Wall clock time and date at job start Tue Mar 31 2020 07:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46903 * 111.00268 * 2 1 4 4 C 1.46899 * 111.00524 * 123.95522 * 2 1 3 5 5 C 1.53002 * 109.47026 * 66.04005 * 4 2 1 6 6 C 1.53004 * 109.47185 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47171 * 180.02562 * 6 5 4 8 8 C 1.50692 * 109.46934 * 179.97438 * 7 6 5 9 9 O 1.21272 * 120.00154 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99748 * 179.97438 * 8 7 6 11 11 C 1.39268 * 119.99910 * 185.54058 * 10 8 7 12 12 C 1.39668 * 119.57577 * 174.99974 * 11 10 8 13 13 C 1.38656 * 119.49634 * 180.02562 * 12 11 10 14 14 C 1.38343 * 118.66953 * 359.74075 * 13 12 11 15 15 C 1.40578 * 119.12908 * 0.50237 * 14 13 12 16 16 C 1.41340 * 119.78487 * 179.76607 * 15 14 13 17 17 H 1.07997 * 120.00636 * 5.87431 * 16 15 14 18 18 C 1.40033 * 119.99643 * 185.86705 * 16 15 14 19 19 N 1.30742 * 120.00085 * 5.94213 * 18 16 15 20 20 Si 1.86795 * 119.99882 * 185.93695 * 18 16 15 21 21 H 1.48505 * 109.47294 * 265.00759 * 20 18 16 22 22 H 1.48498 * 109.47134 * 25.00704 * 20 18 16 23 23 H 1.48496 * 109.47129 * 145.00812 * 20 18 16 24 24 N 1.31910 * 119.57619 * 355.01381 * 11 10 8 25 25 H 1.09007 * 109.46934 * 296.04587 * 1 2 3 26 26 H 1.08994 * 109.47332 * 56.04239 * 1 2 3 27 27 H 1.08998 * 109.47402 * 176.04928 * 1 2 3 28 28 H 1.08999 * 109.47404 * 183.95874 * 3 2 1 29 29 H 1.08999 * 109.46763 * 303.95958 * 3 2 1 30 30 H 1.08996 * 109.47123 * 63.95528 * 3 2 1 31 31 H 1.09005 * 109.46932 * 306.04758 * 4 2 1 32 32 H 1.08996 * 109.47639 * 186.04602 * 4 2 1 33 33 H 1.09005 * 109.46650 * 60.00580 * 5 4 2 34 34 H 1.08996 * 109.47399 * 300.00744 * 5 4 2 35 35 H 1.09000 * 109.47171 * 59.99827 * 6 5 4 36 36 H 1.09000 * 109.46691 * 300.00217 * 6 5 4 37 37 H 1.08996 * 109.47100 * 59.99857 * 7 6 5 38 38 H 1.09004 * 109.46899 * 299.99975 * 7 6 5 39 39 H 0.96998 * 120.00585 * 5.53984 * 10 8 7 40 40 H 1.08004 * 120.25305 * 359.97438 * 12 11 10 41 41 H 1.08005 * 120.66414 * 180.02562 * 13 12 11 42 42 H 1.08009 * 120.43515 * 180.24119 * 14 13 12 43 43 H 0.96999 * 120.00066 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6314 -2.2426 0.9703 6 6 2.1793 -3.0404 2.1554 7 6 1.8158 -4.5171 1.9879 8 6 2.3560 -5.3028 3.1548 9 8 2.9707 -4.7374 4.0340 10 7 2.1550 -6.6339 3.2217 11 6 2.5520 -7.3420 4.3533 12 6 2.2461 -8.7006 4.4589 13 6 2.6417 -9.4039 5.5865 14 6 3.3372 -8.7335 6.5768 15 6 3.6103 -7.3641 6.4139 16 6 4.3156 -6.6644 7.4192 17 1 4.7254 -7.1992 8.2632 18 6 4.4832 -5.2776 7.3207 19 7 3.8903 -4.6139 6.3629 20 14 5.5538 -4.3760 8.5577 21 1 4.7031 -3.8391 9.6501 22 1 6.5533 -5.3162 9.1253 23 1 6.2560 -3.2561 7.8812 24 7 3.2120 -6.7208 5.3118 25 1 -0.3633 0.4513 0.9234 26 1 -0.3634 0.5740 -0.8523 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0709 29 1 1.5897 1.9163 -0.8524 30 1 1.7045 1.8723 0.9233 31 1 1.5612 -0.3873 2.0628 32 1 3.0797 -0.6611 1.1755 33 1 2.0658 -2.6213 0.0450 34 1 0.5472 -2.3475 0.9323 35 1 1.7448 -2.6615 3.0805 36 1 3.2636 -2.9355 2.1937 37 1 2.2507 -4.8956 1.0629 38 1 0.7315 -4.6222 1.9493 39 1 1.7338 -7.0987 2.4819 40 1 1.7047 -9.1995 3.6687 41 1 2.4154 -10.4551 5.6876 42 1 3.6625 -9.2543 7.4653 43 1 4.0061 -3.6532 6.2949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882475114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:36 Heat of formation + Delta-G solvation = -9.671109 kcal Electronic energy + Delta-G solvation = -22825.842376 eV Core-core repulsion = 19484.559795 eV Total energy + Delta-G solvation = -3341.282580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.94452 -39.37795 -38.63508 -35.97830 -35.19325 -34.79983 -32.23953 -31.36549 -30.13358 -28.48040 -27.52311 -26.15605 -23.95223 -23.19599 -22.40441 -21.63605 -20.73694 -19.52257 -17.93151 -17.49112 -16.99854 -16.52084 -16.28792 -16.24482 -16.16339 -15.68813 -15.48363 -15.16012 -14.82974 -14.46430 -14.16294 -13.75481 -13.44906 -13.37086 -13.20117 -12.92937 -12.79662 -12.72028 -12.59745 -12.57471 -12.32221 -12.17314 -12.01854 -11.84936 -11.79905 -11.43494 -11.37164 -10.84554 -10.55784 -9.90402 -9.34292 -9.06614 -8.79526 -8.09755 -6.40895 0.93018 1.25525 1.38466 1.50057 1.53349 2.21797 2.25704 2.41478 2.99161 3.02220 3.89714 3.92482 4.03242 4.07739 4.25729 4.33296 4.38493 4.45187 4.51144 4.55934 4.69412 4.73637 4.75006 4.79371 4.83639 4.93481 4.96215 4.97927 4.99659 5.05121 5.09448 5.13147 5.30194 5.37308 5.49801 5.69265 5.88764 5.93218 6.05215 6.09525 6.16594 6.39094 6.77583 6.88372 7.09067 7.77546 8.35965 8.56054 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015243 B = 0.003781 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.502959 B = 7404.453000 C = 9110.935364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.559 5.559 3 C 0.022 3.978 4 C 0.053 3.947 5 C -0.099 4.099 6 C -0.095 4.095 7 C -0.118 4.118 8 C 0.456 3.544 9 O -0.469 6.469 10 N -0.658 5.658 11 C 0.348 3.652 12 C -0.347 4.347 13 C -0.035 4.035 14 C -0.332 4.332 15 C 0.237 3.763 16 C -0.469 4.469 17 H 0.085 0.915 18 C 0.014 3.986 19 N -0.694 5.694 20 Si 0.974 3.026 21 H -0.264 1.264 22 H -0.256 1.256 23 H -0.274 1.274 24 N -0.511 5.511 25 H 0.021 0.979 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.022 0.978 31 H 0.024 0.976 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.421 0.579 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.103 0.897 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 7.424 -13.755 17.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.283 5.283 3 C -0.126 4.126 4 C -0.075 4.075 5 C -0.137 4.137 6 C -0.133 4.133 7 C -0.158 4.158 8 C 0.241 3.759 9 O -0.336 6.336 10 N -0.308 5.308 11 C 0.109 3.891 12 C -0.372 4.372 13 C -0.060 4.060 14 C -0.355 4.355 15 C 0.112 3.888 16 C -0.500 4.500 17 H 0.103 0.897 18 C -0.211 4.211 19 N -0.313 5.313 20 Si 0.795 3.205 21 H -0.188 1.188 22 H -0.180 1.180 23 H -0.199 1.199 24 N -0.231 5.231 25 H 0.039 0.961 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.259 0.741 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.121 0.879 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.067 8.817 -13.749 17.424 hybrid contribution -0.108 -0.450 1.333 1.411 sum -6.175 8.367 -12.416 16.195 Atomic orbital electron populations 1.22503 0.86671 1.03061 1.00679 1.62041 1.08915 1.14396 1.42969 1.22434 1.01001 0.88350 1.00849 1.22137 0.99981 0.94421 0.90956 1.21466 1.01516 0.92927 0.97805 1.21163 1.00637 0.93325 0.98209 1.21623 1.03449 0.94713 0.96043 1.22006 0.81719 0.82532 0.89684 1.91113 1.35430 1.68634 1.38413 1.43533 1.60983 1.08556 1.17725 1.19211 0.92646 0.88820 0.88406 1.21006 1.18730 0.93728 1.03745 1.21050 0.93655 0.98992 0.92265 1.21805 1.14197 0.96596 1.02917 1.18887 0.89899 0.89675 0.90375 1.19877 1.30811 0.93269 1.06040 0.89730 1.26989 0.97375 0.98796 0.97956 1.70438 1.28886 1.07944 1.24020 0.85329 0.78770 0.78078 0.78337 1.18846 1.18002 1.19934 1.68621 1.16556 1.36190 1.01703 0.96050 0.90306 0.90477 0.91287 0.90079 0.95930 0.95727 0.91315 0.90267 0.90747 0.93726 0.93343 0.86683 0.87014 0.74121 0.84958 0.84567 0.87869 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.32 127.69 1.19 1.48 16 2 N -0.56 -10.63 5.02 -948.86 -4.76 -15.39 16 3 C 0.02 0.35 9.57 127.69 1.22 1.57 16 4 C 0.05 1.13 4.96 86.30 0.43 1.55 16 5 C -0.10 -1.98 5.14 30.60 0.16 -1.82 16 6 C -0.09 -2.54 4.50 30.60 0.14 -2.40 16 7 C -0.12 -2.97 5.70 29.85 0.17 -2.80 16 8 C 0.46 18.00 7.79 87.65 0.68 18.69 16 9 O -0.47 -24.24 11.87 -3.01 -0.04 -24.27 16 10 N -0.66 -25.20 5.38 -308.37 -1.66 -26.86 16 11 C 0.35 17.10 7.43 133.25 0.99 18.09 16 12 C -0.35 -15.02 9.95 22.72 0.23 -14.80 16 13 C -0.04 -1.57 10.15 22.39 0.23 -1.35 16 14 C -0.33 -17.20 9.83 22.87 0.22 -16.97 16 15 C 0.24 14.03 6.53 40.20 0.26 14.29 16 16 C -0.47 -27.31 9.13 23.47 0.21 -27.10 16 17 H 0.08 4.62 7.85 -2.91 -0.02 4.60 16 18 C 0.01 0.79 5.48 85.29 0.47 1.26 16 19 N -0.69 -40.62 9.18 21.84 0.20 -40.42 16 20 Si 0.97 41.47 29.56 68.60 2.03 43.50 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 N -0.51 -29.95 5.77 -186.36 -1.08 -31.02 16 25 H 0.02 0.35 8.14 -2.38 -0.02 0.33 16 26 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 27 H 0.08 1.12 6.47 -2.39 -0.02 1.10 16 28 H 0.07 1.08 8.12 -2.39 -0.02 1.07 16 29 H 0.08 1.05 8.12 -2.39 -0.02 1.03 16 30 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.02 0.57 8.12 -2.38 -0.02 0.55 16 32 H 0.07 1.53 8.06 -2.39 -0.02 1.51 16 33 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.07 1.30 6.55 -2.39 -0.02 1.29 16 35 H 0.04 1.41 8.10 -2.39 -0.02 1.39 16 36 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 37 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.42 11.49 8.70 -92.71 -0.81 10.69 16 40 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.14 4.84 8.06 -2.91 -0.02 4.81 16 42 H 0.10 4.99 8.06 -2.91 -0.02 4.96 16 43 H 0.27 14.91 8.29 -92.71 -0.77 14.14 16 Total: -1.00 -76.09 353.09 1.48 -74.61 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.19 Total: 30.15 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 6.60 Total: -10.29 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -7.30 Total: -113.70 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.04 Total: -24.27 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -76.09 1.48 -74.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.938 kcal (2) G-P(sol) polarization free energy of solvation -76.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds