Wall clock time and date at job start Tue Mar 31 2020 07:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35912 * 116.99821 * 2 1 4 4 C 1.39133 * 120.47185 * 179.97438 * 3 2 1 5 5 C 1.38543 * 118.37756 * 180.02562 * 4 3 2 6 6 C 1.38253 * 119.21528 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.55567 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47201 * 94.99526 * 7 6 5 9 9 C 1.46897 * 111.00439 * 180.02562 * 8 7 6 10 10 C 1.53034 * 109.46478 * 155.00165 * 9 8 7 11 11 C 1.53194 * 109.31631 * 181.38805 * 10 9 8 12 12 N 1.46928 * 108.88836 * 305.29172 * 11 10 9 13 13 C 1.36934 * 120.63084 * 233.67060 * 12 11 10 14 14 H 1.07993 * 120.00334 * 27.39912 * 13 12 11 15 15 C 1.38820 * 119.99795 * 207.39526 * 13 12 11 16 16 N 1.31613 * 120.00097 * 17.26991 * 15 13 12 17 17 Si 1.86807 * 119.99669 * 197.26997 * 15 13 12 18 18 H 1.48498 * 109.47115 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46875 * 120.00003 * 17 15 13 20 20 H 1.48497 * 109.47091 * 240.00248 * 17 15 13 21 21 C 1.47211 * 118.55611 * 53.54535 * 12 11 10 22 22 C 1.53045 * 109.46059 * 275.07233 * 9 8 7 23 23 N 1.31851 * 120.89020 * 0.25218 * 6 5 4 24 24 C 1.31841 * 121.77765 * 359.47447 * 23 6 5 25 25 H 1.08994 * 109.47275 * 299.99825 * 1 2 3 26 26 H 1.08998 * 109.46997 * 60.00182 * 1 2 3 27 27 H 1.09001 * 109.46688 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.81872 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.38903 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.46841 * 335.00362 * 7 6 5 31 31 H 1.08995 * 109.47570 * 214.99718 * 7 6 5 32 32 H 1.00898 * 111.00545 * 303.96106 * 8 7 6 33 33 H 1.08998 * 109.44622 * 35.03339 * 9 8 7 34 34 H 1.08997 * 109.49513 * 61.43676 * 10 9 8 35 35 H 1.09004 * 109.49828 * 301.33903 * 10 9 8 36 36 H 1.09000 * 109.58642 * 65.14938 * 11 10 9 37 37 H 1.09000 * 109.58560 * 185.43802 * 11 10 9 38 38 H 0.97008 * 119.99917 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.53679 * 186.67414 * 21 12 11 40 40 H 1.08996 * 109.68174 * 66.35764 * 21 12 11 41 41 H 1.09000 * 109.49621 * 298.56344 * 22 9 8 42 42 H 1.09005 * 109.49792 * 58.65960 * 22 9 8 43 43 H 1.08002 * 119.65967 * 180.26625 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0182 2.5519 0.0011 6 6 3.2079 3.6721 0.0016 7 6 3.8344 5.0427 0.0027 8 7 3.9287 5.5392 -1.3766 9 6 4.5366 6.8759 -1.4147 10 6 5.1822 7.1038 -2.7833 11 6 5.8449 8.4847 -2.8075 12 7 4.8469 9.4978 -2.4380 13 6 4.6161 10.5776 -3.2478 14 1 4.7945 10.5037 -4.3103 15 6 4.1526 11.7673 -2.7029 16 7 4.2539 11.9817 -1.4083 17 14 3.3851 13.0639 -3.8072 18 1 3.3889 12.5827 -5.2121 19 1 1.9872 13.3176 -3.3751 20 1 4.1686 14.3217 -3.7123 21 6 4.1001 9.3244 -1.1813 22 6 3.4570 7.9340 -1.1755 23 7 1.8944 3.5574 0.0065 24 6 1.3002 2.3805 0.0009 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0433 0.4030 0.0005 29 1 5.0932 2.6551 0.0011 30 1 4.8324 4.9856 0.4373 31 1 3.2197 5.7227 0.5924 32 1 4.4398 4.8932 -1.9594 33 1 5.2971 6.9510 -0.6374 34 1 4.4180 7.0534 -3.5589 35 1 5.9347 6.3359 -2.9630 36 1 6.6693 8.5069 -2.0947 37 1 6.2220 8.6916 -3.8090 38 1 3.9304 12.8133 -1.0276 39 1 3.3238 10.0862 -1.1104 40 1 4.7803 9.4159 -0.3345 41 1 2.7091 7.8758 -1.9662 42 1 2.9816 7.7571 -0.2106 43 1 0.2215 2.3264 0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892910242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:01 Heat of formation + Delta-G solvation = 22.039244 kcal Electronic energy + Delta-G solvation = -22732.780517 eV Core-core repulsion = 19392.873001 eV Total energy + Delta-G solvation = -3339.907516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87464 -38.66133 -37.83046 -35.11436 -32.63356 -32.54363 -30.92328 -29.85103 -29.00817 -27.86800 -25.76523 -24.17930 -23.50184 -22.29396 -21.74639 -21.07801 -19.03135 -18.45972 -17.29495 -16.76222 -16.23969 -16.19562 -15.21320 -14.90098 -14.65272 -14.51818 -14.20827 -13.90474 -13.47437 -13.43958 -13.36819 -13.03024 -12.79441 -12.29328 -12.19647 -12.10411 -11.82439 -11.68207 -11.26676 -10.97097 -10.80356 -10.68098 -10.17057 -10.13265 -9.94001 -9.85419 -9.55161 -9.49165 -9.44645 -8.61595 -8.43059 -8.09209 -6.62233 -5.73232 -3.14429 0.88784 1.07663 2.83846 3.41459 3.49211 3.51666 3.53024 4.16074 4.39050 4.42772 4.54872 4.61822 4.74482 4.76515 4.85090 5.06877 5.16019 5.30679 5.35843 5.44335 5.49625 5.51392 5.64650 5.78415 5.83388 5.93744 5.96472 6.18410 6.27596 6.38814 6.47292 6.65258 6.70816 6.82030 6.86073 6.88597 7.04230 7.39019 7.48125 7.64239 7.75880 7.85893 7.87982 8.50753 9.26915 9.90818 10.47883 11.35577 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032871 B = 0.002712 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.620496 B =10320.505449 C =10682.969790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.315 6.315 3 C 0.068 3.932 4 C -0.108 4.108 5 C -0.128 4.128 6 C 0.104 3.896 7 C 0.112 3.888 8 N -0.678 5.678 9 C 0.097 3.903 10 C -0.133 4.133 11 C 0.148 3.852 12 N -0.592 5.592 13 C -0.249 4.249 14 H 0.066 0.934 15 C 0.000 4.000 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.291 1.291 21 C 0.169 3.831 22 C -0.124 4.124 23 N -0.427 5.427 24 C 0.022 3.978 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.332 0.668 33 H 0.037 0.963 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.015 0.985 37 H 0.054 0.946 38 H 0.252 0.748 39 H 0.088 0.912 40 H 0.015 0.985 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 -23.488 4.473 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.021 3.979 4 C -0.135 4.135 5 C -0.149 4.149 6 C -0.035 4.035 7 C -0.018 4.018 8 N -0.310 5.310 9 C -0.011 4.011 10 C -0.172 4.172 11 C 0.021 3.979 12 N -0.315 5.315 13 C -0.378 4.378 14 H 0.083 0.917 15 C -0.198 4.198 16 N -0.548 5.548 17 Si 0.731 3.269 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.218 1.218 21 C 0.043 3.957 22 C -0.164 4.164 23 N -0.136 5.136 24 C -0.137 4.137 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.159 0.841 29 H 0.158 0.842 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.150 0.850 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.107 0.893 40 H 0.033 0.967 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.443 -22.531 4.554 23.412 hybrid contribution 0.717 -0.296 -0.280 0.825 sum -3.725 -22.826 4.275 23.520 Atomic orbital electron populations 1.23119 0.77973 1.04266 1.01750 1.86059 1.21688 1.26200 1.88740 1.20093 0.93293 0.85744 0.98814 1.20877 0.91656 0.98751 1.02181 1.21892 1.01435 0.91800 0.99742 1.21162 0.89008 0.95554 0.97748 1.20771 0.98046 0.90816 0.92123 1.60585 1.57955 1.04194 1.08237 1.21508 0.95188 0.87428 0.96982 1.22212 0.99421 0.98969 0.96629 1.20848 0.91079 0.87704 0.98280 1.44134 1.40611 1.23375 1.23394 1.19226 1.40036 0.88937 0.89622 0.91676 1.25025 1.02058 0.96819 0.95906 1.70044 1.49095 1.25060 1.10630 0.86240 0.78992 0.81486 0.80161 1.20281 1.21571 1.21815 1.20862 0.95424 0.92415 0.86981 1.22186 0.97554 0.96404 1.00206 1.67405 1.11802 1.26024 1.08413 1.22953 1.00534 0.87094 1.03069 0.92357 0.92282 0.87975 0.84134 0.84200 0.93878 0.89125 0.85008 0.94541 0.91491 0.93541 0.96688 0.92722 0.93753 0.89340 0.96695 0.92078 0.93536 0.82619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.13 16 2 O -0.31 -2.92 10.51 -19.46 -0.20 -3.13 16 3 C 0.07 0.71 6.71 -39.08 -0.26 0.45 16 4 C -0.11 -1.06 10.13 -39.14 -0.40 -1.45 16 5 C -0.13 -1.31 9.71 -39.46 -0.38 -1.69 16 6 C 0.10 1.33 6.29 -82.58 -0.52 0.81 16 7 C 0.11 1.49 5.79 -4.98 -0.03 1.47 16 8 N -0.68 -10.16 6.30 -107.95 -0.68 -10.84 16 9 C 0.10 1.69 2.46 -67.67 -0.17 1.52 16 10 C -0.13 -2.33 5.36 -26.61 -0.14 -2.48 16 11 C 0.15 3.14 6.51 -3.71 -0.02 3.12 16 12 N -0.59 -15.16 3.01 -172.09 -0.52 -15.68 16 13 C -0.25 -6.96 9.59 -15.06 -0.14 -7.10 16 14 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 15 C 0.00 0.00 4.92 -17.43 -0.09 -0.08 16 16 N -0.90 -26.68 11.18 55.49 0.62 -26.06 16 17 Si 0.90 22.09 29.59 -169.99 -5.03 17.06 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 C 0.17 4.15 5.33 -3.55 -0.02 4.13 16 22 C -0.12 -2.51 5.59 -26.61 -0.15 -2.66 16 23 N -0.43 -5.95 10.27 -9.35 -0.10 -6.05 16 24 C 0.02 0.25 10.22 -17.37 -0.18 0.08 16 25 H 0.06 0.28 7.68 -51.93 -0.40 -0.12 16 26 H 0.06 0.30 7.68 -51.93 -0.40 -0.10 16 27 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 29 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.04 0.50 7.95 -51.93 -0.41 0.09 16 31 H 0.09 1.34 7.41 -51.93 -0.38 0.96 16 32 H 0.33 4.47 8.32 -39.29 -0.33 4.14 16 33 H 0.04 0.64 7.80 -51.93 -0.40 0.23 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 38 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.09 2.44 6.04 -51.93 -0.31 2.12 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.05 0.89 7.42 -51.93 -0.39 0.50 16 43 H 0.16 1.38 6.32 -52.49 -0.33 1.05 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -32.16 346.27 -8.89 -41.05 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.70 Total: 1.20 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.51 Total: -2.77 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.67 Total: -58.63 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: -0.20 Total: -3.13 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.16 -8.89 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892910242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.093 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds