Wall clock time and date at job start Tue Mar 31 2020 07:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40088 * 126.03199 * 2 1 4 4 C 1.30835 * 108.20325 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.90166 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47097 * 274.98208 * 5 4 3 7 7 C 1.34779 * 120.00025 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99705 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00384 * 180.02562 * 7 6 5 10 10 C 1.52992 * 109.47431 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47167 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.46984 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00079 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99590 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00127 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99546 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47169 * 60.00076 * 16 14 12 18 18 H 1.48503 * 109.46873 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46893 * 299.99952 * 16 14 12 20 20 C 1.39871 * 108.20619 * 359.78136 * 4 3 2 21 21 C 1.34946 * 126.04118 * 180.02562 * 2 1 3 22 22 C 1.50701 * 126.12548 * 359.94631 * 21 2 1 23 23 C 1.53000 * 117.49727 * 144.99676 * 22 21 2 24 24 C 1.53002 * 60.02940 * 107.49982 * 23 22 21 25 25 H 1.09001 * 109.47066 * 269.96609 * 1 2 3 26 26 H 1.09000 * 109.47325 * 29.97264 * 1 2 3 27 27 H 1.09003 * 109.47076 * 149.97521 * 1 2 3 28 28 H 1.09004 * 109.46585 * 34.97760 * 5 4 3 29 29 H 1.08994 * 109.47502 * 154.97575 * 5 4 3 30 30 H 0.97000 * 120.00316 * 359.97438 * 6 5 4 31 31 H 1.08998 * 109.46472 * 299.99689 * 9 7 6 32 32 H 1.08997 * 109.46781 * 59.99269 * 9 7 6 33 33 H 1.09004 * 109.46771 * 299.99637 * 10 9 7 34 34 H 1.08994 * 109.47341 * 59.99467 * 10 9 7 35 35 H 1.09000 * 109.47583 * 300.00006 * 11 10 9 36 36 H 1.09002 * 109.47266 * 60.00324 * 11 10 9 37 37 H 0.97002 * 119.99722 * 179.97438 * 15 14 12 38 38 H 1.07994 * 126.04777 * 180.22906 * 20 4 3 39 39 H 1.08999 * 115.54923 * 359.32875 * 22 21 2 40 40 H 1.09002 * 117.49833 * 215.00087 * 23 22 21 41 41 H 1.09002 * 117.49953 * 0.02562 * 23 22 21 42 42 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 43 43 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 -0.0006 5 6 4.7496 1.6238 -0.0002 6 7 5.0720 2.0104 -1.3760 7 6 6.1273 2.8121 -1.6210 8 8 6.8098 3.2139 -0.7023 9 6 6.4588 3.2103 -3.0362 10 6 7.6916 4.1163 -3.0357 11 6 8.0284 4.5199 -4.4725 12 6 9.2424 5.4129 -4.4720 13 1 9.7256 5.6667 -3.5401 14 6 9.7367 5.9050 -5.6614 15 7 9.1485 5.5954 -6.7962 16 14 11.2419 7.0112 -5.6608 17 1 12.3919 6.2820 -5.0686 18 1 11.5687 7.4031 -7.0554 19 1 10.9612 8.2285 -4.8579 20 6 3.5438 -0.6664 0.0041 21 6 2.2590 -1.0912 -0.0005 22 6 1.7974 -2.5258 0.0000 23 6 2.6388 -3.5388 -0.7790 24 6 2.6579 -3.5450 0.7509 25 1 -0.3633 -0.0006 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 4.5444 2.5173 0.5896 29 1 5.5935 1.0878 0.4339 30 1 4.5260 1.6893 -2.1106 31 1 6.6641 2.3171 -3.6262 32 1 5.6145 3.7461 -3.4700 33 1 7.4858 5.0095 -2.4458 34 1 8.5359 3.5808 -2.6017 35 1 8.2342 3.6266 -5.0622 36 1 7.1841 5.0554 -4.9069 37 1 9.4961 5.9419 -7.6329 38 1 4.4211 -1.2961 0.0084 39 1 0.7174 -2.6721 0.0124 40 1 2.1122 -4.3516 -1.2791 41 1 3.5263 -3.1677 -1.2915 42 1 2.1439 -4.3621 1.2573 43 1 3.5576 -3.1777 1.2444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885900592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:06 Heat of formation + Delta-G solvation = 46.430399 kcal Electronic energy + Delta-G solvation = -21769.151506 eV Core-core repulsion = 18430.301670 eV Total energy + Delta-G solvation = -3338.849836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.74391 -39.32255 -37.57985 -35.24317 -34.09008 -33.21778 -31.95903 -30.23189 -28.97212 -27.43257 -25.47494 -23.93768 -23.47278 -22.89195 -20.57080 -20.48565 -19.76696 -19.49798 -17.58198 -16.65250 -16.15189 -15.89846 -15.60465 -15.43686 -15.41589 -14.84973 -14.38996 -14.19838 -13.77421 -13.44927 -13.28741 -12.95878 -12.77979 -12.56320 -12.19746 -12.06944 -12.01915 -11.74220 -11.45897 -11.27000 -11.20087 -10.77404 -10.73174 -10.56044 -10.49874 -9.74796 -9.60366 -9.40750 -9.16806 -8.95726 -8.94581 -8.78097 -8.26728 -5.92676 -3.93818 1.39397 2.08312 2.23983 3.01355 3.40421 3.41743 3.43415 3.47421 3.60867 3.89797 4.07582 4.31483 4.39590 4.44543 4.53718 4.60610 4.74226 4.99424 5.05073 5.13176 5.14112 5.22181 5.39547 5.42535 5.43208 5.58755 5.60306 5.64883 5.80459 5.81744 5.89857 6.27214 6.34067 6.51200 6.62622 6.80724 7.00897 7.23617 7.38893 7.67900 7.77107 7.90382 8.08481 8.51851 8.53709 9.13176 9.69707 11.18825 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.030084 B = 0.002175 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.510970 B =12870.304652 C =13037.380551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.369 5.369 3 N -0.276 5.276 4 C 0.062 3.938 5 C 0.203 3.797 6 N -0.734 5.734 7 C 0.515 3.485 8 O -0.538 6.538 9 C -0.137 4.137 10 C -0.095 4.095 11 C 0.020 3.980 12 C -0.517 4.517 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.256 4.256 21 C 0.118 3.882 22 C -0.110 4.110 23 C -0.159 4.159 24 C -0.159 4.159 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.401 0.599 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.148 0.852 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.770 -20.833 14.009 32.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.151 5.151 3 N -0.098 5.098 4 C -0.104 4.104 5 C 0.078 3.922 6 N -0.388 5.388 7 C 0.303 3.697 8 O -0.414 6.414 9 C -0.177 4.177 10 C -0.133 4.133 11 C -0.017 4.017 12 C -0.556 4.556 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.286 4.286 21 C -0.009 4.009 22 C -0.130 4.130 23 C -0.196 4.196 24 C -0.197 4.197 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.235 0.765 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.166 0.834 39 H 0.133 0.867 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.209 -19.469 14.506 32.238 hybrid contribution 0.766 -0.288 -0.436 0.927 sum -20.443 -19.757 14.070 31.721 Atomic orbital electron populations 1.21869 0.74282 1.04589 1.03433 1.48401 1.06502 1.03133 1.57071 1.77433 1.01257 1.07107 1.24027 1.22213 0.93161 0.93904 1.01114 1.19442 0.91006 0.96635 0.85139 1.46095 1.32126 1.52451 1.08131 1.21260 0.78897 0.76861 0.92696 1.90681 1.49968 1.53974 1.46773 1.21836 1.02179 1.02206 0.91503 1.21444 0.93750 0.97322 1.00778 1.19133 0.96475 0.96324 0.89767 1.21249 1.12267 1.29311 0.92726 0.92607 1.25027 0.97237 0.96636 0.95673 1.69956 1.40766 1.45482 0.97605 0.86648 0.83377 0.81138 0.76792 1.20232 1.21381 1.20244 1.21051 0.96297 0.94207 1.17025 1.20132 0.90761 0.88672 1.01375 1.20442 0.98261 0.85573 1.08678 1.23105 1.01996 0.99986 0.94552 1.23100 1.01748 0.99893 0.94925 0.90669 0.89011 0.89521 0.90195 0.89573 0.76536 0.89345 0.89375 0.92679 0.92663 0.96609 0.96625 0.93059 0.83422 0.86728 0.87918 0.87778 0.87961 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.21 59.85 0.67 1.21 16 2 N -0.37 -3.55 4.01 -63.88 -0.26 -3.80 16 3 N -0.28 -3.43 12.58 33.67 0.42 -3.00 16 4 C 0.06 0.73 6.59 -82.40 -0.54 0.18 16 5 C 0.20 2.52 6.23 -5.19 -0.03 2.49 16 6 N -0.73 -9.71 5.55 -61.47 -0.34 -10.05 16 7 C 0.51 8.70 7.83 -10.98 -0.09 8.61 16 8 O -0.54 -11.11 15.98 5.55 0.09 -11.02 16 9 C -0.14 -2.37 5.70 -27.89 -0.16 -2.53 16 10 C -0.09 -2.11 4.44 -26.74 -0.12 -2.23 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -15.24 9.11 -34.43 -0.31 -15.56 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 14 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 16 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C -0.26 -2.54 9.74 -40.01 -0.39 -2.93 16 21 C 0.12 1.04 6.62 -82.26 -0.54 0.49 16 22 C -0.11 -0.63 5.97 -91.74 -0.55 -1.18 16 23 C -0.16 -0.77 10.05 -26.73 -0.27 -1.04 16 24 C -0.16 -0.75 10.05 -26.69 -0.27 -1.02 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.26 7.24 -51.93 -0.38 -0.12 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.40 4.55 8.46 -40.82 -0.35 4.21 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 34 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.11 0.46 7.26 -51.93 -0.38 0.09 16 40 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.58 7.97 -51.93 -0.41 0.17 16 42 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 0.54 7.93 -51.93 -0.41 0.13 16 LS Contribution 366.81 15.07 5.53 5.53 Total: -1.00 -35.89 366.81 -8.63 -44.53 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.96 Total: -1.15 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.84 Total: -11.59 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.56 Total: -43.63 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.89 -8.63 -44.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885900592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.959 kcal (2) G-P(sol) polarization free energy of solvation -35.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds