Wall clock time and date at job start Tue Mar 31 2020 07:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40087 * 126.03964 * 2 1 4 4 C 1.30834 * 108.20871 * 180.22756 * 3 2 1 5 5 C 1.50701 * 125.90246 * 179.80983 * 4 3 2 6 6 C 1.52994 * 117.50121 * 163.70310 * 5 4 3 7 7 C 1.53003 * 117.49763 * 95.04228 * 5 4 3 8 8 C 1.39870 * 108.19969 * 359.77619 * 4 3 2 9 9 C 1.34944 * 126.03923 * 179.83470 * 2 1 3 10 10 C 1.50706 * 126.12597 * 0.03989 * 9 2 1 11 11 N 1.46496 * 109.47106 * 274.71381 * 10 9 2 12 12 C 1.34776 * 120.00006 * 179.97438 * 11 10 9 13 13 O 1.21285 * 119.99667 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00245 * 179.97438 * 12 11 10 15 15 C 1.53006 * 109.47050 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46886 * 180.02562 * 15 14 12 17 17 C 1.50696 * 109.46999 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00290 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00176 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99700 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00377 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46521 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47364 * 119.99777 * 21 19 17 24 24 H 1.48497 * 109.46870 * 239.99844 * 21 19 17 25 25 H 1.08994 * 109.47551 * 270.16478 * 1 2 3 26 26 H 1.09005 * 109.47153 * 30.16267 * 1 2 3 27 27 H 1.09004 * 109.47124 * 150.15655 * 1 2 3 28 28 H 1.09003 * 115.54965 * 309.37823 * 5 4 3 29 29 H 1.09003 * 117.49704 * 0.02562 * 6 5 4 30 30 H 1.08994 * 117.49902 * 145.02057 * 6 5 4 31 31 H 1.08993 * 117.49814 * 214.98223 * 7 5 4 32 32 H 1.09001 * 117.49702 * 359.97438 * 7 5 4 33 33 H 1.08006 * 126.03715 * 179.97438 * 8 4 3 34 34 H 1.09001 * 109.46953 * 34.71120 * 10 9 2 35 35 H 1.09000 * 109.47318 * 154.70717 * 10 9 2 36 36 H 0.96998 * 120.00192 * 0.02562 * 11 10 9 37 37 H 1.08998 * 109.47789 * 300.00397 * 14 12 11 38 38 H 1.09001 * 109.47138 * 60.00989 * 14 12 11 39 39 H 1.08992 * 109.47559 * 300.00076 * 15 14 12 40 40 H 1.08996 * 109.47261 * 60.00612 * 15 14 12 41 41 H 1.09001 * 109.47600 * 300.00455 * 16 15 14 42 42 H 1.09004 * 109.47006 * 60.00233 * 16 15 14 43 43 H 0.96999 * 120.00022 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0049 5 6 4.7497 1.6236 -0.0108 6 6 6.0914 0.9916 0.3649 7 6 5.3955 1.9464 1.3381 8 6 3.5436 -0.6665 -0.0030 9 6 2.2589 -1.0912 0.0031 10 6 1.7973 -2.5258 0.0064 11 7 1.5389 -2.9525 1.3839 12 6 1.1132 -4.2069 1.6321 13 8 0.9445 -4.9826 0.7152 14 6 0.8479 -4.6461 3.0491 15 6 0.3792 -6.1025 3.0523 16 6 0.1093 -6.5482 4.4909 17 6 -0.3530 -7.9825 4.4941 18 1 -0.4446 -8.5224 3.5632 19 6 -0.6589 -8.6056 5.6854 20 7 -0.5468 -7.9483 6.8190 21 14 -1.2312 -10.3838 5.6895 22 1 -1.2724 -10.8936 4.2953 23 1 -0.2882 -11.2055 6.4899 24 1 -2.5885 -10.4655 6.2863 25 1 -0.3634 0.0030 1.0276 26 1 -0.3634 0.8886 -0.5164 27 1 -0.3633 -0.8914 -0.5114 28 1 4.7564 2.4041 -0.7717 29 1 6.0954 -0.0691 0.6159 30 1 6.9809 1.3566 -0.1486 31 1 5.8275 2.9391 1.4646 32 1 4.9413 1.5143 2.2298 33 1 4.4211 -1.2963 -0.0064 34 1 0.8822 -2.6144 -0.5791 35 1 2.5708 -3.1574 -0.4306 36 1 1.6735 -2.3320 2.1172 37 1 1.7633 -4.5580 3.6342 38 1 0.0749 -4.0143 3.4865 39 1 -0.5360 -6.1910 2.4672 40 1 1.1525 -6.7341 2.6150 41 1 1.0244 -6.4596 5.0765 42 1 -0.6642 -5.9166 4.9278 43 1 -0.7616 -8.3867 7.6572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885824477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:33 Heat of formation + Delta-G solvation = 46.129432 kcal Electronic energy + Delta-G solvation = -21948.060328 eV Core-core repulsion = 18609.197441 eV Total energy + Delta-G solvation = -3338.862887 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.72480 -39.48509 -37.51155 -35.10432 -34.17666 -33.20305 -32.10444 -31.03913 -28.19246 -27.20613 -26.20390 -23.65332 -23.49115 -22.71947 -20.73242 -20.47858 -19.86862 -19.49578 -17.43196 -16.55501 -16.32218 -16.02153 -15.92036 -15.58768 -15.19412 -14.71244 -14.47037 -14.42974 -13.81961 -13.50019 -13.20102 -13.03238 -12.77444 -12.60971 -12.29476 -12.14691 -11.83549 -11.80479 -11.36477 -11.22321 -10.97585 -10.83358 -10.62712 -10.55329 -10.52641 -9.87765 -9.70340 -9.44527 -9.25108 -9.18675 -9.02386 -8.81499 -8.33261 -5.98689 -4.00053 1.38844 2.11732 2.32165 2.82855 3.33009 3.34246 3.40438 3.46159 3.48751 3.99479 4.13386 4.48590 4.49301 4.54950 4.61001 4.79089 4.83713 4.99210 5.03382 5.12286 5.24954 5.31156 5.37500 5.38917 5.42417 5.53301 5.67551 5.68553 5.74482 5.78280 5.87329 6.20150 6.28017 6.30353 6.63090 6.70291 6.90705 7.14221 7.40561 7.46426 7.70005 7.82211 8.02012 8.33700 8.45889 9.07362 9.64030 11.12848 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026710 B = 0.002321 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.057649 B =12059.678920 C =12471.096620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.364 5.364 3 N -0.283 5.283 4 C 0.101 3.899 5 C -0.081 4.081 6 C -0.165 4.165 7 C -0.165 4.165 8 C -0.244 4.244 9 C 0.067 3.933 10 C 0.185 3.815 11 N -0.738 5.738 12 C 0.515 3.485 13 O -0.535 6.535 14 C -0.138 4.138 15 C -0.095 4.095 16 C 0.020 3.980 17 C -0.517 4.517 18 H 0.057 0.943 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.892 3.108 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.149 0.851 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.402 0.598 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.327 21.745 -13.618 27.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.146 5.146 3 N -0.106 5.106 4 C -0.064 4.064 5 C -0.101 4.101 6 C -0.202 4.202 7 C -0.203 4.203 8 C -0.274 4.274 9 C -0.060 4.060 10 C 0.060 3.940 11 N -0.393 5.393 12 C 0.304 3.696 13 O -0.410 6.410 14 C -0.177 4.177 15 C -0.133 4.133 16 C -0.017 4.017 17 C -0.555 4.555 18 H 0.075 0.925 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.211 1.211 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.137 0.863 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.167 0.833 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.236 0.764 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.185 22.128 -14.125 27.498 hybrid contribution 0.148 -1.242 0.450 1.329 sum 8.334 20.887 -13.675 26.319 Atomic orbital electron populations 1.21930 0.73931 1.04657 1.03861 1.48476 1.06594 1.03093 1.56437 1.77325 1.01153 1.07364 1.24724 1.21329 0.92171 0.93001 0.99892 1.20132 0.88980 1.00503 1.00522 1.23033 0.94520 0.99700 1.02979 1.23005 1.03072 1.00893 0.93280 1.21147 0.96259 0.94304 1.15718 1.21032 0.91292 0.90159 1.03554 1.19691 1.01867 0.87064 0.85424 1.46186 1.70647 1.14577 1.07858 1.21322 0.75161 0.80353 0.92812 1.90694 1.50887 1.52499 1.46940 1.21855 1.03275 1.01349 0.91268 1.21453 1.00505 0.90439 1.00893 1.19140 0.96818 0.96136 0.89647 1.21307 1.44124 0.97353 0.92755 0.92507 1.25032 0.95781 0.98094 0.95679 1.69973 1.49474 1.36713 0.97579 0.86536 0.78293 0.85092 0.78114 1.19675 1.21026 1.21056 0.90336 0.89096 0.89223 0.86325 0.88106 0.88056 0.88187 0.88525 0.83282 0.90440 0.88860 0.76437 0.89210 0.89340 0.92689 0.92622 0.96578 0.96626 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.27 59.84 0.67 1.36 16 2 N -0.36 -3.70 4.01 -63.89 -0.26 -3.96 16 3 N -0.28 -3.35 12.58 33.67 0.42 -2.92 16 4 C 0.10 1.06 6.85 -82.41 -0.56 0.50 16 5 C -0.08 -0.65 6.33 -91.77 -0.58 -1.23 16 6 C -0.16 -1.03 10.02 -26.70 -0.27 -1.30 16 7 C -0.16 -1.13 10.24 -26.69 -0.27 -1.40 16 8 C -0.24 -2.43 10.02 -40.01 -0.40 -2.83 16 9 C 0.07 0.67 6.30 -82.26 -0.52 0.15 16 10 C 0.18 1.87 5.85 -5.19 -0.03 1.84 16 11 N -0.74 -8.18 5.55 -61.47 -0.34 -8.52 16 12 C 0.52 7.78 7.83 -10.99 -0.09 7.69 16 13 O -0.53 -10.12 15.98 5.55 0.09 -10.03 16 14 C -0.14 -2.19 5.70 -27.88 -0.16 -2.35 16 15 C -0.09 -2.01 4.44 -26.73 -0.12 -2.12 16 16 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 19 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 21 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.53 7.14 -51.93 -0.37 0.16 16 28 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.10 0.64 7.15 -51.93 -0.37 0.27 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.15 1.26 7.39 -52.48 -0.39 0.87 16 34 H 0.08 0.77 7.23 -51.93 -0.38 0.40 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.40 3.76 8.46 -40.82 -0.35 3.42 16 37 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 40 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -34.58 365.86 -8.62 -43.19 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.88 Total: -0.86 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -2.87 Total: -13.04 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.56 Total: -41.69 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.58 -8.62 -43.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885824477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.320 kcal (2) G-P(sol) polarization free energy of solvation -34.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds