Wall clock time and date at job start Tue Mar 31 2020 07:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40088 * 126.03199 * 2 1 4 4 C 1.30835 * 108.20325 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.90166 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47097 * 274.98208 * 5 4 3 7 7 C 1.34779 * 120.00025 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99705 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00384 * 180.02562 * 7 6 5 10 10 C 1.52992 * 109.47431 * 179.97438 * 9 7 6 11 11 C 1.52994 * 109.47167 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.46984 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00079 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99590 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00127 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99546 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47169 * 60.00076 * 16 14 12 18 18 H 1.48503 * 109.46873 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46893 * 299.99952 * 16 14 12 20 20 C 1.39871 * 108.20619 * 359.78136 * 4 3 2 21 21 C 1.34946 * 126.04118 * 180.02562 * 2 1 3 22 22 C 1.50701 * 126.12548 * 359.94631 * 21 2 1 23 23 C 1.53000 * 117.49727 * 144.99676 * 22 21 2 24 24 C 1.53002 * 60.02940 * 107.49982 * 23 22 21 25 25 H 1.09001 * 109.47066 * 269.96609 * 1 2 3 26 26 H 1.09000 * 109.47325 * 29.97264 * 1 2 3 27 27 H 1.09003 * 109.47076 * 149.97521 * 1 2 3 28 28 H 1.09004 * 109.46585 * 34.97760 * 5 4 3 29 29 H 1.08994 * 109.47502 * 154.97575 * 5 4 3 30 30 H 0.97000 * 120.00316 * 359.97438 * 6 5 4 31 31 H 1.08998 * 109.46472 * 299.99689 * 9 7 6 32 32 H 1.08997 * 109.46781 * 59.99269 * 9 7 6 33 33 H 1.09004 * 109.46771 * 299.99637 * 10 9 7 34 34 H 1.08994 * 109.47341 * 59.99467 * 10 9 7 35 35 H 1.09000 * 109.47583 * 300.00006 * 11 10 9 36 36 H 1.09002 * 109.47266 * 60.00324 * 11 10 9 37 37 H 0.97002 * 119.99722 * 179.97438 * 15 14 12 38 38 H 1.07994 * 126.04777 * 180.22906 * 20 4 3 39 39 H 1.08999 * 115.54923 * 359.32875 * 22 21 2 40 40 H 1.09002 * 117.49833 * 215.00087 * 23 22 21 41 41 H 1.09002 * 117.49953 * 0.02562 * 23 22 21 42 42 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 43 43 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 -0.0006 5 6 4.7496 1.6238 -0.0002 6 7 5.0720 2.0104 -1.3760 7 6 6.1273 2.8121 -1.6210 8 8 6.8098 3.2139 -0.7023 9 6 6.4588 3.2103 -3.0362 10 6 7.6916 4.1163 -3.0357 11 6 8.0284 4.5199 -4.4725 12 6 9.2424 5.4129 -4.4720 13 1 9.7256 5.6667 -3.5401 14 6 9.7367 5.9050 -5.6614 15 7 9.1485 5.5954 -6.7962 16 14 11.2419 7.0112 -5.6608 17 1 12.3919 6.2820 -5.0686 18 1 11.5687 7.4031 -7.0554 19 1 10.9612 8.2285 -4.8579 20 6 3.5438 -0.6664 0.0041 21 6 2.2590 -1.0912 -0.0005 22 6 1.7974 -2.5258 0.0000 23 6 2.6388 -3.5388 -0.7790 24 6 2.6579 -3.5450 0.7509 25 1 -0.3633 -0.0006 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 4.5444 2.5173 0.5896 29 1 5.5935 1.0878 0.4339 30 1 4.5260 1.6893 -2.1106 31 1 6.6641 2.3171 -3.6262 32 1 5.6145 3.7461 -3.4700 33 1 7.4858 5.0095 -2.4458 34 1 8.5359 3.5808 -2.6017 35 1 8.2342 3.6266 -5.0622 36 1 7.1841 5.0554 -4.9069 37 1 9.4961 5.9419 -7.6329 38 1 4.4211 -1.2961 0.0084 39 1 0.7174 -2.6721 0.0124 40 1 2.1122 -4.3516 -1.2791 41 1 3.5263 -3.1677 -1.2915 42 1 2.1439 -4.3621 1.2573 43 1 3.5576 -3.1777 1.2444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885900592.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:05 Heat of formation + Delta-G solvation = 23.076521 kcal Electronic energy + Delta-G solvation = -21770.164206 eV Core-core repulsion = 18430.301670 eV Total energy + Delta-G solvation = -3339.862536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.47064 -40.68872 -38.02580 -36.42826 -35.95965 -34.15687 -33.89478 -30.95032 -30.33542 -28.82772 -26.49786 -25.30162 -24.42925 -23.22481 -22.31293 -21.44896 -21.02249 -20.23549 -18.65982 -18.14791 -17.65153 -16.99019 -16.83847 -16.46758 -16.30844 -15.99107 -15.62498 -15.11133 -14.86632 -14.69147 -14.24503 -14.04183 -13.98395 -13.73934 -13.55096 -13.23087 -13.06037 -12.65978 -12.56940 -12.49525 -12.41002 -12.38620 -11.95905 -11.80249 -11.53435 -11.45582 -11.32068 -11.26933 -10.86973 -10.52796 -10.16348 -10.06465 -9.49447 -8.18783 -6.28735 0.67421 1.39174 1.40532 1.43665 1.49310 1.51680 1.64853 2.40324 2.47476 3.03910 3.13945 3.29823 3.47654 3.75774 3.90746 3.95917 4.08799 4.14887 4.24587 4.26217 4.32043 4.38468 4.51886 4.61669 4.64459 4.72102 4.82704 4.83575 4.95207 4.99188 5.04354 5.12380 5.20657 5.26755 5.27599 5.34677 5.50138 5.56021 5.77278 5.88406 6.02338 6.28810 6.50153 6.61720 6.86535 7.22829 7.39596 8.92603 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.030084 B = 0.002175 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.510970 B =12870.304652 C =13037.380551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.369 5.369 3 N -0.314 5.314 4 C 0.052 3.948 5 C 0.207 3.793 6 N -0.714 5.714 7 C 0.520 3.480 8 O -0.580 6.580 9 C -0.129 4.129 10 C -0.082 4.082 11 C 0.025 3.975 12 C -0.548 4.548 13 H 0.052 0.948 14 C 0.001 3.999 15 N -0.930 5.930 16 Si 0.963 3.037 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.270 1.270 20 C -0.272 4.272 21 C 0.124 3.876 22 C -0.118 4.118 23 C -0.156 4.156 24 C -0.154 4.154 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.412 0.588 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.040 0.960 34 H 0.043 0.957 35 H 0.002 0.998 36 H 0.000 1.000 37 H 0.264 0.736 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.120 0.880 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.835 -22.406 14.208 34.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.152 5.152 3 N -0.137 5.137 4 C -0.113 4.113 5 C 0.082 3.918 6 N -0.367 5.367 7 C 0.308 3.692 8 O -0.460 6.460 9 C -0.169 4.169 10 C -0.120 4.120 11 C -0.012 4.012 12 C -0.586 4.586 13 H 0.070 0.930 14 C -0.196 4.196 15 N -0.570 5.570 16 Si 0.787 3.213 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.195 1.195 20 C -0.301 4.301 21 C -0.004 4.004 22 C -0.138 4.138 23 C -0.193 4.193 24 C -0.192 4.192 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.133 0.867 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.248 0.752 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.020 0.980 36 H 0.018 0.982 37 H 0.073 0.927 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.138 0.862 41 H 0.112 0.888 42 H 0.139 0.861 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.319 -21.065 14.701 34.029 hybrid contribution 0.989 0.128 -0.492 1.112 sum -21.331 -20.937 14.209 33.094 Atomic orbital electron populations 1.22233 0.72090 1.06008 1.04777 1.48730 1.07769 1.02592 1.56081 1.77338 1.01860 1.09049 1.25492 1.22053 0.92675 0.94483 1.02099 1.19396 0.91904 0.96422 0.84102 1.45876 1.30793 1.50854 1.09189 1.21045 0.79271 0.76984 0.91861 1.90669 1.51696 1.55902 1.47724 1.21672 1.00437 1.02276 0.92494 1.21165 0.95739 0.97654 0.97489 1.19023 0.95079 0.95078 0.91984 1.21673 1.13572 1.30370 0.92947 0.92961 1.25932 1.00483 0.98048 0.95176 1.70065 1.42296 1.46397 0.98236 0.85538 0.79345 0.79104 0.77291 1.19333 1.20375 1.19478 1.21222 0.97452 0.93541 1.17930 1.20609 0.90359 0.89941 0.99518 1.20624 0.99613 0.83724 1.09828 1.23165 1.01529 0.99894 0.94756 1.23176 1.01289 0.99757 0.94971 0.89345 0.89095 0.86662 0.91490 0.89101 0.75157 0.87205 0.87672 0.94083 0.93779 0.97987 0.98209 0.92676 0.82543 0.84561 0.86175 0.88810 0.86112 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.21 127.77 1.43 2.21 16 2 N -0.37 -6.61 4.01 -356.03 -1.43 -8.04 16 3 N -0.31 -7.70 12.58 -47.38 -0.60 -8.30 16 4 C 0.05 1.20 6.59 43.10 0.28 1.48 16 5 C 0.21 5.18 6.23 85.63 0.53 5.71 16 6 N -0.71 -18.57 5.55 -466.78 -2.59 -21.16 16 7 C 0.52 17.50 7.83 87.66 0.69 18.19 16 8 O -0.58 -24.35 15.98 -3.06 -0.05 -24.40 16 9 C -0.13 -4.40 5.70 29.85 0.17 -4.23 16 10 C -0.08 -3.73 4.44 30.59 0.14 -3.59 16 11 C 0.03 1.38 4.97 29.85 0.15 1.53 16 12 C -0.55 -32.79 9.11 25.60 0.23 -32.56 16 13 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 14 C 0.00 0.09 5.46 84.66 0.46 0.55 16 15 N -0.93 -57.29 13.29 21.45 0.28 -57.00 16 16 Si 0.96 45.86 29.54 68.60 2.03 47.88 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 C -0.27 -5.20 9.74 21.99 0.21 -4.98 16 21 C 0.12 1.99 6.62 41.41 0.27 2.26 16 22 C -0.12 -1.04 5.97 -11.52 -0.07 -1.11 16 23 C -0.16 -1.14 10.05 30.60 0.31 -0.83 16 24 C -0.15 -1.08 10.05 30.62 0.31 -0.77 16 25 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.12 0.32 7.24 -2.39 -0.02 0.31 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.41 8.94 8.46 -92.71 -0.78 8.16 16 31 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 34 H 0.04 2.06 8.10 -2.39 -0.02 2.04 16 35 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.14 0.60 7.26 -2.39 -0.02 0.58 16 40 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.09 0.90 7.97 -2.39 -0.02 0.88 16 42 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.09 0.84 7.93 -2.39 -0.02 0.83 16 Total: -1.00 -78.10 366.81 2.98 -75.12 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.21 Total: 12.05 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: 5.12 Total: -16.15 kcal Atomic # 7 Polarization: -90.17 SS G_CDS: -4.33 Total: -94.50 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.05 Total: -24.40 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -78.10 2.98 -75.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885900592.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.198 kcal (2) G-P(sol) polarization free energy of solvation -78.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds