Wall clock time and date at job start Tue Mar 31 2020 06:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.47075 * 2 1 4 4 C 1.34775 * 119.99986 * 84.92628 * 3 2 1 5 5 O 1.21601 * 119.99902 * 185.31397 * 4 3 2 6 6 C 1.47433 * 119.99927 * 5.30834 * 4 3 2 7 7 C 1.41282 * 126.41597 * 343.97287 * 6 4 3 8 8 N 1.30448 * 108.02268 * 179.97438 * 7 6 4 9 9 N 1.39936 * 108.89753 * 359.73730 * 8 7 6 10 10 C 1.46497 * 125.75656 * 180.30164 * 9 8 7 11 11 C 1.50701 * 109.46905 * 270.15579 * 10 9 8 12 12 H 1.08004 * 120.00176 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99883 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99850 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00105 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47409 * 89.99058 * 15 13 11 17 17 H 1.48497 * 109.46926 * 209.99322 * 15 13 11 18 18 H 1.48502 * 109.46839 * 329.99568 * 15 13 11 19 19 C 1.34257 * 108.48841 * 0.43228 * 9 8 7 20 20 C 1.50702 * 126.29088 * 179.84154 * 19 9 8 21 21 C 1.46501 * 119.99820 * 264.92464 * 3 2 1 22 22 C 1.53776 * 113.61315 * 223.16239 * 21 3 2 23 23 C 1.53956 * 87.01883 * 220.04735 * 22 21 3 24 24 C 1.53781 * 113.61198 * 125.55303 * 21 3 2 25 25 H 1.08991 * 109.47067 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46897 * 299.99905 * 1 2 3 27 27 H 1.09001 * 109.46697 * 59.99883 * 1 2 3 28 28 H 1.09004 * 109.47117 * 239.99869 * 2 1 3 29 29 H 1.09007 * 109.46988 * 119.99760 * 2 1 3 30 30 H 1.07997 * 125.99107 * 359.93369 * 7 6 4 31 31 H 1.08997 * 109.47401 * 30.15116 * 10 9 8 32 32 H 1.09000 * 109.47239 * 150.15499 * 10 9 8 33 33 H 0.96999 * 119.99875 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.47372 * 269.69300 * 20 19 9 35 35 H 1.09003 * 109.47274 * 149.68785 * 20 19 9 36 36 H 1.09000 * 109.47116 * 29.69667 * 20 19 9 37 37 H 1.08999 * 112.85104 * 354.35715 * 21 3 2 38 38 H 1.09004 * 113.61364 * 334.56738 * 22 21 3 39 39 H 1.08998 * 113.61492 * 105.47168 * 22 21 3 40 40 H 1.08997 * 113.53947 * 270.80737 * 23 22 21 41 41 H 1.09002 * 113.66436 * 139.92881 * 23 22 21 42 42 H 1.08995 * 113.61234 * 254.52550 * 24 21 3 43 43 H 1.08994 * 113.61250 * 25.34631 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1457 2.0510 1.1626 5 8 2.4579 3.2262 1.1562 6 6 1.9063 1.3588 2.4421 7 6 1.2453 0.1223 2.6159 8 7 1.2347 -0.1541 3.8907 9 7 1.8842 0.8742 4.5828 10 6 2.0879 0.9350 6.0322 11 6 0.9188 1.6361 6.6748 12 1 0.1056 2.0004 6.0644 13 6 0.8878 1.8135 8.0418 14 7 1.8783 1.3704 8.7849 15 14 -0.5616 2.6818 8.8384 16 1 -1.6023 1.6838 9.1938 17 1 -0.1057 3.3805 10.0669 18 1 -1.1291 3.6714 7.8877 19 6 2.2866 1.7971 3.6946 20 6 3.0238 3.0739 4.0070 21 6 2.3684 2.0344 -1.2638 22 6 3.6745 2.8434 -1.1980 23 6 2.9658 3.9054 -2.0584 24 6 1.6413 3.3707 -1.4885 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 0.8223 -0.4871 1.8310 31 1 2.1686 -0.0763 6.4306 32 1 3.0042 1.4846 6.2477 33 1 1.8563 1.4948 9.7466 34 1 2.3054 3.8748 4.1819 35 1 3.6651 3.3383 3.1662 36 1 3.6341 2.9322 4.8989 37 1 2.3154 1.3594 -2.1180 38 1 3.9238 3.1894 -0.1949 39 1 4.5126 2.3610 -1.7010 40 1 3.0774 3.7425 -3.1303 41 1 3.1878 4.9298 -1.7595 42 1 0.8404 3.3134 -2.2257 43 1 1.3324 3.8604 -0.5651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889079761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:21 Heat of formation + Delta-G solvation = 75.151743 kcal Electronic energy + Delta-G solvation = -23988.526146 eV Core-core repulsion = 20650.921760 eV Total energy + Delta-G solvation = -3337.604385 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.08005 -39.85917 -37.00716 -35.74562 -33.75932 -32.04108 -31.06018 -30.33577 -27.63405 -26.65042 -25.54165 -24.91967 -23.57456 -23.28449 -21.32784 -20.48715 -19.13121 -18.26159 -16.80151 -16.72330 -16.10965 -15.63828 -15.20242 -14.92822 -14.72694 -14.26223 -13.93869 -13.70763 -13.17069 -12.97406 -12.62682 -12.52630 -12.42230 -12.27617 -12.07652 -11.99293 -11.71809 -11.60823 -11.44636 -11.29533 -11.10593 -10.98684 -10.87494 -10.47013 -10.33808 -10.32725 -10.09948 -9.89802 -9.07724 -8.70303 -8.58475 -8.40539 -7.85438 -6.32869 -4.40507 2.22335 2.81369 3.13461 3.18960 3.25277 3.29304 3.44522 3.83983 4.25134 4.61354 4.70703 4.80554 4.94610 4.95609 5.01489 5.13524 5.20685 5.24597 5.36644 5.43263 5.56038 5.66089 5.69037 5.75059 5.81659 5.88848 5.92615 5.98402 6.12198 6.17594 6.19465 6.21074 6.38013 6.47290 6.56011 6.81425 6.90794 6.94251 7.18791 7.57566 7.69341 7.78365 7.81221 8.40621 8.62923 8.66242 9.26394 10.75329 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.003985 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.731814 B = 7024.131335 C = 7426.629461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 N -0.606 5.606 4 C 0.606 3.394 5 O -0.547 6.547 6 C -0.330 4.330 7 C 0.031 3.969 8 N -0.298 5.298 9 N -0.314 5.314 10 C 0.251 3.749 11 C -0.539 4.539 12 H 0.065 0.935 13 C 0.068 3.932 14 N -0.890 5.890 15 Si 0.908 3.092 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.271 1.271 19 C 0.162 3.838 20 C -0.087 4.087 21 C 0.127 3.873 22 C -0.154 4.154 23 C -0.136 4.136 24 C -0.149 4.149 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.199 0.801 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.269 0.731 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -0.497 -19.170 19.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.037 4.037 3 N -0.337 5.337 4 C 0.398 3.602 5 O -0.427 6.427 6 C -0.346 4.346 7 C -0.155 4.155 8 N -0.118 5.118 9 N -0.091 5.091 10 C 0.134 3.866 11 C -0.578 4.578 12 H 0.083 0.917 13 C -0.136 4.136 14 N -0.528 5.528 15 Si 0.734 3.266 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.196 1.196 19 C 0.025 3.975 20 C -0.145 4.145 21 C 0.023 3.977 22 C -0.192 4.192 23 C -0.174 4.174 24 C -0.188 4.188 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.215 0.785 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.704 -0.786 -17.879 17.978 hybrid contribution -0.699 0.756 -0.120 1.037 sum 1.004 -0.031 -18.000 18.028 Atomic orbital electron populations 1.22410 0.96071 1.02459 1.03276 1.22128 0.94390 0.83307 1.03885 1.47633 1.66447 1.13801 1.05843 1.17287 0.75360 0.85282 0.82223 1.90624 1.49189 1.15558 1.87309 1.19710 1.20732 1.01393 0.92745 1.24864 0.99898 0.95912 0.94823 1.77166 1.17274 1.12169 1.05161 1.49369 1.37565 1.12958 1.09189 1.19836 0.98565 1.00126 0.68092 1.21255 1.05448 1.38660 0.92408 0.91680 1.24918 0.96719 0.95292 0.96699 1.69912 1.31266 1.45325 1.06253 0.86329 0.81838 0.79658 0.78747 1.20246 1.20782 1.19593 1.21431 0.95042 0.92497 0.88570 1.20480 0.99693 0.91751 1.02614 1.22564 0.96442 0.92893 0.85778 1.23491 0.96040 0.96971 1.02723 1.22609 0.97006 0.99330 0.98461 1.23374 0.96540 0.96846 1.02021 0.91296 0.91180 0.92148 0.90742 0.88348 0.78510 0.92560 0.92634 0.92130 0.89715 0.89555 0.90953 0.87928 0.87268 0.92295 0.90885 0.91208 0.92318 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.80 37.16 0.33 -1.47 16 2 C 0.09 0.90 5.65 -4.04 -0.02 0.87 16 3 N -0.61 -7.92 2.73 -166.43 -0.46 -8.37 16 4 C 0.61 10.15 7.01 -12.52 -0.09 10.06 16 5 O -0.55 -10.02 10.89 5.28 0.06 -9.97 16 6 C -0.33 -6.14 5.91 -105.07 -0.62 -6.76 16 7 C 0.03 0.54 8.72 -16.98 -0.15 0.39 16 8 N -0.30 -6.45 12.50 30.86 0.39 -6.06 16 9 N -0.31 -7.14 3.56 -57.78 -0.21 -7.35 16 10 C 0.25 6.28 5.97 -5.19 -0.03 6.25 16 11 C -0.54 -14.64 9.39 -34.44 -0.32 -14.96 16 12 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 13 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 14 N -0.89 -24.67 13.29 55.43 0.74 -23.94 16 15 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C 0.16 3.32 7.00 -81.60 -0.57 2.75 16 20 C -0.09 -1.58 9.45 36.01 0.34 -1.24 16 21 C 0.13 1.43 4.41 -67.12 -0.30 1.13 16 22 C -0.15 -1.81 7.38 -25.83 -0.19 -2.00 16 23 C -0.14 -1.42 8.09 -25.82 -0.21 -1.63 16 24 C -0.15 -1.75 7.44 -25.92 -0.19 -1.94 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.86 6.56 -51.93 -0.34 0.52 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.59 7.88 -51.93 -0.41 0.18 16 29 H 0.10 1.12 4.55 -51.93 -0.24 0.89 16 30 H 0.20 2.71 3.44 -52.49 -0.18 2.52 16 31 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.06 1.38 7.01 -51.93 -0.36 1.01 16 33 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 35 H 0.09 1.46 6.94 -51.93 -0.36 1.10 16 36 H 0.07 1.28 7.04 -51.93 -0.37 0.91 16 37 H 0.10 0.90 7.91 -51.93 -0.41 0.49 16 38 H 0.11 1.61 5.68 -51.93 -0.29 1.32 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.10 1.50 6.26 -51.93 -0.32 1.17 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -29.97 339.02 -7.73 -37.70 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.21 Total: 3.79 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.12 Total: -6.82 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.46 Total: -45.72 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.06 Total: -9.97 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.97 -7.73 -37.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889079761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.848 kcal (2) G-P(sol) polarization free energy of solvation -29.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds