Wall clock time and date at job start Tue Mar 31 2020 07:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35912 * 116.99821 * 2 1 4 4 C 1.39133 * 120.47185 * 179.97438 * 3 2 1 5 5 C 1.38543 * 118.37756 * 180.02562 * 4 3 2 6 6 C 1.38253 * 119.21528 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.55567 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47201 * 94.99526 * 7 6 5 9 9 C 1.46897 * 111.00439 * 180.02562 * 8 7 6 10 10 C 1.53034 * 109.46478 * 155.00165 * 9 8 7 11 11 C 1.53194 * 109.31631 * 181.38805 * 10 9 8 12 12 N 1.46928 * 108.88836 * 305.29172 * 11 10 9 13 13 C 1.36934 * 120.63084 * 233.67060 * 12 11 10 14 14 H 1.07993 * 120.00334 * 27.39912 * 13 12 11 15 15 C 1.38820 * 119.99795 * 207.39526 * 13 12 11 16 16 N 1.31613 * 120.00097 * 17.26991 * 15 13 12 17 17 Si 1.86807 * 119.99669 * 197.26997 * 15 13 12 18 18 H 1.48498 * 109.47115 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46875 * 120.00003 * 17 15 13 20 20 H 1.48497 * 109.47091 * 240.00248 * 17 15 13 21 21 C 1.47211 * 118.55611 * 53.54535 * 12 11 10 22 22 C 1.53045 * 109.46059 * 275.07233 * 9 8 7 23 23 N 1.31851 * 120.89020 * 0.25218 * 6 5 4 24 24 C 1.31841 * 121.77765 * 359.47447 * 23 6 5 25 25 H 1.08994 * 109.47275 * 299.99825 * 1 2 3 26 26 H 1.08998 * 109.46997 * 60.00182 * 1 2 3 27 27 H 1.09001 * 109.46688 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.81872 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.38903 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.46841 * 335.00362 * 7 6 5 31 31 H 1.08995 * 109.47570 * 214.99718 * 7 6 5 32 32 H 1.00898 * 111.00545 * 303.96106 * 8 7 6 33 33 H 1.08998 * 109.44622 * 35.03339 * 9 8 7 34 34 H 1.08997 * 109.49513 * 61.43676 * 10 9 8 35 35 H 1.09004 * 109.49828 * 301.33903 * 10 9 8 36 36 H 1.09000 * 109.58642 * 65.14938 * 11 10 9 37 37 H 1.09000 * 109.58560 * 185.43802 * 11 10 9 38 38 H 0.97008 * 119.99917 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.53679 * 186.67414 * 21 12 11 40 40 H 1.08996 * 109.68174 * 66.35764 * 21 12 11 41 41 H 1.09000 * 109.49621 * 298.56344 * 22 9 8 42 42 H 1.09005 * 109.49792 * 58.65960 * 22 9 8 43 43 H 1.08002 * 119.65967 * 180.26625 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0182 2.5519 0.0011 6 6 3.2079 3.6721 0.0016 7 6 3.8344 5.0427 0.0027 8 7 3.9287 5.5392 -1.3766 9 6 4.5366 6.8759 -1.4147 10 6 5.1822 7.1038 -2.7833 11 6 5.8449 8.4847 -2.8075 12 7 4.8469 9.4978 -2.4380 13 6 4.6161 10.5776 -3.2478 14 1 4.7945 10.5037 -4.3103 15 6 4.1526 11.7673 -2.7029 16 7 4.2539 11.9817 -1.4083 17 14 3.3851 13.0639 -3.8072 18 1 3.3889 12.5827 -5.2121 19 1 1.9872 13.3176 -3.3751 20 1 4.1686 14.3217 -3.7123 21 6 4.1001 9.3244 -1.1813 22 6 3.4570 7.9340 -1.1755 23 7 1.8944 3.5574 0.0065 24 6 1.3002 2.3805 0.0009 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0433 0.4030 0.0005 29 1 5.0932 2.6551 0.0011 30 1 4.8324 4.9856 0.4373 31 1 3.2197 5.7227 0.5924 32 1 4.4398 4.8932 -1.9594 33 1 5.2971 6.9510 -0.6374 34 1 4.4180 7.0534 -3.5589 35 1 5.9347 6.3359 -2.9630 36 1 6.6693 8.5069 -2.0947 37 1 6.2220 8.6916 -3.8090 38 1 3.9304 12.8133 -1.0276 39 1 3.3238 10.0862 -1.1104 40 1 4.7803 9.4159 -0.3345 41 1 2.7091 7.8758 -1.9662 42 1 2.9816 7.7571 -0.2106 43 1 0.2215 2.3264 0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892910242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:00 Heat of formation + Delta-G solvation = -0.114841 kcal Electronic energy + Delta-G solvation = -22733.741190 eV Core-core repulsion = 19392.873001 eV Total energy + Delta-G solvation = -3340.868189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64839 -39.71624 -39.08657 -36.63809 -34.22710 -33.41384 -32.34115 -31.57630 -30.40950 -28.46723 -27.15864 -25.78472 -24.30277 -23.82989 -23.09935 -22.43075 -20.71842 -19.13835 -18.70124 -18.07416 -17.33285 -16.83412 -16.78127 -16.17607 -15.97736 -15.64430 -15.29174 -15.15852 -15.09526 -14.78131 -14.42898 -14.35922 -13.94928 -13.74347 -13.46487 -13.20234 -12.96884 -12.81517 -12.69285 -12.58102 -12.39759 -12.34028 -11.99332 -11.92643 -11.75371 -11.27211 -11.12628 -10.70770 -10.54766 -10.36179 -9.45106 -9.25773 -8.68536 -7.86742 -5.30831 0.09555 0.28525 1.45847 1.48049 1.58575 2.23617 2.51970 2.66446 3.23712 3.30931 3.45722 3.66212 3.71345 3.79421 3.98002 4.02031 4.16693 4.32401 4.37391 4.41184 4.45690 4.53058 4.57633 4.60157 4.71354 4.74618 4.77620 4.89306 4.98171 5.00211 5.07632 5.10226 5.14402 5.24343 5.42456 5.50865 5.55013 5.65996 5.76901 6.11729 6.21459 6.39921 6.55529 7.04492 7.15388 7.87263 8.39339 9.20313 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.032871 B = 0.002712 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.620496 B =10320.505449 C =10682.969790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.069 3.931 4 C -0.112 4.112 5 C -0.119 4.119 6 C 0.082 3.918 7 C 0.116 3.884 8 N -0.682 5.682 9 C 0.109 3.891 10 C -0.119 4.119 11 C 0.142 3.858 12 N -0.612 5.612 13 C -0.260 4.260 14 H 0.067 0.933 15 C -0.054 4.054 16 N -0.936 5.936 17 Si 0.966 3.034 18 H -0.266 1.266 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.178 3.822 22 C -0.110 4.110 23 N -0.465 5.465 24 C 0.008 3.992 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.125 0.875 28 H 0.165 0.835 29 H 0.168 0.832 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.346 0.654 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.017 0.983 37 H 0.057 0.943 38 H 0.249 0.751 39 H 0.051 0.949 40 H -0.003 1.003 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.823 -26.031 3.848 26.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.021 3.979 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.056 4.056 7 C -0.013 4.013 8 N -0.315 5.315 9 C 0.000 4.000 10 C -0.158 4.158 11 C 0.016 3.984 12 N -0.336 5.336 13 C -0.390 4.390 14 H 0.085 0.915 15 C -0.249 4.249 16 N -0.582 5.582 17 Si 0.794 3.206 18 H -0.191 1.191 19 H -0.218 1.218 20 H -0.217 1.217 21 C 0.052 3.948 22 C -0.149 4.149 23 N -0.175 5.175 24 C -0.150 4.150 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.143 0.857 28 H 0.183 0.817 29 H 0.185 0.815 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.166 0.834 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.015 0.985 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.939 -25.121 3.913 25.727 hybrid contribution 0.536 0.379 -0.059 0.660 sum -3.403 -24.742 3.853 25.270 Atomic orbital electron populations 1.23407 0.76182 1.06029 1.02358 1.86056 1.23589 1.25556 1.88401 1.20231 0.93838 0.85897 0.97904 1.21234 0.91706 0.99542 1.01319 1.22107 1.02546 0.91010 0.98224 1.21124 0.89092 0.95806 0.99596 1.20721 0.98890 0.90956 0.90779 1.60372 1.57969 1.03335 1.09788 1.21224 0.93889 0.87908 0.96979 1.22031 0.99833 0.97636 0.96309 1.21039 0.90554 0.88513 0.98263 1.44403 1.42031 1.23866 1.23275 1.19553 1.39565 0.89744 0.90120 0.91545 1.25799 1.02939 0.98985 0.97200 1.70192 1.50294 1.25487 1.12275 0.85221 0.77614 0.78806 0.78911 1.19067 1.21827 1.21734 1.20619 0.94060 0.93790 0.86337 1.21936 0.97863 0.95190 0.99948 1.67318 1.12856 1.27564 1.09723 1.23188 1.01428 0.86909 1.03475 0.91619 0.91821 0.85701 0.81736 0.81474 0.91650 0.91333 0.83442 0.94120 0.92643 0.89498 0.96468 0.92496 0.94159 0.93078 0.98460 0.93863 0.92833 0.81206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.82 113.37 1.11 1.25 16 2 O -0.32 -5.33 10.51 -92.56 -0.97 -6.30 16 3 C 0.07 1.32 6.71 22.60 0.15 1.48 16 4 C -0.11 -1.88 10.13 22.56 0.23 -1.65 16 5 C -0.12 -2.09 9.71 22.35 0.22 -1.87 16 6 C 0.08 1.97 6.29 42.56 0.27 2.24 16 7 C 0.12 2.91 5.79 85.56 0.50 3.41 16 8 N -0.68 -19.13 6.30 -495.46 -3.12 -22.25 16 9 C 0.11 3.62 2.46 44.94 0.11 3.73 16 10 C -0.12 -3.93 5.36 30.67 0.16 -3.76 16 11 C 0.14 5.90 6.51 86.36 0.56 6.47 16 12 N -0.61 -31.76 3.01 -698.36 -2.10 -33.86 16 13 C -0.26 -14.72 9.59 84.04 0.81 -13.92 16 14 H 0.07 3.67 7.88 -2.91 -0.02 3.64 16 15 C -0.05 -3.12 4.92 84.86 0.42 -2.70 16 16 N -0.94 -56.99 11.18 21.65 0.24 -56.75 16 17 Si 0.97 46.16 29.59 68.60 2.03 48.19 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 20 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 21 C 0.18 9.02 5.33 86.31 0.46 9.48 16 22 C -0.11 -4.51 5.59 30.67 0.17 -4.34 16 23 N -0.46 -12.66 10.27 -183.48 -1.88 -14.54 16 24 C 0.01 0.18 10.22 84.80 0.87 1.05 16 25 H 0.07 0.51 7.68 -2.39 -0.02 0.49 16 26 H 0.06 0.53 7.68 -2.39 -0.02 0.52 16 27 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 29 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 30 H 0.07 1.35 7.95 -2.39 -0.02 1.33 16 31 H 0.07 2.01 7.41 -2.39 -0.02 2.00 16 32 H 0.35 8.25 8.32 -89.70 -0.75 7.50 16 33 H 0.04 1.34 7.80 -2.39 -0.02 1.32 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 2.22 8.10 -2.39 -0.02 2.20 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 38 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 39 H 0.05 2.95 6.04 -2.39 -0.01 2.93 16 40 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.04 1.91 8.14 -2.39 -0.02 1.90 16 42 H 0.05 2.09 7.42 -2.38 -0.02 2.07 16 43 H 0.17 2.89 6.32 -2.91 -0.02 2.87 16 Total: -1.00 -71.05 346.27 0.48 -70.57 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.26 Total: 14.08 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 6.03 Total: 0.85 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -6.86 Total: -127.39 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.97 Total: -6.30 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -71.05 0.48 -70.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892910242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.454 kcal (2) G-P(sol) polarization free energy of solvation -71.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds