Wall clock time and date at job start Tue Mar 31 2020 07:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46903 * 111.00268 * 2 1 4 4 C 1.46899 * 111.00524 * 123.95522 * 2 1 3 5 5 C 1.53002 * 109.47026 * 66.04005 * 4 2 1 6 6 C 1.53004 * 109.47185 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47171 * 180.02562 * 6 5 4 8 8 C 1.50692 * 109.46934 * 179.97438 * 7 6 5 9 9 O 1.21272 * 120.00154 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99748 * 179.97438 * 8 7 6 11 11 C 1.39268 * 119.99910 * 185.54058 * 10 8 7 12 12 C 1.39668 * 119.57577 * 174.99974 * 11 10 8 13 13 C 1.38656 * 119.49634 * 180.02562 * 12 11 10 14 14 C 1.38343 * 118.66953 * 359.74075 * 13 12 11 15 15 C 1.40578 * 119.12908 * 0.50237 * 14 13 12 16 16 C 1.41340 * 119.78487 * 179.76607 * 15 14 13 17 17 H 1.07997 * 120.00636 * 5.87431 * 16 15 14 18 18 C 1.40033 * 119.99643 * 185.86705 * 16 15 14 19 19 N 1.30742 * 120.00085 * 5.94213 * 18 16 15 20 20 Si 1.86795 * 119.99882 * 185.93695 * 18 16 15 21 21 H 1.48505 * 109.47294 * 265.00759 * 20 18 16 22 22 H 1.48498 * 109.47134 * 25.00704 * 20 18 16 23 23 H 1.48496 * 109.47129 * 145.00812 * 20 18 16 24 24 N 1.31910 * 119.57619 * 355.01381 * 11 10 8 25 25 H 1.09007 * 109.46934 * 296.04587 * 1 2 3 26 26 H 1.08994 * 109.47332 * 56.04239 * 1 2 3 27 27 H 1.08998 * 109.47402 * 176.04928 * 1 2 3 28 28 H 1.08999 * 109.47404 * 183.95874 * 3 2 1 29 29 H 1.08999 * 109.46763 * 303.95958 * 3 2 1 30 30 H 1.08996 * 109.47123 * 63.95528 * 3 2 1 31 31 H 1.09005 * 109.46932 * 306.04758 * 4 2 1 32 32 H 1.08996 * 109.47639 * 186.04602 * 4 2 1 33 33 H 1.09005 * 109.46650 * 60.00580 * 5 4 2 34 34 H 1.08996 * 109.47399 * 300.00744 * 5 4 2 35 35 H 1.09000 * 109.47171 * 59.99827 * 6 5 4 36 36 H 1.09000 * 109.46691 * 300.00217 * 6 5 4 37 37 H 1.08996 * 109.47100 * 59.99857 * 7 6 5 38 38 H 1.09004 * 109.46899 * 299.99975 * 7 6 5 39 39 H 0.96998 * 120.00585 * 5.53984 * 10 8 7 40 40 H 1.08004 * 120.25305 * 359.97438 * 12 11 10 41 41 H 1.08005 * 120.66414 * 180.02562 * 13 12 11 42 42 H 1.08009 * 120.43515 * 180.24119 * 14 13 12 43 43 H 0.96999 * 120.00066 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6314 -2.2426 0.9703 6 6 2.1793 -3.0404 2.1554 7 6 1.8158 -4.5171 1.9879 8 6 2.3560 -5.3028 3.1548 9 8 2.9707 -4.7374 4.0340 10 7 2.1550 -6.6339 3.2217 11 6 2.5520 -7.3420 4.3533 12 6 2.2461 -8.7006 4.4589 13 6 2.6417 -9.4039 5.5865 14 6 3.3372 -8.7335 6.5768 15 6 3.6103 -7.3641 6.4139 16 6 4.3156 -6.6644 7.4192 17 1 4.7254 -7.1992 8.2632 18 6 4.4832 -5.2776 7.3207 19 7 3.8903 -4.6139 6.3629 20 14 5.5538 -4.3760 8.5577 21 1 4.7031 -3.8391 9.6501 22 1 6.5533 -5.3162 9.1253 23 1 6.2560 -3.2561 7.8812 24 7 3.2120 -6.7208 5.3118 25 1 -0.3633 0.4513 0.9234 26 1 -0.3634 0.5740 -0.8523 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0709 29 1 1.5897 1.9163 -0.8524 30 1 1.7045 1.8723 0.9233 31 1 1.5612 -0.3873 2.0628 32 1 3.0797 -0.6611 1.1755 33 1 2.0658 -2.6213 0.0450 34 1 0.5472 -2.3475 0.9323 35 1 1.7448 -2.6615 3.0805 36 1 3.2636 -2.9355 2.1937 37 1 2.2507 -4.8956 1.0629 38 1 0.7315 -4.6222 1.9493 39 1 1.7338 -7.0987 2.4819 40 1 1.7047 -9.1995 3.6687 41 1 2.4154 -10.4551 5.6876 42 1 3.6625 -9.2543 7.4653 43 1 4.0061 -3.6532 6.2949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882475114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:37 Heat of formation + Delta-G solvation = 11.688227 kcal Electronic energy + Delta-G solvation = -22824.916165 eV Core-core repulsion = 19484.559795 eV Total energy + Delta-G solvation = -3340.356370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.27166 -37.99186 -37.41338 -34.39564 -33.86094 -32.95687 -30.34054 -29.88453 -28.66400 -27.79896 -25.69740 -24.99068 -22.52709 -21.50800 -20.97204 -20.65830 -19.13574 -17.66786 -16.10790 -16.00735 -15.99814 -15.49493 -15.09154 -14.80845 -14.66525 -14.42324 -13.94766 -13.60012 -13.22896 -12.82469 -12.79241 -12.58131 -12.38355 -12.09753 -11.92687 -11.88533 -11.75556 -11.20756 -11.10291 -11.02455 -10.92391 -10.87387 -10.63414 -10.46053 -10.38078 -9.94612 -9.59220 -8.98214 -8.87926 -8.56704 -7.95404 -7.17346 -6.92697 -6.16437 -4.36662 2.80668 3.09383 3.18249 3.21121 3.28335 3.71027 3.81733 3.98631 4.07844 4.80710 4.93120 4.93518 4.99681 5.15286 5.19811 5.27886 5.35912 5.46911 5.53389 5.56558 5.62859 5.66096 5.83333 5.87811 5.94605 6.03116 6.07045 6.15777 6.40309 6.51707 6.56166 6.73143 6.82196 6.84144 6.86862 6.88045 7.26364 7.58563 7.66113 7.83588 8.11045 8.23257 8.51364 8.77830 9.07072 9.33832 10.27038 10.49544 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.003781 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.502959 B = 7404.453000 C = 9110.935364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.550 5.550 3 C 0.024 3.976 4 C 0.053 3.947 5 C -0.114 4.114 6 C -0.101 4.101 7 C -0.136 4.136 8 C 0.467 3.533 9 O -0.413 6.413 10 N -0.670 5.670 11 C 0.372 3.628 12 C -0.358 4.358 13 C -0.037 4.037 14 C -0.307 4.307 15 C 0.272 3.728 16 C -0.428 4.428 17 H 0.082 0.918 18 C 0.061 3.939 19 N -0.659 5.659 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.263 1.263 23 H -0.277 1.277 24 N -0.476 5.476 25 H 0.024 0.976 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.398 0.602 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.696 7.851 -11.880 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.274 5.274 3 C -0.125 4.125 4 C -0.075 4.075 5 C -0.152 4.152 6 C -0.140 4.140 7 C -0.177 4.177 8 C 0.250 3.750 9 O -0.277 6.277 10 N -0.317 5.317 11 C 0.133 3.867 12 C -0.384 4.384 13 C -0.061 4.061 14 C -0.330 4.330 15 C 0.147 3.853 16 C -0.458 4.458 17 H 0.100 0.900 18 C -0.169 4.169 19 N -0.277 5.277 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.187 1.187 23 H -0.203 1.203 24 N -0.195 5.195 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.231 0.769 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.917 9.275 -11.819 15.808 hybrid contribution -0.356 -0.464 0.877 1.054 sum -5.273 8.811 -10.942 15.005 Atomic orbital electron populations 1.22438 0.87592 1.02500 1.00232 1.62012 1.07978 1.13676 1.43726 1.22377 1.00853 0.88933 1.00308 1.22193 1.00362 0.94033 0.90903 1.21610 1.00868 0.93628 0.99085 1.21258 1.02103 0.92639 0.97958 1.21654 1.01863 0.96213 0.97937 1.20838 0.82871 0.82536 0.88803 1.91113 1.32984 1.67673 1.35893 1.43504 1.61512 1.08304 1.18372 1.18641 0.92975 0.87393 0.87671 1.20508 1.20337 0.94417 1.03098 1.20567 0.95283 0.97060 0.93183 1.21623 1.12747 0.97171 1.01428 1.18389 0.89108 0.88093 0.89681 1.19562 1.28945 0.92074 1.05247 0.89980 1.26138 0.96230 0.98438 0.96048 1.70253 1.27319 1.08033 1.22131 0.86514 0.80755 0.79677 0.81081 1.19786 1.18682 1.20256 1.68653 1.15240 1.34752 1.00820 0.95697 0.91685 0.90932 0.91319 0.91549 0.95720 0.94638 0.90605 0.91259 0.92143 0.91203 0.91100 0.89957 0.90009 0.76872 0.89129 0.88672 0.88601 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.32 60.06 0.56 0.74 16 2 N -0.55 -5.64 5.02 -251.26 -1.26 -6.90 16 3 C 0.02 0.20 9.57 60.07 0.57 0.78 16 4 C 0.05 0.58 4.96 -3.82 -0.02 0.56 16 5 C -0.11 -1.24 5.14 -26.73 -0.14 -1.37 16 6 C -0.10 -1.37 4.50 -26.73 -0.12 -1.49 16 7 C -0.14 -1.85 5.70 -27.89 -0.16 -2.01 16 8 C 0.47 9.29 7.79 -10.99 -0.09 9.21 16 9 O -0.41 -10.28 11.87 5.56 0.07 -10.21 16 10 N -0.67 -13.25 5.38 -11.40 -0.06 -13.32 16 11 C 0.37 9.21 7.43 -154.97 -1.15 8.06 16 12 C -0.36 -8.17 9.95 -38.89 -0.39 -8.56 16 13 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 14 C -0.31 -7.86 9.83 -38.66 -0.38 -8.24 16 15 C 0.27 7.78 6.53 -85.00 -0.55 7.22 16 16 C -0.43 -11.92 9.13 -37.73 -0.34 -12.27 16 17 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 18 C 0.06 1.61 5.48 -17.34 -0.10 1.52 16 19 N -0.66 -18.37 9.18 55.55 0.51 -17.86 16 20 Si 0.90 19.44 29.56 -169.99 -5.03 14.41 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 N -0.48 -13.54 5.77 -10.26 -0.06 -13.60 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 27 H 0.07 0.62 6.47 -51.93 -0.34 0.28 16 28 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 29 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 32 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.61 6.55 -51.93 -0.34 0.27 16 35 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 36 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.40 6.02 8.70 -40.82 -0.36 5.67 16 40 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 41 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 42 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 43 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 LS Contribution 353.09 15.07 5.32 5.32 Total: -1.00 -33.02 353.09 -10.12 -43.14 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.91 Total: 6.13 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -2.70 Total: -7.11 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.87 Total: -51.68 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.07 Total: -10.21 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.02 -10.12 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.826 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds