Wall clock time and date at job start Tue Mar 31 2020 07:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40087 * 126.03964 * 2 1 4 4 C 1.30834 * 108.20871 * 180.22756 * 3 2 1 5 5 C 1.50701 * 125.90246 * 179.80983 * 4 3 2 6 6 C 1.52994 * 117.50121 * 163.70310 * 5 4 3 7 7 C 1.53003 * 117.49763 * 95.04228 * 5 4 3 8 8 C 1.39870 * 108.19969 * 359.77619 * 4 3 2 9 9 C 1.34944 * 126.03923 * 179.83470 * 2 1 3 10 10 C 1.50706 * 126.12597 * 0.03989 * 9 2 1 11 11 N 1.46496 * 109.47106 * 274.71381 * 10 9 2 12 12 C 1.34776 * 120.00006 * 179.97438 * 11 10 9 13 13 O 1.21285 * 119.99667 * 0.02562 * 12 11 10 14 14 C 1.50695 * 120.00245 * 179.97438 * 12 11 10 15 15 C 1.53006 * 109.47050 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46886 * 180.02562 * 15 14 12 17 17 C 1.50696 * 109.46999 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00290 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00176 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99700 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00377 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46521 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47364 * 119.99777 * 21 19 17 24 24 H 1.48497 * 109.46870 * 239.99844 * 21 19 17 25 25 H 1.08994 * 109.47551 * 270.16478 * 1 2 3 26 26 H 1.09005 * 109.47153 * 30.16267 * 1 2 3 27 27 H 1.09004 * 109.47124 * 150.15655 * 1 2 3 28 28 H 1.09003 * 115.54965 * 309.37823 * 5 4 3 29 29 H 1.09003 * 117.49704 * 0.02562 * 6 5 4 30 30 H 1.08994 * 117.49902 * 145.02057 * 6 5 4 31 31 H 1.08993 * 117.49814 * 214.98223 * 7 5 4 32 32 H 1.09001 * 117.49702 * 359.97438 * 7 5 4 33 33 H 1.08006 * 126.03715 * 179.97438 * 8 4 3 34 34 H 1.09001 * 109.46953 * 34.71120 * 10 9 2 35 35 H 1.09000 * 109.47318 * 154.70717 * 10 9 2 36 36 H 0.96998 * 120.00192 * 0.02562 * 11 10 9 37 37 H 1.08998 * 109.47789 * 300.00397 * 14 12 11 38 38 H 1.09001 * 109.47138 * 60.00989 * 14 12 11 39 39 H 1.08992 * 109.47559 * 300.00076 * 15 14 12 40 40 H 1.08996 * 109.47261 * 60.00612 * 15 14 12 41 41 H 1.09001 * 109.47600 * 300.00455 * 16 15 14 42 42 H 1.09004 * 109.47006 * 60.00233 * 16 15 14 43 43 H 0.96999 * 120.00022 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0049 5 6 4.7497 1.6236 -0.0108 6 6 6.0914 0.9916 0.3649 7 6 5.3955 1.9464 1.3381 8 6 3.5436 -0.6665 -0.0030 9 6 2.2589 -1.0912 0.0031 10 6 1.7973 -2.5258 0.0064 11 7 1.5389 -2.9525 1.3839 12 6 1.1132 -4.2069 1.6321 13 8 0.9445 -4.9826 0.7152 14 6 0.8479 -4.6461 3.0491 15 6 0.3792 -6.1025 3.0523 16 6 0.1093 -6.5482 4.4909 17 6 -0.3530 -7.9825 4.4941 18 1 -0.4446 -8.5224 3.5632 19 6 -0.6589 -8.6056 5.6854 20 7 -0.5468 -7.9483 6.8190 21 14 -1.2312 -10.3838 5.6895 22 1 -1.2724 -10.8936 4.2953 23 1 -0.2882 -11.2055 6.4899 24 1 -2.5885 -10.4655 6.2863 25 1 -0.3634 0.0030 1.0276 26 1 -0.3634 0.8886 -0.5164 27 1 -0.3633 -0.8914 -0.5114 28 1 4.7564 2.4041 -0.7717 29 1 6.0954 -0.0691 0.6159 30 1 6.9809 1.3566 -0.1486 31 1 5.8275 2.9391 1.4646 32 1 4.9413 1.5143 2.2298 33 1 4.4211 -1.2963 -0.0064 34 1 0.8822 -2.6144 -0.5791 35 1 2.5708 -3.1574 -0.4306 36 1 1.6735 -2.3320 2.1172 37 1 1.7633 -4.5580 3.6342 38 1 0.0749 -4.0143 3.4865 39 1 -0.5360 -6.1910 2.4672 40 1 1.1525 -6.7341 2.6150 41 1 1.0244 -6.4596 5.0765 42 1 -0.6642 -5.9166 4.9278 43 1 -0.7616 -8.3867 7.6572 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885824477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:32 Heat of formation + Delta-G solvation = 24.216193 kcal Electronic energy + Delta-G solvation = -21949.010558 eV Core-core repulsion = 18609.197441 eV Total energy + Delta-G solvation = -3339.813117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.48081 -40.69796 -38.08589 -36.32866 -35.88025 -34.04433 -33.86340 -32.01188 -29.82821 -27.84091 -27.39419 -25.41357 -24.15243 -23.23015 -22.33135 -21.42299 -21.02001 -20.27572 -18.68902 -18.07226 -17.54096 -16.99879 -16.78913 -16.65590 -16.45271 -16.00893 -15.54554 -15.23420 -14.89467 -14.78906 -14.29171 -14.13251 -13.76209 -13.66830 -13.60737 -13.34788 -13.06282 -12.78854 -12.61836 -12.51143 -12.37072 -12.31400 -11.91047 -11.54695 -11.54151 -11.46831 -11.25471 -11.17011 -10.90067 -10.54181 -10.21918 -10.13234 -9.56704 -8.19931 -6.29574 0.60120 1.39818 1.40343 1.44159 1.53929 1.56728 1.62528 2.32021 2.43127 2.93363 3.13256 3.28208 3.44786 3.85951 3.91154 3.99815 4.05945 4.13311 4.23295 4.28793 4.30327 4.38663 4.50570 4.62221 4.63701 4.66798 4.82554 4.82965 4.98427 5.01533 5.09741 5.12251 5.19628 5.23208 5.29381 5.30333 5.55922 5.58253 5.76949 5.88271 5.92932 6.27987 6.44702 6.64844 6.86587 7.19361 7.39191 8.91770 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.026710 B = 0.002321 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.057649 B =12059.678920 C =12471.096620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.367 5.367 3 N -0.314 5.314 4 C 0.094 3.906 5 C -0.099 4.099 6 C -0.152 4.152 7 C -0.164 4.164 8 C -0.251 4.251 9 C 0.066 3.934 10 C 0.190 3.810 11 N -0.717 5.717 12 C 0.524 3.476 13 O -0.577 6.577 14 C -0.131 4.131 15 C -0.082 4.082 16 C 0.024 3.976 17 C -0.545 4.545 18 H 0.052 0.948 19 C 0.001 3.999 20 N -0.930 5.930 21 Si 0.961 3.039 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.124 0.876 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.162 0.838 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.413 0.587 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.000 1.000 42 H 0.001 0.999 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.834 22.109 -13.987 27.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.149 5.149 3 N -0.137 5.137 4 C -0.070 4.070 5 C -0.119 4.119 6 C -0.190 4.190 7 C -0.202 4.202 8 C -0.281 4.281 9 C -0.062 4.062 10 C 0.065 3.935 11 N -0.370 5.370 12 C 0.312 3.688 13 O -0.456 6.456 14 C -0.170 4.170 15 C -0.120 4.120 16 C -0.013 4.013 17 C -0.583 4.583 18 H 0.070 0.930 19 C -0.196 4.196 20 N -0.571 5.571 21 Si 0.786 3.214 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.202 1.202 25 H 0.104 0.896 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.141 0.859 29 H 0.118 0.882 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.179 0.821 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.249 0.751 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.701 22.544 -14.489 28.176 hybrid contribution -0.002 -1.287 0.572 1.408 sum 8.699 21.257 -13.917 26.855 Atomic orbital electron populations 1.22169 0.72541 1.05671 1.04694 1.48716 1.07478 1.02715 1.56040 1.77282 1.01999 1.08450 1.25963 1.21736 0.92496 0.93632 0.99183 1.20262 0.89056 1.01057 1.01496 1.23122 0.94153 0.99598 1.02077 1.23051 1.02885 1.01876 0.92378 1.21386 0.96767 0.94415 1.15570 1.20985 0.91452 0.89928 1.03794 1.19689 1.02186 0.87118 0.84468 1.45914 1.68821 1.13324 1.08980 1.20975 0.75021 0.81084 0.91734 1.90688 1.53123 1.53950 1.47799 1.21679 1.04621 0.98099 0.92618 1.21162 0.99691 0.93827 0.97368 1.19035 0.95310 0.94810 0.92114 1.21730 1.44665 0.99040 0.92856 0.92963 1.25918 0.95716 1.02755 0.95243 1.70075 1.50094 1.38657 0.98224 0.85451 0.78089 0.79472 0.78367 1.19135 1.20142 1.20156 0.89552 0.88313 0.88071 0.85851 0.88189 0.86241 0.86704 0.89615 0.82079 0.89964 0.88727 0.75065 0.87465 0.87396 0.93872 0.93924 0.98129 0.98107 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 11.27 127.77 1.44 2.59 16 2 N -0.37 -7.06 4.01 -356.04 -1.43 -8.49 16 3 N -0.31 -7.21 12.58 -47.39 -0.60 -7.81 16 4 C 0.09 1.90 6.85 43.10 0.30 2.19 16 5 C -0.10 -1.48 6.33 -11.54 -0.07 -1.55 16 6 C -0.15 -1.63 10.02 30.62 0.31 -1.32 16 7 C -0.16 -2.03 10.24 30.62 0.31 -1.72 16 8 C -0.25 -4.69 10.02 21.99 0.22 -4.47 16 9 C 0.07 1.23 6.30 41.41 0.26 1.49 16 10 C 0.19 3.54 5.85 85.64 0.50 4.04 16 11 N -0.72 -14.52 5.55 -466.79 -2.59 -17.11 16 12 C 0.52 15.10 7.83 87.66 0.69 15.78 16 13 O -0.58 -21.48 15.98 -3.05 -0.05 -21.53 16 14 C -0.13 -3.99 5.70 29.85 0.17 -3.82 16 15 C -0.08 -3.50 4.44 30.60 0.14 -3.36 16 16 C 0.02 1.27 4.97 29.85 0.15 1.42 16 17 C -0.54 -31.74 9.11 25.60 0.23 -31.50 16 18 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 19 C 0.00 0.09 5.46 84.66 0.46 0.55 16 20 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 21 Si 0.96 44.93 29.54 68.60 2.03 46.95 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.10 1.04 7.14 -2.38 -0.02 1.02 16 28 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.10 1.09 7.15 -2.39 -0.02 1.07 16 30 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.16 2.48 7.39 -2.91 -0.02 2.46 16 34 H 0.08 1.51 7.23 -2.39 -0.02 1.49 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.41 6.77 8.46 -92.71 -0.78 5.98 16 37 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 40 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 41 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 43 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -74.27 365.86 2.97 -71.31 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.22 Total: 12.31 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 5.10 Total: -19.69 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -4.33 Total: -89.35 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.53 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -74.27 2.97 -71.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885824477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.522 kcal (2) G-P(sol) polarization free energy of solvation -74.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds