Wall clock time and date at job start Tue Mar 31 2020 07:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36342 * 125.63482 * 2 1 4 4 C 1.34849 * 108.21833 * 180.26275 * 3 2 1 5 5 C 1.40898 * 107.41535 * 359.74404 * 4 3 2 6 6 C 1.34851 * 107.41611 * 359.97438 * 5 4 3 7 7 C 1.50697 * 125.88754 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.47285 * 95.02340 * 7 6 5 9 9 C 1.34777 * 119.99901 * 179.97438 * 8 7 6 10 10 O 1.21586 * 120.00103 * 354.92471 * 9 8 7 11 11 N 1.34777 * 120.00013 * 174.92292 * 9 8 7 12 12 C 1.46926 * 120.63101 * 4.74546 * 11 9 8 13 13 C 1.52766 * 109.01051 * 233.58605 * 12 11 9 14 14 C 1.53034 * 109.37979 * 305.58345 * 13 12 11 15 15 C 1.53046 * 109.53867 * 61.24094 * 14 13 12 16 16 H 1.08995 * 109.49727 * 58.58440 * 15 14 13 17 17 C 1.50697 * 109.52551 * 178.66213 * 15 14 13 18 18 H 1.07998 * 120.00464 * 359.85949 * 17 15 14 19 19 C 1.37882 * 119.99821 * 179.85237 * 17 15 14 20 20 N 1.31514 * 120.00020 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99649 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47557 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47236 * 120.00475 * 21 19 17 24 24 H 1.48502 * 109.46928 * 240.00069 * 21 19 17 25 25 C 1.46921 * 120.63458 * 185.02524 * 11 9 8 26 26 H 1.09002 * 109.46939 * 270.18404 * 1 2 3 27 27 H 1.08994 * 109.47205 * 30.19042 * 1 2 3 28 28 H 1.09002 * 109.46885 * 150.18991 * 1 2 3 29 29 H 1.08000 * 125.88907 * 359.97438 * 3 2 1 30 30 H 1.07999 * 126.29533 * 179.76137 * 4 3 2 31 31 H 1.08003 * 126.28576 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47051 * 335.02285 * 7 6 5 33 33 H 1.09004 * 109.47387 * 215.02700 * 7 6 5 34 34 H 0.97001 * 120.00366 * 0.02562 * 8 7 6 35 35 H 1.09004 * 109.58434 * 353.41810 * 12 11 9 36 36 H 1.08999 * 109.59282 * 113.84045 * 12 11 9 37 37 H 1.09004 * 109.56183 * 185.55113 * 13 12 11 38 38 H 1.08996 * 109.36079 * 65.49293 * 13 12 11 39 39 H 1.09003 * 109.46429 * 301.22190 * 14 13 12 40 40 H 1.08999 * 109.45384 * 181.25067 * 14 13 12 41 41 H 0.97003 * 119.99613 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.58781 * 246.15699 * 25 11 9 43 43 H 1.09000 * 109.58802 * 6.44023 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5460 0.7045 -0.0059 5 6 3.5460 -0.7045 -0.0036 6 6 2.2594 -1.1081 0.0041 7 6 1.7819 -2.5374 0.0096 8 7 1.5199 -2.9595 1.3877 9 6 1.0804 -4.2088 1.6378 10 8 0.8133 -4.9553 0.7160 11 7 0.9370 -4.6307 2.9098 12 6 1.1558 -3.7095 4.0332 13 6 2.1710 -4.3273 4.9931 14 6 1.6953 -5.7218 5.4068 15 6 1.5922 -6.6157 4.1688 16 1 2.5642 -6.6723 3.6790 17 6 1.1553 -7.9979 4.5806 18 1 0.9717 -8.2185 5.6218 19 6 0.9900 -8.9810 3.6281 20 7 1.2140 -8.7125 2.3603 21 14 0.4478 -10.6942 4.1385 22 1 0.2627 -10.7367 5.6113 23 1 -0.8353 -11.0273 3.4691 24 1 1.4843 -11.6804 3.7407 25 6 0.5651 -6.0222 3.1996 26 1 -0.3633 0.0033 1.0277 27 1 -0.3633 0.8882 -0.5168 28 1 -0.3633 -0.8917 -0.5109 29 1 1.9171 2.1324 -0.0004 30 1 4.4165 1.3437 -0.0110 31 1 4.4166 -1.3437 -0.0074 32 1 2.5480 -3.1780 -0.4272 33 1 0.8654 -2.6166 -0.5752 34 1 1.6619 -2.3396 2.1202 35 1 1.5399 -2.7608 3.6583 36 1 0.2150 -3.5432 4.5581 37 1 2.2665 -3.6981 5.8780 38 1 3.1376 -4.4055 4.4955 39 1 0.7173 -5.6457 5.8822 40 1 2.4076 -6.1548 6.1090 41 1 1.0973 -9.4041 1.6902 42 1 -0.4249 -6.0486 3.6550 43 1 0.5571 -6.5986 2.2744 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852161863.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:04 Heat of formation + Delta-G solvation = 24.315198 kcal Electronic energy + Delta-G solvation = -23593.871487 eV Core-core repulsion = 20254.062663 eV Total energy + Delta-G solvation = -3339.808823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.37171 -39.59808 -36.87926 -34.46937 -33.26912 -32.99160 -31.75101 -30.05447 -29.41747 -26.52405 -25.70236 -25.00782 -23.75633 -21.79098 -20.70222 -20.07142 -19.56381 -18.71605 -17.70066 -16.78947 -16.11492 -15.88192 -15.16240 -15.04162 -14.55238 -14.25476 -13.84724 -13.72193 -13.55321 -13.40156 -12.98789 -12.64140 -12.60367 -12.49402 -12.42366 -12.18836 -12.09504 -11.90990 -11.62761 -10.97790 -10.88152 -10.46193 -10.36910 -10.20559 -9.85728 -9.47863 -9.07944 -8.93177 -8.73671 -8.72382 -8.39597 -8.21099 -7.61611 -5.95933 -4.04787 1.98492 2.79124 2.85675 3.31941 3.40576 3.43554 3.46924 3.87786 4.42642 4.50727 4.58796 4.63602 4.93490 4.94749 5.19295 5.30005 5.32990 5.34266 5.50509 5.52989 5.62907 5.68777 5.79165 6.00255 6.15246 6.18821 6.25447 6.34113 6.61442 6.68874 6.79042 6.83747 6.90657 7.01344 7.08719 7.10260 7.21360 7.37395 7.53145 7.78006 7.95986 8.09389 8.43863 8.61123 8.99034 9.27028 9.60691 11.09190 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.027894 B = 0.003555 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.564634 B = 7875.129706 C = 8292.840073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.443 5.443 3 C -0.012 4.012 4 C -0.204 4.204 5 C -0.176 4.176 6 C -0.003 4.003 7 C 0.211 3.789 8 N -0.755 5.755 9 C 0.701 3.299 10 O -0.584 6.584 11 N -0.622 5.622 12 C 0.116 3.884 13 C -0.134 4.134 14 C -0.109 4.109 15 C 0.039 3.961 16 H 0.029 0.971 17 C -0.520 4.520 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.879 5.879 21 Si 0.892 3.108 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.130 3.870 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.160 0.840 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.392 0.608 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.263 0.737 42 H 0.038 0.962 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 20.160 -2.206 20.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.119 5.119 3 C -0.143 4.143 4 C -0.228 4.228 5 C -0.201 4.201 6 C -0.114 4.114 7 C 0.086 3.914 8 N -0.415 5.415 9 C 0.403 3.597 10 O -0.462 6.462 11 N -0.358 5.358 12 C -0.008 4.008 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.047 0.953 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.516 5.516 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.009 3.991 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.178 0.822 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.228 0.772 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.359 19.467 -3.084 19.713 hybrid contribution -0.198 -0.446 0.637 0.802 sum -0.557 19.021 -2.447 19.185 Atomic orbital electron populations 1.22035 0.77356 1.04354 1.03412 1.43969 1.06131 1.05727 1.56085 1.21815 0.90621 0.91234 1.10598 1.20894 0.95929 0.95065 1.10940 1.20811 0.95277 0.95132 1.08894 1.20381 0.90592 0.88338 1.12099 1.19353 1.00832 0.87460 0.83712 1.45432 1.74022 1.13855 1.08182 1.15936 0.78564 0.81326 0.83905 1.90921 1.57222 1.54889 1.43157 1.47784 1.72043 1.13488 1.02512 1.21394 0.98827 0.91769 0.88796 1.21874 0.98814 0.98531 0.98000 1.21609 0.99701 0.93421 0.99967 1.18995 0.95689 0.92888 0.90476 0.95327 1.21111 1.46923 0.94299 0.93581 0.92350 1.25062 0.95174 0.98815 0.95016 1.69908 1.48078 1.33502 1.00138 0.86546 0.78313 0.84580 0.78615 1.19827 1.20995 1.21034 1.22175 0.96742 0.76119 1.04037 0.90885 0.89942 0.89597 0.82215 0.84688 0.84480 0.89721 0.91562 0.77232 0.92252 0.92282 0.92349 0.92134 0.93238 0.93065 0.92729 0.94359 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.53 10.92 59.85 0.65 1.18 16 2 N -0.44 -4.55 3.15 -119.90 -0.38 -4.93 16 3 C -0.01 -0.11 11.43 -16.75 -0.19 -0.31 16 4 C -0.20 -2.15 10.86 -39.78 -0.43 -2.58 16 5 C -0.18 -2.11 10.77 -39.78 -0.43 -2.54 16 6 C 0.00 -0.04 6.26 -81.79 -0.51 -0.55 16 7 C 0.21 2.96 5.84 -5.20 -0.03 2.93 16 8 N -0.75 -11.76 5.46 -66.42 -0.36 -12.12 16 9 C 0.70 14.52 8.30 -86.92 -0.72 13.80 16 10 O -0.58 -14.74 15.78 5.29 0.08 -14.66 16 11 N -0.62 -12.73 2.98 -178.76 -0.53 -13.26 16 12 C 0.12 1.84 6.40 -3.93 -0.03 1.82 16 13 C -0.13 -2.18 6.06 -26.83 -0.16 -2.35 16 14 C -0.11 -2.19 5.11 -26.69 -0.14 -2.33 16 15 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.52 -14.20 8.57 -34.44 -0.29 -14.50 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 20 N -0.88 -25.89 11.39 55.43 0.63 -25.26 16 21 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.13 3.20 5.39 -3.71 -0.02 3.18 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.69 7.11 -51.93 -0.37 0.32 16 29 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 0.94 7.21 -51.93 -0.37 0.56 16 34 H 0.39 5.32 5.92 -40.82 -0.24 5.08 16 35 H 0.06 0.77 5.57 -51.93 -0.29 0.48 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.12 3.54 5.15 -51.93 -0.27 3.27 16 LS Contribution 345.68 15.07 5.21 5.21 Total: -1.00 -32.89 345.68 -9.55 -42.44 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.58 Total: 6.03 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.60 Total: 0.18 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.64 Total: -55.57 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.08 Total: -14.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.89 -9.55 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852161863.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.759 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds