Wall clock time and date at job start Tue Mar 31 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46954 * 2 1 4 4 C 1.46501 * 119.99735 * 94.98675 * 3 2 1 5 5 C 1.50694 * 109.47373 * 269.99730 * 4 3 2 6 6 H 1.08010 * 119.99871 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00507 * 179.72343 * 5 4 3 8 8 N 1.31517 * 119.99473 * 0.28211 * 7 5 4 9 9 Si 1.86794 * 120.00136 * 180.27529 * 7 5 4 10 10 H 1.48499 * 109.47280 * 60.00732 * 9 7 5 11 11 H 1.48499 * 109.47005 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47264 * 300.00332 * 9 7 5 13 13 C 1.34770 * 120.00209 * 274.98434 * 3 2 1 14 14 O 1.21279 * 120.00281 * 174.40388 * 13 3 2 15 15 C 1.50699 * 119.99830 * 354.40397 * 13 3 2 16 16 H 1.09001 * 109.71838 * 20.35762 * 15 13 3 17 17 C 1.50882 * 109.71945 * 140.96245 * 15 13 3 18 18 C 1.34574 * 128.32966 * 283.11203 * 17 15 13 19 19 N 1.35193 * 107.61976 * 180.13292 * 18 17 15 20 20 H 0.97006 * 126.00473 * 179.97438 * 19 18 17 21 21 N 1.40311 * 107.99355 * 359.96598 * 19 18 17 22 22 C 1.30123 * 108.12312 * 359.95207 * 21 19 18 23 23 C 1.50953 * 128.28702 * 180.30469 * 22 21 19 24 24 C 1.53364 * 108.20729 * 163.17457 * 23 22 21 25 25 C 1.53031 * 109.74960 * 50.64779 * 24 23 22 26 26 H 1.09000 * 109.43009 * 48.34385 * 25 24 23 27 27 C 1.53000 * 109.43135 * 168.19504 * 25 24 23 28 28 H 1.09004 * 109.47054 * 183.58269 * 1 2 3 29 29 H 1.08995 * 109.47360 * 303.58630 * 1 2 3 30 30 H 1.09004 * 109.46915 * 63.58898 * 1 2 3 31 31 H 1.08994 * 109.47509 * 240.00053 * 2 1 3 32 32 H 1.09000 * 109.47164 * 119.99791 * 2 1 3 33 33 H 1.09005 * 109.46952 * 149.99701 * 4 3 2 34 34 H 1.09001 * 109.47341 * 30.00223 * 4 3 2 35 35 H 0.97000 * 119.99392 * 179.97438 * 8 7 5 36 36 H 1.08002 * 126.18801 * 0.10022 * 18 17 15 37 37 H 1.08998 * 109.71913 * 282.85511 * 23 22 21 38 38 H 1.09005 * 109.71411 * 43.49843 * 23 22 21 39 39 H 1.09003 * 109.42846 * 170.73296 * 24 23 22 40 40 H 1.09006 * 109.42453 * 290.62085 * 24 23 22 41 41 H 1.09000 * 109.46601 * 180.77378 * 27 25 24 42 42 H 1.08996 * 109.46992 * 300.77410 * 27 25 24 43 43 H 1.08995 * 109.46903 * 60.77743 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3664 2.0351 1.2640 5 6 1.1514 2.7311 1.8209 6 1 0.2134 2.6901 1.2869 7 6 1.2353 3.4149 3.0152 8 7 2.3774 3.4644 3.6656 9 14 -0.2728 4.2712 3.7092 10 1 -1.3458 3.2716 3.9431 11 1 0.0789 4.9299 4.9929 12 1 -0.7502 5.2932 2.7434 13 6 2.1473 2.0504 -1.1627 14 8 2.4537 3.2239 -1.1563 15 6 1.9108 1.3405 -2.4708 16 1 1.3145 0.4442 -2.3003 17 6 1.1879 2.2589 -3.4250 18 6 -0.1157 2.5931 -3.4354 19 7 -0.3130 3.4392 -4.4712 20 1 -1.1575 3.8443 -4.7238 21 7 0.9183 3.6286 -5.1167 22 6 1.8160 2.9245 -4.4909 23 6 3.2890 2.8015 -4.7973 24 6 3.9881 2.2182 -3.5632 25 6 3.2552 0.9566 -3.1017 26 1 3.0810 0.3048 -3.9578 27 6 4.1105 0.2203 -2.0686 28 1 -0.3633 -1.0257 0.0642 29 1 -0.3634 0.5685 0.8560 30 1 -0.3633 0.4571 -0.9204 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.1559 2.7662 1.0895 34 1 2.7150 1.2870 1.9761 35 1 2.4365 3.9459 4.5056 36 1 -0.8682 2.2474 -2.7421 37 1 3.4331 2.1376 -5.6497 38 1 3.7010 3.7851 -5.0228 39 1 5.0185 1.9672 -3.8150 40 1 3.9804 2.9552 -2.7600 41 1 3.5951 -0.6857 -1.7496 42 1 5.0696 -0.0447 -2.5134 43 1 4.2758 0.8668 -1.2067 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879097363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:03 Heat of formation + Delta-G solvation = 4.493867 kcal Electronic energy + Delta-G solvation = -24812.033353 eV Core-core repulsion = 21471.365012 eV Total energy + Delta-G solvation = -3340.668341 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.59753 -40.72901 -37.66174 -36.78373 -34.85838 -33.51272 -32.07049 -31.40605 -30.61738 -29.17919 -27.45689 -25.24478 -24.47147 -24.11225 -22.25176 -21.69322 -20.48734 -19.24490 -18.64659 -18.39445 -17.81450 -16.92037 -16.48938 -16.05578 -15.80274 -15.54390 -14.90186 -14.87968 -14.42704 -14.32134 -14.20128 -13.90032 -13.79462 -13.58072 -13.46758 -13.22508 -12.93746 -12.87509 -12.69878 -12.48739 -12.33388 -12.13973 -12.04615 -11.77108 -11.73196 -11.59754 -11.57801 -11.02774 -10.60137 -10.41999 -10.25949 -9.34830 -9.29143 -8.17979 -6.30692 0.95758 1.34240 1.38369 1.45077 1.69538 1.97137 2.07871 2.36516 2.62477 3.11001 3.46956 3.78655 3.90240 3.97130 4.05244 4.24591 4.28085 4.38150 4.53392 4.54614 4.60348 4.66091 4.68746 4.70707 4.90371 4.97171 5.01102 5.05552 5.08408 5.10630 5.13625 5.22804 5.27867 5.29750 5.45540 5.55423 5.61257 5.66654 5.71418 5.97301 6.14028 6.46248 6.73823 6.77484 6.96771 7.34846 7.68570 8.88388 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016816 B = 0.005633 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.661871 B = 4969.249069 C = 5508.697935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.100 3.900 3 N -0.601 5.601 4 C 0.265 3.735 5 C -0.528 4.528 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.282 1.282 13 C 0.516 3.484 14 O -0.591 6.591 15 C -0.019 4.019 16 H 0.118 0.882 17 C -0.236 4.236 18 C 0.070 3.930 19 N -0.478 5.478 20 H 0.451 0.549 21 N -0.323 5.323 22 C 0.083 3.917 23 C -0.033 4.033 24 C -0.121 4.121 25 C -0.070 4.070 26 H 0.113 0.887 27 C -0.152 4.152 28 H 0.091 0.909 29 H 0.037 0.963 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.075 0.925 33 H -0.009 1.009 34 H 0.020 0.980 35 H 0.265 0.735 36 H 0.196 0.804 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.856 -11.358 -16.206 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.022 4.022 3 N -0.332 5.332 4 C 0.143 3.857 5 C -0.567 4.567 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.784 3.216 10 H -0.183 1.183 11 H -0.206 1.206 12 H -0.208 1.208 13 C 0.305 3.695 14 O -0.471 6.471 15 C -0.041 4.041 16 H 0.136 0.864 17 C -0.248 4.248 18 C -0.077 4.077 19 N -0.187 5.187 20 H 0.297 0.703 21 N -0.146 5.146 22 C -0.086 4.086 23 C -0.072 4.072 24 C -0.159 4.159 25 C -0.088 4.088 26 H 0.131 0.869 27 C -0.209 4.209 28 H 0.110 0.890 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.093 0.907 33 H 0.009 0.991 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.213 0.787 37 H 0.130 0.870 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.852 -9.903 -16.972 19.855 hybrid contribution -1.019 0.898 1.729 2.199 sum -3.870 -9.004 -15.242 18.122 Atomic orbital electron populations 1.22221 0.95578 1.02977 1.01703 1.21818 0.95172 0.81560 1.03695 1.48236 1.64002 1.14675 1.06337 1.18656 0.94548 0.91749 0.80716 1.21683 0.96820 1.32582 1.05569 0.92830 1.25807 0.99051 0.97040 0.97406 1.70046 1.26542 1.43728 1.16785 0.85593 0.79807 0.78835 0.77323 1.18315 1.20566 1.20833 1.21031 0.76141 0.86427 0.85865 1.90614 1.49951 1.18611 1.87909 1.19887 0.98538 0.96949 0.88741 0.86420 1.19734 0.93458 1.09415 1.02167 1.22448 0.98511 0.94055 0.92675 1.46242 1.09885 1.38627 1.23988 0.70309 1.76861 0.90782 1.24534 1.22424 1.22723 0.97352 0.94340 0.94145 1.20193 0.85253 1.02556 0.99191 1.21741 0.99965 0.97259 0.96922 1.21116 0.91672 0.96994 0.99047 0.86907 1.21983 1.00900 1.00143 0.97904 0.89009 0.94396 0.92439 0.87779 0.90687 0.99122 0.96187 0.92664 0.78723 0.87042 0.90556 0.88650 0.94132 0.90387 0.90146 0.95774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 10.04 71.98 0.72 -3.70 16 2 C 0.10 2.90 5.59 86.38 0.48 3.38 16 3 N -0.60 -24.70 2.20 -826.17 -1.82 -26.52 16 4 C 0.26 14.23 5.16 85.63 0.44 14.67 16 5 C -0.53 -30.34 9.11 25.60 0.23 -30.11 16 6 H 0.05 3.04 7.27 -2.91 -0.02 3.02 16 7 C 0.01 0.31 5.46 84.66 0.46 0.77 16 8 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 9 Si 0.96 45.52 29.54 68.60 2.03 47.54 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 13 C 0.52 21.09 4.76 87.66 0.42 21.51 16 14 O -0.59 -31.14 14.50 -3.03 -0.04 -31.18 16 15 C -0.02 -0.54 2.15 -12.10 -0.03 -0.57 16 16 H 0.12 2.69 5.24 -2.39 -0.01 2.67 16 17 C -0.24 -7.17 4.74 -20.10 -0.10 -7.26 16 18 C 0.07 1.89 11.95 83.34 1.00 2.88 16 19 N -0.48 -12.33 7.37 -57.88 -0.43 -12.75 16 20 H 0.45 8.24 8.96 -213.18 -1.91 6.33 16 21 N -0.32 -10.07 12.68 -47.13 -0.60 -10.67 16 22 C 0.08 2.53 7.10 43.44 0.31 2.84 16 23 C -0.03 -0.82 6.31 30.05 0.19 -0.63 16 24 C -0.12 -3.18 5.13 30.73 0.16 -3.02 16 25 C -0.07 -1.63 2.44 -10.65 -0.03 -1.65 16 26 H 0.11 1.92 8.10 -2.39 -0.02 1.91 16 27 C -0.15 -3.43 8.21 71.98 0.59 -2.84 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.04 1.29 7.31 -2.39 -0.02 1.27 16 30 H 0.06 1.39 7.50 -2.38 -0.02 1.37 16 31 H 0.10 2.21 4.39 -2.39 -0.01 2.20 16 32 H 0.07 2.19 7.84 -2.39 -0.02 2.17 16 33 H -0.01 -0.59 7.51 -2.38 -0.02 -0.60 16 34 H 0.02 1.10 7.86 -2.39 -0.02 1.08 16 35 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.20 4.15 8.06 -2.91 -0.02 4.13 16 37 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.10 1.95 8.09 -2.39 -0.02 1.93 16 40 H 0.04 1.48 6.07 -2.38 -0.01 1.47 16 41 H 0.08 1.42 6.58 -2.39 -0.02 1.40 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.02 0.73 6.82 -2.39 -0.02 0.72 16 Total: -1.00 -80.50 337.54 3.40 -77.10 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -0.88 Total: 16.88 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 4.86 Total: -3.71 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -2.56 Total: -106.64 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.04 Total: -31.18 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -80.50 3.40 -77.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879097363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.598 kcal (2) G-P(sol) polarization free energy of solvation -80.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds