Wall clock time and date at job start Tue Mar 31 2020 07:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36348 * 125.63725 * 2 1 4 4 C 1.34854 * 108.21927 * 180.02562 * 3 2 1 5 5 C 1.40896 * 107.41762 * 359.97438 * 4 3 2 6 6 C 1.34855 * 107.41478 * 359.74131 * 5 4 3 7 7 C 1.50697 * 125.88936 * 180.25225 * 6 5 4 8 8 N 1.46504 * 109.47306 * 95.19944 * 7 6 5 9 9 C 1.34772 * 120.00142 * 180.02562 * 8 7 6 10 10 O 1.21591 * 119.99821 * 355.01370 * 9 8 7 11 11 N 1.34777 * 120.00407 * 175.01108 * 9 8 7 12 12 C 1.46927 * 120.62481 * 4.94108 * 11 9 8 13 13 C 1.53629 * 108.54216 * 126.36626 * 12 11 9 14 14 C 1.53048 * 109.23865 * 54.85499 * 13 12 11 15 15 C 1.53041 * 109.53762 * 298.51360 * 14 13 12 16 16 H 1.09005 * 109.49481 * 301.40897 * 15 14 13 17 17 C 1.50695 * 109.49602 * 181.31797 * 15 14 13 18 18 H 1.08008 * 120.00451 * 0.15825 * 17 15 14 19 19 C 1.37879 * 120.00390 * 180.16136 * 17 15 14 20 20 N 1.31515 * 119.99668 * 359.97438 * 19 17 15 21 21 Si 1.86793 * 120.00368 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47461 * 359.97438 * 21 19 17 23 23 H 1.48509 * 109.47265 * 119.99814 * 21 19 17 24 24 H 1.48504 * 109.46947 * 239.99668 * 21 19 17 25 25 C 1.46925 * 120.63478 * 185.22091 * 11 9 8 26 26 H 1.08996 * 109.47065 * 90.02302 * 1 2 3 27 27 H 1.09004 * 109.46998 * 330.02071 * 1 2 3 28 28 H 1.09005 * 109.47266 * 210.02964 * 1 2 3 29 29 H 1.07995 * 125.88980 * 0.02562 * 3 2 1 30 30 H 1.08001 * 126.29242 * 180.02562 * 4 3 2 31 31 H 1.07997 * 126.29415 * 179.97438 * 5 4 3 32 32 H 1.09003 * 109.47065 * 215.19932 * 7 6 5 33 33 H 1.09001 * 109.47153 * 335.19865 * 7 6 5 34 34 H 0.96998 * 119.99599 * 359.97438 * 8 7 6 35 35 H 1.08995 * 109.58843 * 246.19834 * 12 11 9 36 36 H 1.09003 * 109.58558 * 6.62768 * 12 11 9 37 37 H 1.09003 * 109.63454 * 294.86804 * 13 12 11 38 38 H 1.08996 * 109.45954 * 174.73795 * 13 12 11 39 39 H 1.08995 * 109.45801 * 178.49101 * 14 13 12 40 40 H 1.09003 * 109.44758 * 58.52386 * 14 13 12 41 41 H 0.96998 * 120.00288 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.58389 * 353.37756 * 25 11 9 43 43 H 1.08998 * 109.58196 * 113.79913 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7045 -0.0006 5 6 3.5461 -0.7045 -0.0003 6 6 2.2593 -1.1081 0.0062 7 6 1.7818 -2.5374 0.0142 8 7 1.5134 -2.9549 1.3926 9 6 1.0738 -4.2037 1.6450 10 8 0.8133 -4.9541 0.7244 11 7 0.9229 -4.6207 2.9177 12 6 1.1294 -3.6935 4.0386 13 6 -0.1201 -3.7211 4.9320 14 6 -0.4061 -5.1640 5.3546 15 6 -0.6828 -6.0156 4.1135 16 1 -1.5312 -5.6006 3.5693 17 6 -0.9960 -7.4287 4.5328 18 1 -1.0003 -7.6930 5.5801 19 6 -1.2772 -8.3845 3.5797 20 7 -1.2725 -8.0627 2.3045 21 14 -1.6662 -10.1360 4.0995 22 1 -1.6073 -10.2377 5.5798 23 1 -3.0277 -10.5005 3.6315 24 1 -0.6723 -11.0624 3.5002 25 6 0.5548 -6.0126 3.2108 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3633 0.8902 0.5135 28 1 -0.3634 -0.8897 0.5143 29 1 1.9172 2.1324 0.0004 30 1 4.4166 1.3437 -0.0003 31 1 4.4165 -1.3438 -0.0011 32 1 0.8680 -2.6185 -0.5745 33 1 2.5499 -3.1795 -0.4169 34 1 1.6529 -2.3328 2.1236 35 1 2.0007 -4.0049 4.6146 36 1 1.2837 -2.6850 3.6549 37 1 -0.9738 -3.3277 4.3800 38 1 0.0533 -3.1101 5.8178 39 1 -1.2764 -5.1845 6.0105 40 1 0.4578 -5.5649 5.8849 41 1 -1.4699 -8.7351 1.6338 42 1 0.3300 -6.5347 2.2807 43 1 1.3803 -6.5092 3.7207 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852161862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:59 Heat of formation + Delta-G solvation = 3.627268 kcal Electronic energy + Delta-G solvation = -23607.867469 eV Core-core repulsion = 20267.161549 eV Total energy + Delta-G solvation = -3340.705919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.21414 -41.17160 -38.51387 -35.96032 -35.15962 -33.71661 -33.45078 -31.60765 -30.71119 -27.20541 -27.19889 -26.68842 -25.25859 -23.45136 -21.73122 -21.49190 -20.73010 -20.06145 -19.10891 -18.29928 -17.66050 -17.19313 -16.64593 -16.43846 -16.05967 -15.44778 -15.20547 -15.13561 -14.94448 -14.61656 -14.33141 -14.19292 -14.07444 -13.66364 -13.50290 -13.32097 -13.13710 -12.90461 -12.90084 -12.72800 -12.63498 -12.27383 -12.20704 -11.88141 -11.63094 -11.25630 -10.95719 -10.83461 -10.51480 -10.22709 -9.51600 -9.26972 -9.06091 -8.08653 -6.26218 1.06431 1.40647 1.42285 1.54263 1.86729 2.06467 2.18746 2.22990 2.43256 3.09406 3.21116 3.66751 3.98462 4.02623 4.13069 4.17294 4.27965 4.38640 4.40242 4.55792 4.60111 4.69435 4.72642 4.73990 4.80489 4.82766 4.85635 5.10333 5.25471 5.27079 5.31623 5.37319 5.41385 5.45299 5.57689 5.64822 5.89464 5.98169 6.06985 6.15560 6.26638 6.37064 6.48036 6.87178 7.10540 7.43764 7.65810 8.94540 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028088 B = 0.003560 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.613661 B = 7863.627177 C = 8278.328954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.445 5.445 3 C 0.001 3.999 4 C -0.220 4.220 5 C -0.184 4.184 6 C -0.023 4.023 7 C 0.216 3.784 8 N -0.730 5.730 9 C 0.694 3.306 10 O -0.638 6.638 11 N -0.627 5.627 12 C 0.111 3.889 13 C -0.124 4.124 14 C -0.104 4.104 15 C 0.039 3.961 16 H -0.015 1.015 17 C -0.535 4.535 18 H 0.062 0.938 19 C 0.009 3.991 20 N -0.914 5.914 21 Si 0.958 3.042 22 H -0.260 1.260 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.143 3.857 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.195 0.805 30 H 0.153 0.847 31 H 0.137 0.863 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.405 0.595 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.103 0.897 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.259 0.741 42 H 0.076 0.924 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.048 21.215 -0.231 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.120 5.120 3 C -0.130 4.130 4 C -0.244 4.244 5 C -0.210 4.210 6 C -0.134 4.134 7 C 0.092 3.908 8 N -0.390 5.390 9 C 0.396 3.604 10 O -0.519 6.519 11 N -0.362 5.362 12 C -0.011 4.011 13 C -0.162 4.162 14 C -0.142 4.142 15 C 0.019 3.981 16 H 0.003 0.997 17 C -0.574 4.574 18 H 0.081 0.919 19 C -0.191 4.191 20 N -0.553 5.553 21 Si 0.783 3.217 22 H -0.184 1.184 23 H -0.209 1.209 24 H -0.209 1.209 25 C 0.020 3.980 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.089 0.911 29 H 0.212 0.788 30 H 0.170 0.830 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.244 0.756 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.444 20.585 -1.064 21.596 hybrid contribution -0.378 -1.184 0.056 1.244 sum 6.066 19.401 -1.008 20.353 Atomic orbital electron populations 1.22216 0.76038 1.05165 1.04204 1.44167 1.07019 1.05439 1.55422 1.22412 0.90239 0.92276 1.08074 1.21175 0.97179 0.94487 1.11580 1.20993 0.95081 0.96230 1.08675 1.20033 0.91135 0.87661 1.14609 1.19267 1.00085 0.89045 0.82406 1.45228 1.72291 1.11946 1.09538 1.16175 0.78421 0.82422 0.83397 1.90897 1.59369 1.56667 1.44978 1.47683 1.71819 1.12749 1.03978 1.21920 0.98719 0.92773 0.87688 1.21973 0.97151 0.97092 1.00016 1.21503 1.00595 0.94707 0.97401 1.18911 0.92133 0.94446 0.92597 0.99693 1.21550 1.47475 0.95154 0.93174 0.91942 1.25913 0.95096 1.03175 0.94895 1.70115 1.49307 1.34973 1.00880 0.85506 0.77501 0.79802 0.78851 1.18383 1.20920 1.20882 1.21589 0.96065 0.78785 1.01550 0.90018 0.87028 0.91140 0.78847 0.82972 0.84486 0.92564 0.90761 0.75650 0.90187 0.88787 0.93241 0.87826 0.92957 0.92366 0.93211 0.90598 0.94692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.92 10.80 127.77 1.38 2.30 16 2 N -0.45 -8.29 3.15 -533.25 -1.68 -9.97 16 3 C 0.00 0.02 11.43 83.21 0.95 0.97 16 4 C -0.22 -3.98 10.86 22.14 0.24 -3.74 16 5 C -0.18 -4.03 10.77 22.14 0.24 -3.79 16 6 C -0.02 -0.53 6.26 41.08 0.26 -0.27 16 7 C 0.22 6.11 5.58 85.63 0.48 6.59 16 8 N -0.73 -22.32 5.46 -482.29 -2.63 -24.95 16 9 C 0.69 29.42 8.30 179.06 1.49 30.91 16 10 O -0.64 -34.17 15.77 -4.00 -0.06 -34.23 16 11 N -0.63 -25.75 2.97 -836.07 -2.48 -28.23 16 12 C 0.11 3.21 6.42 86.51 0.56 3.77 16 13 C -0.12 -3.66 6.10 30.82 0.19 -3.47 16 14 C -0.10 -4.03 5.10 30.62 0.16 -3.88 16 15 C 0.04 1.97 2.25 -11.47 -0.03 1.94 16 16 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 17 C -0.53 -29.76 8.56 25.60 0.22 -29.54 16 18 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 19 C 0.01 0.49 5.30 84.66 0.45 0.94 16 20 N -0.91 -56.49 11.39 21.45 0.24 -56.25 16 21 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 25 C 0.14 7.30 5.41 86.36 0.47 7.76 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.07 1.25 7.73 -2.38 -0.02 1.23 16 29 H 0.19 1.63 8.06 -2.91 -0.02 1.60 16 30 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 31 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 32 H 0.06 1.71 7.94 -2.39 -0.02 1.69 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.40 10.08 5.95 -92.71 -0.55 9.53 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.09 2.06 5.64 -2.39 -0.01 2.05 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.08 4.66 5.11 -2.39 -0.01 4.65 16 43 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -76.29 346.74 2.90 -73.38 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.45 Total: 22.99 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 7.04 Total: 10.49 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -6.55 Total: -119.40 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.06 Total: -34.23 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -76.29 2.90 -73.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852161862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.011 kcal (2) G-P(sol) polarization free energy of solvation -76.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds