Wall clock time and date at job start Tue Mar 31 2020 06:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.47075 * 2 1 4 4 C 1.34775 * 119.99986 * 84.92628 * 3 2 1 5 5 O 1.21601 * 119.99902 * 185.31397 * 4 3 2 6 6 C 1.47433 * 119.99927 * 5.30834 * 4 3 2 7 7 C 1.41282 * 126.41597 * 343.97287 * 6 4 3 8 8 N 1.30448 * 108.02268 * 179.97438 * 7 6 4 9 9 N 1.39936 * 108.89753 * 359.73730 * 8 7 6 10 10 C 1.46497 * 125.75656 * 180.30164 * 9 8 7 11 11 C 1.50701 * 109.46905 * 270.15579 * 10 9 8 12 12 H 1.08004 * 120.00176 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99883 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99850 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00105 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47409 * 89.99058 * 15 13 11 17 17 H 1.48497 * 109.46926 * 209.99322 * 15 13 11 18 18 H 1.48502 * 109.46839 * 329.99568 * 15 13 11 19 19 C 1.34257 * 108.48841 * 0.43228 * 9 8 7 20 20 C 1.50702 * 126.29088 * 179.84154 * 19 9 8 21 21 C 1.46501 * 119.99820 * 264.92464 * 3 2 1 22 22 C 1.53776 * 113.61315 * 223.16239 * 21 3 2 23 23 C 1.53956 * 87.01883 * 220.04735 * 22 21 3 24 24 C 1.53781 * 113.61198 * 125.55303 * 21 3 2 25 25 H 1.08991 * 109.47067 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46897 * 299.99905 * 1 2 3 27 27 H 1.09001 * 109.46697 * 59.99883 * 1 2 3 28 28 H 1.09004 * 109.47117 * 239.99869 * 2 1 3 29 29 H 1.09007 * 109.46988 * 119.99760 * 2 1 3 30 30 H 1.07997 * 125.99107 * 359.93369 * 7 6 4 31 31 H 1.08997 * 109.47401 * 30.15116 * 10 9 8 32 32 H 1.09000 * 109.47239 * 150.15499 * 10 9 8 33 33 H 0.96999 * 119.99875 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.47372 * 269.69300 * 20 19 9 35 35 H 1.09003 * 109.47274 * 149.68785 * 20 19 9 36 36 H 1.09000 * 109.47116 * 29.69667 * 20 19 9 37 37 H 1.08999 * 112.85104 * 354.35715 * 21 3 2 38 38 H 1.09004 * 113.61364 * 334.56738 * 22 21 3 39 39 H 1.08998 * 113.61492 * 105.47168 * 22 21 3 40 40 H 1.08997 * 113.53947 * 270.80737 * 23 22 21 41 41 H 1.09002 * 113.66436 * 139.92881 * 23 22 21 42 42 H 1.08995 * 113.61234 * 254.52550 * 24 21 3 43 43 H 1.08994 * 113.61250 * 25.34631 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1457 2.0510 1.1626 5 8 2.4579 3.2262 1.1562 6 6 1.9063 1.3588 2.4421 7 6 1.2453 0.1223 2.6159 8 7 1.2347 -0.1541 3.8907 9 7 1.8842 0.8742 4.5828 10 6 2.0879 0.9350 6.0322 11 6 0.9188 1.6361 6.6748 12 1 0.1056 2.0004 6.0644 13 6 0.8878 1.8135 8.0418 14 7 1.8783 1.3704 8.7849 15 14 -0.5616 2.6818 8.8384 16 1 -1.6023 1.6838 9.1938 17 1 -0.1057 3.3805 10.0669 18 1 -1.1291 3.6714 7.8877 19 6 2.2866 1.7971 3.6946 20 6 3.0238 3.0739 4.0070 21 6 2.3684 2.0344 -1.2638 22 6 3.6745 2.8434 -1.1980 23 6 2.9658 3.9054 -2.0584 24 6 1.6413 3.3707 -1.4885 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 0.8223 -0.4871 1.8310 31 1 2.1686 -0.0763 6.4306 32 1 3.0042 1.4846 6.2477 33 1 1.8563 1.4948 9.7466 34 1 2.3054 3.8748 4.1819 35 1 3.6651 3.3383 3.1662 36 1 3.6341 2.9322 4.8989 37 1 2.3154 1.3594 -2.1180 38 1 3.9238 3.1894 -0.1949 39 1 4.5126 2.3610 -1.7010 40 1 3.0774 3.7425 -3.1303 41 1 3.1878 4.9298 -1.7595 42 1 0.8404 3.3134 -2.2257 43 1 1.3324 3.8604 -0.5651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889079761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:20 Heat of formation + Delta-G solvation = 57.888231 kcal Electronic energy + Delta-G solvation = -23989.274748 eV Core-core repulsion = 20650.921760 eV Total energy + Delta-G solvation = -3338.352987 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.52314 -41.06407 -38.12693 -36.85906 -35.65997 -33.76211 -32.68807 -31.29827 -29.34397 -28.27059 -26.44830 -26.12019 -25.13593 -24.43183 -22.70939 -21.70544 -20.38322 -19.61940 -18.86188 -17.88086 -17.42551 -16.94705 -16.57318 -16.38161 -15.97352 -15.71895 -15.36743 -15.00623 -14.37895 -14.18357 -14.05725 -13.98090 -13.83511 -13.65872 -13.31501 -13.16791 -13.02723 -12.93782 -12.77431 -12.73324 -12.69844 -12.32294 -12.11737 -11.98219 -11.81592 -11.66506 -11.32349 -11.17500 -10.77473 -10.35536 -10.23791 -9.61198 -9.31857 -8.39160 -6.55624 0.69774 1.31808 1.35966 1.37446 1.47647 1.67968 2.16941 2.31419 2.47800 2.92798 3.63407 3.72376 3.82154 3.83847 3.99660 4.08258 4.10544 4.18253 4.22570 4.39174 4.41557 4.54752 4.61029 4.68050 4.77605 4.86235 4.89284 4.92069 4.96079 5.01861 5.05236 5.12185 5.15946 5.21086 5.31337 5.41429 5.47474 5.52043 5.66450 5.73719 5.96092 6.04916 6.53333 6.55181 6.83303 7.15473 7.37738 8.68683 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.003985 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.731814 B = 7024.131335 C = 7426.629461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.080 3.920 3 N -0.597 5.597 4 C 0.601 3.399 5 O -0.568 6.568 6 C -0.330 4.330 7 C 0.053 3.947 8 N -0.337 5.337 9 N -0.338 5.338 10 C 0.267 3.733 11 C -0.557 4.557 12 H 0.049 0.951 13 C 0.025 3.975 14 N -0.916 5.916 15 Si 0.971 3.029 16 H -0.272 1.272 17 H -0.270 1.270 18 H -0.272 1.272 19 C 0.140 3.860 20 C -0.079 4.079 21 C 0.127 3.873 22 C -0.160 4.160 23 C -0.126 4.126 24 C -0.153 4.153 25 H 0.094 0.906 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.239 0.761 31 H 0.032 0.968 32 H 0.050 0.950 33 H 0.275 0.725 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.144 0.856 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.100 -1.043 -21.951 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.042 4.042 3 N -0.328 5.328 4 C 0.392 3.608 5 O -0.450 6.450 6 C -0.345 4.345 7 C -0.132 4.132 8 N -0.157 5.157 9 N -0.115 5.115 10 C 0.149 3.851 11 C -0.595 4.595 12 H 0.067 0.933 13 C -0.176 4.176 14 N -0.554 5.554 15 Si 0.795 3.205 16 H -0.197 1.197 17 H -0.194 1.194 18 H -0.196 1.196 19 C 0.005 3.995 20 C -0.137 4.137 21 C 0.024 3.976 22 C -0.198 4.198 23 C -0.164 4.164 24 C -0.192 4.192 25 H 0.113 0.887 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.132 0.868 29 H 0.104 0.896 30 H 0.254 0.746 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.161 0.839 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.991 -1.347 -20.696 20.763 hybrid contribution -0.453 0.903 0.581 1.166 sum 0.537 -0.444 -20.114 20.127 Atomic orbital electron populations 1.22383 0.95359 1.03869 1.02327 1.22344 0.94887 0.81788 1.05228 1.47698 1.65107 1.14671 1.05298 1.17148 0.75793 0.85080 0.82764 1.90627 1.50158 1.16472 1.87704 1.20074 1.19735 1.01534 0.93174 1.25570 0.97840 0.95545 0.94262 1.77114 1.18892 1.12907 1.06792 1.49116 1.39548 1.14289 1.08524 1.19359 0.97738 0.98194 0.69835 1.21387 1.05761 1.39372 0.92961 0.93250 1.25712 0.99229 0.95688 0.96994 1.69989 1.32731 1.45900 1.06743 0.85361 0.78627 0.78580 0.77982 1.19691 1.19445 1.19633 1.21925 0.95516 0.92898 0.89195 1.20447 0.99479 0.90822 1.02976 1.22895 0.95603 0.93311 0.85744 1.23411 0.97166 0.97957 1.01307 1.22625 0.95604 0.98313 0.99869 1.23279 0.97792 0.97144 1.00941 0.88713 0.94109 0.91110 0.86754 0.89574 0.74594 0.94989 0.93199 0.91611 0.90165 0.88465 0.91042 0.83892 0.90833 0.90466 0.87849 0.92405 0.90349 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 8.80 71.98 0.63 -2.30 16 2 C 0.08 1.37 5.65 86.38 0.49 1.86 16 3 N -0.60 -14.23 2.73 -798.72 -2.18 -16.41 16 4 C 0.60 19.90 7.01 86.67 0.61 20.51 16 5 O -0.57 -21.18 10.89 -4.03 -0.04 -21.22 16 6 C -0.33 -12.34 5.91 -20.15 -0.12 -12.46 16 7 C 0.05 1.87 8.72 85.65 0.75 2.61 16 8 N -0.34 -14.93 12.50 -56.28 -0.70 -15.63 16 9 N -0.34 -16.01 3.56 -336.71 -1.20 -17.20 16 10 C 0.27 14.06 5.97 85.63 0.51 14.57 16 11 C -0.56 -31.27 9.39 25.60 0.24 -31.03 16 12 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 13 C 0.03 1.38 5.46 84.66 0.46 1.84 16 14 N -0.92 -51.63 13.29 21.45 0.28 -51.34 16 15 Si 0.97 43.24 29.54 68.60 2.03 45.26 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 19 C 0.14 5.96 7.00 42.14 0.30 6.26 16 20 C -0.08 -3.00 9.45 71.24 0.67 -2.33 16 21 C 0.13 2.44 4.41 45.52 0.20 2.64 16 22 C -0.16 -3.44 7.38 31.18 0.23 -3.21 16 23 C -0.13 -2.34 8.09 31.18 0.25 -2.08 16 24 C -0.15 -3.26 7.44 31.12 0.23 -3.03 16 25 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.04 0.91 6.56 -2.39 -0.02 0.90 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 28 H 0.11 1.16 7.88 -2.39 -0.02 1.14 16 29 H 0.09 1.72 4.55 -2.38 -0.01 1.71 16 30 H 0.24 6.05 3.44 -2.91 -0.01 6.04 16 31 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 2.62 7.01 -2.39 -0.02 2.61 16 33 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 34 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.10 3.41 6.94 -2.39 -0.02 3.39 16 36 H 0.07 2.66 7.04 -2.39 -0.02 2.64 16 37 H 0.14 1.68 7.91 -2.39 -0.02 1.66 16 38 H 0.07 2.16 5.68 -2.39 -0.01 2.15 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.06 1.86 6.26 -2.39 -0.01 1.85 16 Total: -1.00 -67.83 339.02 4.65 -63.18 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 1.02 Total: 19.52 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 5.45 Total: -6.15 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -3.80 Total: -100.60 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.04 Total: -21.22 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -67.83 4.65 -63.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889079761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.069 kcal (2) G-P(sol) polarization free energy of solvation -67.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds