Wall clock time and date at job start Tue Mar 31 2020 07:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.46795 * 2 1 4 4 C 1.42901 * 113.99504 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46973 * 179.97438 * 4 3 2 6 6 N 1.31790 * 119.08233 * 269.98235 * 5 4 3 7 7 C 1.32552 * 121.00868 * 179.97438 * 6 5 4 8 8 C 1.50702 * 120.40002 * 180.02562 * 7 6 5 9 9 C 1.38117 * 119.19961 * 359.74154 * 7 6 5 10 10 C 1.39619 * 118.33054 * 0.51810 * 9 7 6 11 11 N 1.38541 * 120.52969 * 179.76224 * 10 9 7 12 12 C 1.46501 * 120.00201 * 359.71673 * 11 10 9 13 13 C 1.53000 * 109.47141 * 186.13983 * 12 11 10 14 14 C 1.50695 * 115.56321 * 39.53658 * 13 12 11 15 15 H 1.08006 * 120.00058 * 260.42733 * 14 13 12 16 16 C 1.37879 * 120.00490 * 80.42354 * 14 13 12 17 17 N 1.31519 * 119.99665 * 351.85452 * 16 14 13 18 18 Si 1.86793 * 120.00462 * 171.85735 * 16 14 13 19 19 H 1.48502 * 109.46892 * 59.99819 * 18 16 14 20 20 H 1.48494 * 109.47342 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47187 * 300.00147 * 18 16 14 22 22 C 1.53003 * 117.49760 * 185.22125 * 13 12 11 23 23 C 1.53002 * 60.03254 * 107.47795 * 22 13 12 24 24 N 1.31745 * 119.08495 * 89.99640 * 5 4 3 25 25 H 1.09002 * 109.47283 * 60.00001 * 1 2 3 26 26 H 1.09003 * 109.47221 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47661 * 300.00166 * 1 2 3 28 28 H 1.08992 * 109.47288 * 239.99723 * 2 1 3 29 29 H 1.08998 * 109.47039 * 119.99563 * 2 1 3 30 30 H 1.09001 * 109.46993 * 60.00362 * 4 3 2 31 31 H 1.08998 * 109.47250 * 299.99547 * 4 3 2 32 32 H 1.09010 * 109.47223 * 89.99759 * 8 7 6 33 33 H 1.08998 * 109.47468 * 209.99712 * 8 7 6 34 34 H 1.08998 * 109.47435 * 329.99972 * 8 7 6 35 35 H 1.07998 * 120.83297 * 180.25392 * 9 7 6 36 36 H 0.97006 * 119.99905 * 179.71934 * 11 10 9 37 37 H 1.08994 * 109.46923 * 66.14335 * 12 11 10 38 38 H 1.08999 * 109.47312 * 306.14321 * 12 11 10 39 39 H 0.96997 * 120.00431 * 185.03498 * 17 16 14 40 40 H 1.08995 * 117.49806 * 214.97971 * 22 13 12 41 41 H 1.08998 * 117.49676 * 359.97438 * 22 13 12 42 42 H 1.09000 * 117.49359 * 107.49647 * 23 22 13 43 43 H 1.08997 * 117.50160 * 252.52447 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9162 -0.0001 6 7 3.9854 3.5343 -1.1521 7 6 4.3266 4.8144 -1.1973 8 6 4.5123 5.5078 -2.5223 9 6 4.5040 5.5066 -0.0153 10 6 4.3258 4.8204 1.1875 11 7 4.4970 5.4688 2.3997 12 6 4.8741 6.8842 2.4265 13 6 5.1460 7.3124 3.8700 14 6 5.8732 6.3037 4.7214 15 1 5.3212 5.6776 5.4068 16 6 7.2430 6.1802 4.6255 17 7 7.8969 6.8234 3.6829 18 14 8.1703 5.0991 5.8340 19 1 7.6759 3.7027 5.7293 20 1 9.6209 5.1351 5.5183 21 1 7.9512 5.5995 7.2149 22 6 5.4369 8.7927 4.1249 23 6 4.0974 8.1918 4.5557 24 7 3.9839 3.5357 1.1509 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8339 0.9765 -0.8892 31 1 3.8332 0.9768 0.8908 32 1 3.5639 5.9396 -2.8426 33 1 5.2547 6.2990 -2.4176 34 1 4.8523 4.7866 -3.2654 35 1 4.7780 6.5512 -0.0213 36 1 4.3672 4.9857 3.2308 37 1 4.0620 7.4844 2.0164 38 1 5.7731 7.0321 1.8282 39 1 8.8494 6.6801 3.5690 40 1 6.1542 9.0370 4.9084 41 1 5.4350 9.4614 3.2642 42 1 3.9335 8.0408 5.6227 43 1 3.2143 8.4649 3.9782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893648675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:08 Heat of formation + Delta-G solvation = 19.054837 kcal Electronic energy + Delta-G solvation = -22932.833797 eV Core-core repulsion = 19592.796867 eV Total energy + Delta-G solvation = -3340.036930 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52857 -37.96539 -37.25725 -35.03659 -33.74295 -32.10149 -31.60899 -30.58783 -28.19906 -26.88496 -26.08597 -25.26002 -22.85084 -21.72970 -21.51202 -21.15423 -19.45400 -17.64803 -16.79817 -16.35342 -16.07499 -15.78821 -15.00281 -14.82448 -14.67448 -14.55983 -14.22010 -13.52968 -13.40983 -13.13776 -13.03099 -12.79709 -12.65599 -12.27805 -12.20354 -12.10959 -11.66856 -11.44399 -11.26289 -11.10779 -11.00347 -10.62783 -10.52816 -10.24536 -10.20646 -9.71647 -9.63195 -9.23708 -9.01747 -8.72563 -8.59684 -8.28324 -7.36421 -6.18291 -4.26195 1.40505 1.90962 3.23465 3.28687 3.31431 3.48705 3.77596 4.29404 4.32640 4.54365 4.72908 4.95162 5.08288 5.09613 5.14307 5.25565 5.28006 5.34473 5.46476 5.58585 5.58769 5.66016 5.70113 5.80809 5.88030 5.92152 6.00084 6.07818 6.13827 6.21639 6.31508 6.35341 6.57934 6.65925 6.85338 6.93145 7.14813 7.19696 7.29660 7.39171 7.72958 7.96983 8.22811 8.38563 8.74911 8.81657 9.41742 10.89531 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.004075 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.440214 B = 6869.954318 C = 7528.059109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.380 6.380 4 C 0.140 3.860 5 C 0.359 3.641 6 N -0.565 5.565 7 C 0.192 3.808 8 C -0.100 4.100 9 C -0.293 4.293 10 C 0.446 3.554 11 N -0.666 5.666 12 C 0.165 3.835 13 C 0.031 3.969 14 C -0.505 4.505 15 H 0.061 0.939 16 C 0.080 3.920 17 N -0.872 5.872 18 Si 0.890 3.110 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.155 4.155 23 C -0.209 4.209 24 N -0.574 5.574 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.139 0.861 36 H 0.413 0.587 37 H 0.035 0.965 38 H 0.072 0.928 39 H 0.263 0.737 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.255 -6.610 -9.268 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.298 6.298 4 C 0.062 3.938 5 C 0.087 3.913 6 N -0.288 5.288 7 C 0.051 3.949 8 C -0.157 4.157 9 C -0.322 4.322 10 C 0.199 3.801 11 N -0.293 5.293 12 C 0.041 3.959 13 C 0.030 3.970 14 C -0.543 4.543 15 H 0.079 0.921 16 C -0.125 4.125 17 N -0.508 5.508 18 Si 0.717 3.283 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.193 4.193 23 C -0.246 4.246 24 N -0.301 5.301 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.157 0.843 36 H 0.251 0.749 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.348 -7.018 -9.250 14.301 hybrid contribution 1.097 0.040 1.073 1.535 sum -7.251 -6.978 -8.177 12.967 Atomic orbital electron populations 1.21733 0.93809 1.02013 1.03229 1.22456 0.95548 0.83664 1.00141 1.87940 1.19935 1.26442 1.95479 1.20828 0.82044 0.89245 1.01683 1.22012 0.90745 0.95281 0.83223 1.67923 1.20963 1.10263 1.29656 1.21201 0.89215 0.89290 0.95156 1.20678 1.02648 0.99857 0.92519 1.21947 1.14871 1.02972 0.92406 1.18623 0.86315 0.87628 0.87531 1.44789 1.68618 1.11550 1.04338 1.21044 0.97356 0.78244 0.99242 1.18961 0.96433 0.90689 0.90896 1.20265 0.91176 1.20297 1.22538 0.92070 1.24948 0.97480 0.94986 0.95120 1.69934 1.09234 1.40791 1.30792 0.86687 0.78778 0.80993 0.81811 1.20087 1.21246 1.20067 1.22566 0.97222 0.97904 1.01653 1.23087 0.92265 1.08983 1.00252 1.67662 1.22627 1.09081 1.30764 0.91900 0.91177 0.91805 0.93306 0.93209 0.90943 0.90887 0.90305 0.90508 0.90471 0.84346 0.74851 0.94701 0.91034 0.92742 0.89894 0.91593 0.90240 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 37.16 0.38 -1.01 16 2 C 0.06 0.63 6.66 37.16 0.25 0.87 16 3 O -0.38 -5.74 10.33 -35.23 -0.36 -6.10 16 4 C 0.14 2.09 6.37 36.01 0.23 2.32 16 5 C 0.36 6.65 7.27 -157.24 -1.14 5.50 16 6 N -0.56 -10.20 10.27 -7.07 -0.07 -10.27 16 7 C 0.19 3.23 6.82 -82.32 -0.56 2.67 16 8 C -0.10 -1.20 10.21 36.01 0.37 -0.84 16 9 C -0.29 -5.33 9.04 -39.11 -0.35 -5.68 16 10 C 0.45 9.08 7.71 -154.78 -1.19 7.88 16 11 N -0.67 -13.96 5.43 -60.27 -0.33 -14.28 16 12 C 0.17 3.45 5.09 -4.04 -0.02 3.43 16 13 C 0.03 0.70 1.62 -155.62 -0.25 0.45 16 14 C -0.51 -12.74 7.48 -34.44 -0.26 -13.00 16 15 H 0.06 1.55 7.83 -52.48 -0.41 1.14 16 16 C 0.08 2.07 5.41 -17.82 -0.10 1.97 16 17 N -0.87 -23.36 13.18 55.43 0.73 -22.63 16 18 Si 0.89 20.51 29.55 -169.99 -5.02 15.49 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 22 C -0.16 -3.34 9.78 -26.73 -0.26 -3.61 16 23 C -0.21 -4.21 9.89 -26.69 -0.26 -4.47 16 24 N -0.57 -11.69 10.37 -9.97 -0.10 -11.80 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 33 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.14 2.32 6.83 -52.49 -0.36 1.96 16 36 H 0.41 9.02 7.69 -40.82 -0.31 8.70 16 37 H 0.03 0.66 7.94 -51.93 -0.41 0.25 16 38 H 0.07 1.62 7.66 -51.93 -0.40 1.22 16 39 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 40 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -28.90 364.22 -9.79 -38.69 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.94 Total: 8.91 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -3.18 Total: -3.49 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.23 Total: -58.98 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.36 Total: -6.10 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.90 -9.79 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893648675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.744 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds