Wall clock time and date at job start Tue Mar 31 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46954 * 2 1 4 4 C 1.46501 * 119.99735 * 94.98675 * 3 2 1 5 5 C 1.50694 * 109.47373 * 269.99730 * 4 3 2 6 6 H 1.08010 * 119.99871 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00507 * 179.72343 * 5 4 3 8 8 N 1.31517 * 119.99473 * 0.28211 * 7 5 4 9 9 Si 1.86794 * 120.00136 * 180.27529 * 7 5 4 10 10 H 1.48499 * 109.47280 * 60.00732 * 9 7 5 11 11 H 1.48499 * 109.47005 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47264 * 300.00332 * 9 7 5 13 13 C 1.34770 * 120.00209 * 274.98434 * 3 2 1 14 14 O 1.21279 * 120.00281 * 174.40388 * 13 3 2 15 15 C 1.50699 * 119.99830 * 354.40397 * 13 3 2 16 16 H 1.09001 * 109.71838 * 20.35762 * 15 13 3 17 17 C 1.50882 * 109.71945 * 140.96245 * 15 13 3 18 18 C 1.34574 * 128.32966 * 283.11203 * 17 15 13 19 19 N 1.35193 * 107.61976 * 180.13292 * 18 17 15 20 20 H 0.97006 * 126.00473 * 179.97438 * 19 18 17 21 21 N 1.40311 * 107.99355 * 359.96598 * 19 18 17 22 22 C 1.30123 * 108.12312 * 359.95207 * 21 19 18 23 23 C 1.50953 * 128.28702 * 180.30469 * 22 21 19 24 24 C 1.53364 * 108.20729 * 163.17457 * 23 22 21 25 25 C 1.53031 * 109.74960 * 50.64779 * 24 23 22 26 26 H 1.09000 * 109.43009 * 48.34385 * 25 24 23 27 27 C 1.53000 * 109.43135 * 168.19504 * 25 24 23 28 28 H 1.09004 * 109.47054 * 183.58269 * 1 2 3 29 29 H 1.08995 * 109.47360 * 303.58630 * 1 2 3 30 30 H 1.09004 * 109.46915 * 63.58898 * 1 2 3 31 31 H 1.08994 * 109.47509 * 240.00053 * 2 1 3 32 32 H 1.09000 * 109.47164 * 119.99791 * 2 1 3 33 33 H 1.09005 * 109.46952 * 149.99701 * 4 3 2 34 34 H 1.09001 * 109.47341 * 30.00223 * 4 3 2 35 35 H 0.97000 * 119.99392 * 179.97438 * 8 7 5 36 36 H 1.08002 * 126.18801 * 0.10022 * 18 17 15 37 37 H 1.08998 * 109.71913 * 282.85511 * 23 22 21 38 38 H 1.09005 * 109.71411 * 43.49843 * 23 22 21 39 39 H 1.09003 * 109.42846 * 170.73296 * 24 23 22 40 40 H 1.09006 * 109.42453 * 290.62085 * 24 23 22 41 41 H 1.09000 * 109.46601 * 180.77378 * 27 25 24 42 42 H 1.08996 * 109.46992 * 300.77410 * 27 25 24 43 43 H 1.08995 * 109.46903 * 60.77743 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3664 2.0351 1.2640 5 6 1.1514 2.7311 1.8209 6 1 0.2134 2.6901 1.2869 7 6 1.2353 3.4149 3.0152 8 7 2.3774 3.4644 3.6656 9 14 -0.2728 4.2712 3.7092 10 1 -1.3458 3.2716 3.9431 11 1 0.0789 4.9299 4.9929 12 1 -0.7502 5.2932 2.7434 13 6 2.1473 2.0504 -1.1627 14 8 2.4537 3.2239 -1.1563 15 6 1.9108 1.3405 -2.4708 16 1 1.3145 0.4442 -2.3003 17 6 1.1879 2.2589 -3.4250 18 6 -0.1157 2.5931 -3.4354 19 7 -0.3130 3.4392 -4.4712 20 1 -1.1575 3.8443 -4.7238 21 7 0.9183 3.6286 -5.1167 22 6 1.8160 2.9245 -4.4909 23 6 3.2890 2.8015 -4.7973 24 6 3.9881 2.2182 -3.5632 25 6 3.2552 0.9566 -3.1017 26 1 3.0810 0.3048 -3.9578 27 6 4.1105 0.2203 -2.0686 28 1 -0.3633 -1.0257 0.0642 29 1 -0.3634 0.5685 0.8560 30 1 -0.3633 0.4571 -0.9204 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.1559 2.7662 1.0895 34 1 2.7150 1.2870 1.9761 35 1 2.4365 3.9459 4.5056 36 1 -0.8682 2.2474 -2.7421 37 1 3.4331 2.1376 -5.6497 38 1 3.7010 3.7851 -5.0228 39 1 5.0185 1.9672 -3.8150 40 1 3.9804 2.9552 -2.7600 41 1 3.5951 -0.6857 -1.7496 42 1 5.0696 -0.0447 -2.5134 43 1 4.2758 0.8668 -1.2067 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879097363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:03 Heat of formation + Delta-G solvation = 27.471544 kcal Electronic energy + Delta-G solvation = -24811.036966 eV Core-core repulsion = 21471.365012 eV Total energy + Delta-G solvation = -3339.671954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.44444 -39.27720 -36.42904 -35.15020 -32.88079 -32.26108 -30.90413 -29.93182 -29.49958 -27.41141 -26.11566 -23.90291 -22.92645 -22.68888 -20.97701 -20.61019 -19.20593 -18.01737 -17.11401 -16.50807 -16.38338 -15.26616 -15.12669 -14.66135 -14.43078 -14.20630 -13.67609 -13.56270 -13.11958 -12.98850 -12.85742 -12.59036 -12.42061 -12.11908 -12.00986 -11.85329 -11.49094 -11.26237 -11.14826 -11.01527 -10.91541 -10.71251 -10.61358 -10.50446 -10.48420 -10.03120 -9.92772 -9.54106 -9.19132 -8.85235 -8.39452 -8.10423 -7.55841 -6.00542 -4.03882 2.08313 2.89816 3.00922 3.31810 3.36910 3.39258 3.56468 4.09855 4.47453 4.55949 4.86576 4.97612 5.04957 5.24433 5.30680 5.35250 5.41607 5.51405 5.61164 5.62990 5.71925 5.73449 5.78710 5.83161 5.94453 5.95354 6.06560 6.10868 6.17634 6.26387 6.32483 6.36108 6.46780 6.68040 6.74851 6.82760 7.14555 7.44096 7.48806 7.64908 7.85314 7.96804 8.29325 8.54100 8.96138 9.23929 9.60725 11.07509 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016816 B = 0.005633 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.661871 B = 4969.249069 C = 5508.697935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.518 4.518 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.518 3.482 14 O -0.530 6.530 15 C -0.032 4.032 16 H 0.091 0.909 17 C -0.207 4.207 18 C 0.068 3.932 19 N -0.487 5.487 20 H 0.437 0.563 21 N -0.297 5.297 22 C 0.096 3.904 23 C -0.034 4.034 24 C -0.123 4.123 25 C -0.072 4.072 26 H 0.076 0.924 27 C -0.155 4.155 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.030 0.970 35 H 0.262 0.738 36 H 0.173 0.827 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.370 -9.103 -14.582 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.557 4.557 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 C 0.304 3.696 14 O -0.407 6.407 15 C -0.055 4.055 16 H 0.109 0.891 17 C -0.219 4.219 18 C -0.078 4.078 19 N -0.195 5.195 20 H 0.280 0.720 21 N -0.119 5.119 22 C -0.073 4.073 23 C -0.073 4.073 24 C -0.161 4.161 25 C -0.091 4.091 26 H 0.094 0.906 27 C -0.212 4.212 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.190 0.810 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.335 -7.605 -15.323 17.159 hybrid contribution -1.505 0.181 1.238 1.957 sum -2.839 -7.425 -14.085 16.173 Atomic orbital electron populations 1.22275 0.96749 1.01121 1.02852 1.21465 0.94231 0.84222 1.01733 1.48260 1.63994 1.12880 1.08011 1.19232 0.96578 0.92883 0.78404 1.21401 0.96417 1.32454 1.05445 0.92552 1.24924 0.96043 0.96293 0.96902 1.69918 1.24478 1.42820 1.16345 0.86629 0.83104 0.79876 0.78209 1.20336 1.21231 1.20365 1.20096 0.77956 0.86987 0.84519 1.90644 1.47445 1.15617 1.86974 1.19899 0.96621 0.96933 0.92018 0.89067 1.19501 0.92688 1.08093 1.01592 1.22007 0.98222 0.94784 0.92739 1.46190 1.09708 1.39107 1.24465 0.72015 1.76918 0.89881 1.23817 1.21316 1.22263 0.96252 0.94674 0.94094 1.20082 0.86805 1.01958 0.98476 1.21782 0.98088 0.97997 0.98225 1.21007 0.93178 0.96885 0.98006 0.90569 1.21991 0.99360 1.00431 0.99420 0.92783 0.90692 0.93505 0.91734 0.90656 0.94211 0.95228 0.92785 0.81034 0.90278 0.90132 0.91214 0.89272 0.92337 0.92453 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.04 37.16 0.37 -2.12 16 2 C 0.11 1.66 5.59 -4.04 -0.02 1.64 16 3 N -0.60 -12.12 2.20 -175.06 -0.39 -12.50 16 4 C 0.25 6.34 5.16 -5.20 -0.03 6.31 16 5 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 6 H 0.06 1.57 7.27 -52.48 -0.38 1.18 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.52 10.43 4.76 -10.99 -0.05 10.38 16 14 O -0.53 -13.26 14.50 5.56 0.08 -13.18 16 15 C -0.03 -0.49 2.15 -92.63 -0.20 -0.69 16 16 H 0.09 1.22 5.24 -51.93 -0.27 0.95 16 17 C -0.21 -3.30 4.74 -104.98 -0.50 -3.80 16 18 C 0.07 0.98 11.95 -17.37 -0.21 0.78 16 19 N -0.49 -6.63 7.37 30.35 0.22 -6.41 16 20 H 0.44 4.33 8.96 -182.43 -1.64 2.69 16 21 N -0.30 -4.78 12.68 33.75 0.43 -4.35 16 22 C 0.10 1.53 7.10 -82.34 -0.58 0.94 16 23 C -0.03 -0.45 6.31 -27.57 -0.17 -0.62 16 24 C -0.12 -1.68 5.13 -26.53 -0.14 -1.81 16 25 C -0.07 -0.93 2.44 -90.40 -0.22 -1.15 16 26 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 27 C -0.15 -1.92 8.21 37.16 0.31 -1.62 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.32 7.31 -51.93 -0.38 0.94 16 30 H 0.05 0.64 7.50 -51.93 -0.39 0.25 16 31 H 0.06 0.81 4.39 -51.93 -0.23 0.58 16 32 H 0.07 1.15 7.84 -51.93 -0.41 0.74 16 33 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 34 H 0.03 0.77 7.86 -51.93 -0.41 0.36 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 40 H 0.09 1.57 6.07 -51.93 -0.32 1.25 16 41 H 0.06 0.64 6.58 -51.93 -0.34 0.30 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 1.01 6.82 -51.93 -0.35 0.65 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -34.59 337.54 -8.30 -42.89 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.59 Total: 2.33 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -1.85 Total: -4.91 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 1.00 Total: -49.11 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.59 -8.30 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879097363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.359 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds