.84558 0.91439 0.89807 0.77253 0.92091 0.92279 0.92303 0.92414 0.93108 0.93182 0.92739 0.85879 0.94266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 10.80 59.84 0.65 1.20 16 2 N -0.44 -4.63 3.15 -119.90 -0.38 -5.00 16 3 C -0.01 -0.11 11.43 -16.74 -0.19 -0.30 16 4 C -0.20 -2.12 10.86 -39.78 -0.43 -2.56 16 5 C -0.18 -2.06 10.77 -39.78 -0.43 -2.49 16 6 C 0.00 -0.03 6.26 -81.79 -0.51 -0.54 16 7 C 0.21 2.93 5.58 -5.19 -0.03 2.90 16 8 N -0.76 -11.65 5.46 -66.41 -0.36 -12.02 16 9 C 0.70 14.43 8.30 -86.92 -0.72 13.71 16 10 O -0.58 -14.71 15.77 5.29 0.08 -14.63 16 11 N -0.62 -12.69 2.97 -178.24 -0.53 -13.21 16 12 C 0.12 1.82 6.42 -3.48 -0.02 1.80 16 13 C -0.13 -2.14 6.10 -26.38 -0.16 -2.30 16 14 C -0.11 -2.18 5.10 -26.69 -0.14 -2.32 16 15 C 0.04 0.98 2.25 -91.66 -0.21 0.78 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.52 -14.19 8.56 -34.44 -0.29 -14.48 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 20 N -0.88 -25.84 11.39 55.43 0.63 -25.21 16 21 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.13 3.16 5.41 -3.72 -0.02 3.14 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.82 7.73 -51.93 -0.40 0.42 16 29 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.07 0.98 7.94 -51.93 -0.41 0.57 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.39 5.26 5.95 -40.82 -0.24 5.01 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.76 5.64 -51.93 -0.29 0.47 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.12 3.55 5.11 -51.93 -0.27 3.29 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 346.74 15.07 5.23 5.23 Total: -1.00 -32.77 346.74 -9.60 -42.38 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.65 Total: 5.95 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.60 Total: 0.18 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.64 Total: -55.44 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.08 Total: -14.63 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.77 -9.60 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852161862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.367 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds