Wall clock time and date at job start Tue Mar 31 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46924 * 2 1 4 4 C 1.46506 * 119.99735 * 264.42154 * 3 2 1 5 5 C 1.50701 * 109.46854 * 270.00048 * 4 3 2 6 6 H 1.08003 * 120.00332 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99639 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99761 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00209 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47205 * 90.00107 * 9 7 5 11 11 H 1.48505 * 109.47499 * 209.99965 * 9 7 5 12 12 H 1.48497 * 109.47325 * 330.00307 * 9 7 5 13 13 C 1.34775 * 120.00695 * 84.41812 * 3 2 1 14 14 O 1.21546 * 120.00294 * 185.89009 * 13 3 2 15 15 C 1.47833 * 119.99335 * 5.89379 * 13 3 2 16 16 C 1.39965 * 120.94246 * 53.56535 * 15 13 3 17 17 N 1.32139 * 118.92150 * 179.77326 * 16 15 13 18 18 C 1.31882 * 120.96436 * 0.50013 * 17 16 15 19 19 C 1.50704 * 118.94914 * 179.76245 * 18 17 16 20 20 C 1.53005 * 109.46829 * 299.73005 * 19 18 17 21 21 C 1.53002 * 109.47173 * 59.72722 * 19 18 17 22 22 N 1.31850 * 122.09735 * 359.47792 * 18 17 16 23 23 C 1.32160 * 120.97007 * 0.26232 * 22 18 17 24 24 C 1.50696 * 120.53676 * 179.97438 * 23 22 18 25 25 H 1.09000 * 109.47180 * 300.00368 * 1 2 3 26 26 H 1.09001 * 109.47155 * 60.00762 * 1 2 3 27 27 H 1.09001 * 109.47002 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47583 * 239.99857 * 2 1 3 29 29 H 1.09001 * 109.47155 * 119.99238 * 2 1 3 30 30 H 1.09005 * 109.47120 * 29.99859 * 4 3 2 31 31 H 1.08997 * 109.47212 * 149.99997 * 4 3 2 32 32 H 0.96997 * 120.00106 * 180.02562 * 8 7 5 33 33 H 1.07994 * 120.53791 * 0.02562 * 16 15 13 34 34 H 1.08998 * 109.47057 * 179.73109 * 19 18 17 35 35 H 1.09001 * 109.47131 * 299.99669 * 20 19 18 36 36 H 1.09000 * 109.46794 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.47216 * 60.00201 * 20 19 18 38 38 H 1.09000 * 109.47039 * 299.99817 * 21 19 18 39 39 H 1.08997 * 109.46798 * 60.00266 * 21 19 18 40 40 H 1.09000 * 109.46920 * 179.97438 * 21 19 18 41 41 H 1.09007 * 109.46880 * 85.81787 * 24 23 22 42 42 H 1.09005 * 109.46854 * 205.81079 * 24 23 22 43 43 H 1.09001 * 109.47316 * 325.81445 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3787 2.0307 -1.2628 5 6 3.8355 1.7820 -1.5576 6 1 4.4333 1.1989 -0.8727 7 6 4.4053 2.2990 -2.7018 8 7 5.6768 2.0824 -2.9589 9 14 3.3713 3.3069 -3.8869 10 1 3.4367 4.7405 -3.5049 11 1 3.8937 3.1379 -5.2667 12 1 1.9615 2.8436 -3.8311 13 6 2.1359 2.0545 1.1616 14 8 2.4378 3.2319 1.1537 15 6 1.8978 1.3610 2.4452 16 6 2.5784 0.1797 2.7620 17 7 2.3381 -0.4047 3.9225 18 6 1.4656 0.1040 4.7706 19 6 1.2228 -0.6029 6.0793 20 6 0.7064 -2.0172 5.8067 21 6 2.5320 -0.6810 6.8673 22 7 0.8030 1.2143 4.5125 23 6 0.9852 1.8668 3.3777 24 6 0.2223 3.1347 3.0924 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.7698 1.6211 -2.0688 31 1 2.2021 3.1033 -1.1831 32 1 6.0777 2.4463 -3.7636 33 1 3.2913 -0.2451 2.0709 34 1 0.4825 -0.0511 6.6584 35 1 -0.2262 -1.9615 5.2454 36 1 0.5304 -2.5283 6.7533 37 1 1.4468 -2.5690 5.2276 38 1 3.2723 -1.2329 6.2881 39 1 2.8998 0.3265 7.0614 40 1 2.3563 -1.1919 7.8139 41 1 0.7525 3.9830 3.5255 42 1 0.1360 3.2721 2.0145 43 1 -0.7733 3.0661 3.5309 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879097441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:31 Heat of formation + Delta-G solvation = 3.286393 kcal Electronic energy + Delta-G solvation = -23838.416351 eV Core-core repulsion = 20497.695650 eV Total energy + Delta-G solvation = -3340.720701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.37684 -39.07274 -35.88662 -35.59591 -34.20501 -32.85944 -31.78390 -30.44308 -28.94186 -27.54067 -27.33609 -25.17030 -23.57275 -22.89761 -22.55589 -20.54066 -19.01315 -18.02947 -16.96411 -16.75508 -16.27492 -15.91376 -15.06770 -14.57788 -14.36836 -14.27901 -14.07350 -13.59548 -13.48036 -13.36821 -13.07643 -12.76541 -12.56653 -12.40890 -12.29411 -12.26371 -12.08128 -11.89080 -11.58894 -11.37176 -11.20459 -11.11038 -11.03892 -10.87128 -10.59683 -10.41185 -10.22510 -9.63202 -9.40386 -9.26425 -9.14030 -8.64982 -7.87123 -6.14991 -4.14995 0.65952 1.03835 3.08247 3.24898 3.30743 3.32816 3.53697 3.67649 3.77691 4.02793 4.33991 4.43008 4.71202 4.82431 4.88681 4.94880 5.04520 5.18420 5.19382 5.38450 5.43484 5.46797 5.48794 5.58803 5.59596 5.61864 5.67988 5.73662 5.84001 5.89795 5.98310 6.03531 6.04908 6.16538 6.28950 6.37086 6.59497 6.83524 6.95244 7.18791 7.52266 8.03308 8.05923 8.37521 8.71386 8.87472 9.44415 10.98088 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.004124 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.014687 B = 6788.468647 C = 6946.593242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.100 3.900 3 N -0.582 5.582 4 C 0.216 3.784 5 C -0.534 4.534 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.564 3.436 14 O -0.525 6.525 15 C -0.224 4.224 16 C 0.183 3.817 17 N -0.517 5.517 18 C 0.331 3.669 19 C -0.026 4.026 20 C -0.140 4.140 21 C -0.141 4.141 22 N -0.521 5.521 23 C 0.217 3.783 24 C -0.105 4.105 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.177 0.823 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.373 -7.032 14.513 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.313 5.313 4 C 0.096 3.904 5 C -0.572 4.572 6 H 0.093 0.907 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.702 3.298 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.348 3.652 14 O -0.402 6.402 15 C -0.232 4.232 16 C 0.017 3.983 17 N -0.231 5.231 18 C 0.063 3.937 19 C -0.046 4.046 20 C -0.198 4.198 21 C -0.199 4.199 22 N -0.236 5.236 23 C 0.070 3.930 24 C -0.163 4.163 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.194 0.806 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.111 0.889 42 H 0.102 0.898 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.221 -6.815 15.186 20.649 hybrid contribution -0.063 0.898 -1.629 1.861 sum -12.283 -5.917 13.557 19.227 Atomic orbital electron populations 1.22202 0.96548 1.01729 1.02104 1.21634 0.93645 0.83768 1.03366 1.47893 1.62702 1.13319 1.07383 1.19741 0.96788 0.94155 0.79725 1.21302 0.93218 1.34858 1.07844 0.90671 1.24841 0.94843 0.95581 0.97574 1.69889 1.11389 1.45294 1.26704 0.86859 0.80895 0.81451 0.80551 1.19831 1.21006 1.19016 1.17655 0.78304 0.86412 0.82796 1.90774 1.47554 1.15140 1.86736 1.21840 1.02688 0.99378 0.99259 1.23500 0.93832 0.88761 0.92189 1.68189 1.17415 1.34092 1.03378 1.23252 0.86902 0.88131 0.95369 1.19971 0.99347 0.96004 0.89312 1.21790 1.01335 0.94572 1.02124 1.21798 0.96224 1.02260 0.99641 1.68122 1.26585 1.08950 1.19918 1.21772 0.90051 0.94256 0.86901 1.20821 0.99479 0.92354 1.03596 0.93362 0.91950 0.91871 0.89042 0.91528 0.94909 0.94231 0.92451 0.80612 0.88713 0.92804 0.91684 0.91278 0.91264 0.92775 0.91658 0.88938 0.89809 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.20 37.16 0.38 -1.80 16 2 C 0.10 1.54 5.90 -4.04 -0.02 1.52 16 3 N -0.58 -11.54 2.47 -176.18 -0.43 -11.98 16 4 C 0.22 5.07 4.25 -5.19 -0.02 5.04 16 5 C -0.53 -14.80 9.94 -34.44 -0.34 -15.14 16 6 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 9 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 13 C 0.56 11.35 6.14 -12.34 -0.08 11.27 16 14 O -0.53 -12.44 15.62 5.33 0.08 -12.36 16 15 C -0.22 -3.76 4.89 -104.69 -0.51 -4.27 16 16 C 0.18 2.82 8.93 -16.77 -0.15 2.67 16 17 N -0.52 -7.48 9.77 -10.39 -0.10 -7.58 16 18 C 0.33 4.53 6.34 -157.07 -1.00 3.54 16 19 C -0.03 -0.27 3.25 -91.77 -0.30 -0.57 16 20 C -0.14 -1.23 9.09 37.16 0.34 -0.89 16 21 C -0.14 -1.31 9.08 37.16 0.34 -0.97 16 22 N -0.52 -7.68 10.22 -6.67 -0.07 -7.75 16 23 C 0.22 3.35 6.86 -81.82 -0.56 2.79 16 24 C -0.11 -1.42 9.53 36.00 0.34 -1.08 16 25 H 0.05 0.64 8.02 -51.93 -0.42 0.22 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 29 H 0.07 0.94 4.46 -51.93 -0.23 0.71 16 30 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 31 H 0.04 0.99 6.78 -51.93 -0.35 0.64 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.18 2.54 7.30 -52.49 -0.38 2.16 16 34 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.66 8.01 -51.93 -0.42 0.24 16 38 H 0.07 0.70 8.00 -51.93 -0.42 0.28 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 42 H 0.08 1.22 6.73 -51.93 -0.35 0.87 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -32.52 354.18 -7.50 -40.02 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.74 Total: 0.04 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -1.68 Total: 4.14 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.17 Total: -53.52 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.52 -7.50 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879097441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.311 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds