Wall clock time and date at job start Tue Mar 31 2020 07:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.46795 * 2 1 4 4 C 1.42901 * 113.99504 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46973 * 179.97438 * 4 3 2 6 6 N 1.31790 * 119.08233 * 269.98235 * 5 4 3 7 7 C 1.32552 * 121.00868 * 179.97438 * 6 5 4 8 8 C 1.50702 * 120.40002 * 180.02562 * 7 6 5 9 9 C 1.38117 * 119.19961 * 359.74154 * 7 6 5 10 10 C 1.39619 * 118.33054 * 0.51810 * 9 7 6 11 11 N 1.38541 * 120.52969 * 179.76224 * 10 9 7 12 12 C 1.46501 * 120.00201 * 359.71673 * 11 10 9 13 13 C 1.53000 * 109.47141 * 186.13983 * 12 11 10 14 14 C 1.50695 * 115.56321 * 39.53658 * 13 12 11 15 15 H 1.08006 * 120.00058 * 260.42733 * 14 13 12 16 16 C 1.37879 * 120.00490 * 80.42354 * 14 13 12 17 17 N 1.31519 * 119.99665 * 351.85452 * 16 14 13 18 18 Si 1.86793 * 120.00462 * 171.85735 * 16 14 13 19 19 H 1.48502 * 109.46892 * 59.99819 * 18 16 14 20 20 H 1.48494 * 109.47342 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47187 * 300.00147 * 18 16 14 22 22 C 1.53003 * 117.49760 * 185.22125 * 13 12 11 23 23 C 1.53002 * 60.03254 * 107.47795 * 22 13 12 24 24 N 1.31745 * 119.08495 * 89.99640 * 5 4 3 25 25 H 1.09002 * 109.47283 * 60.00001 * 1 2 3 26 26 H 1.09003 * 109.47221 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47661 * 300.00166 * 1 2 3 28 28 H 1.08992 * 109.47288 * 239.99723 * 2 1 3 29 29 H 1.08998 * 109.47039 * 119.99563 * 2 1 3 30 30 H 1.09001 * 109.46993 * 60.00362 * 4 3 2 31 31 H 1.08998 * 109.47250 * 299.99547 * 4 3 2 32 32 H 1.09010 * 109.47223 * 89.99759 * 8 7 6 33 33 H 1.08998 * 109.47468 * 209.99712 * 8 7 6 34 34 H 1.08998 * 109.47435 * 329.99972 * 8 7 6 35 35 H 1.07998 * 120.83297 * 180.25392 * 9 7 6 36 36 H 0.97006 * 119.99905 * 179.71934 * 11 10 9 37 37 H 1.08994 * 109.46923 * 66.14335 * 12 11 10 38 38 H 1.08999 * 109.47312 * 306.14321 * 12 11 10 39 39 H 0.96997 * 120.00431 * 185.03498 * 17 16 14 40 40 H 1.08995 * 117.49806 * 214.97971 * 22 13 12 41 41 H 1.08998 * 117.49676 * 359.97438 * 22 13 12 42 42 H 1.09000 * 117.49359 * 107.49647 * 23 22 13 43 43 H 1.08997 * 117.50160 * 252.52447 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9162 -0.0001 6 7 3.9854 3.5343 -1.1521 7 6 4.3266 4.8144 -1.1973 8 6 4.5123 5.5078 -2.5223 9 6 4.5040 5.5066 -0.0153 10 6 4.3258 4.8204 1.1875 11 7 4.4970 5.4688 2.3997 12 6 4.8741 6.8842 2.4265 13 6 5.1460 7.3124 3.8700 14 6 5.8732 6.3037 4.7214 15 1 5.3212 5.6776 5.4068 16 6 7.2430 6.1802 4.6255 17 7 7.8969 6.8234 3.6829 18 14 8.1703 5.0991 5.8340 19 1 7.6759 3.7027 5.7293 20 1 9.6209 5.1351 5.5183 21 1 7.9512 5.5995 7.2149 22 6 5.4369 8.7927 4.1249 23 6 4.0974 8.1918 4.5557 24 7 3.9839 3.5357 1.1509 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8339 0.9765 -0.8892 31 1 3.8332 0.9768 0.8908 32 1 3.5639 5.9396 -2.8426 33 1 5.2547 6.2990 -2.4176 34 1 4.8523 4.7866 -3.2654 35 1 4.7780 6.5512 -0.0213 36 1 4.3672 4.9857 3.2308 37 1 4.0620 7.4844 2.0164 38 1 5.7731 7.0321 1.8282 39 1 8.8494 6.6801 3.5690 40 1 6.1542 9.0370 4.9084 41 1 5.4350 9.4614 3.2642 42 1 3.9335 8.0408 5.6227 43 1 3.2143 8.4649 3.9782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893648675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:07 Heat of formation + Delta-G solvation = 2.834409 kcal Electronic energy + Delta-G solvation = -22933.537167 eV Core-core repulsion = 19592.796867 eV Total energy + Delta-G solvation = -3340.740300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.92636 -39.15139 -38.79466 -36.56757 -35.03696 -34.05067 -32.72681 -31.77947 -29.33886 -28.15709 -27.82906 -27.01253 -23.66583 -23.08289 -22.99020 -22.72610 -21.21303 -19.15123 -18.05338 -17.80616 -17.53126 -16.84779 -16.68634 -16.29206 -16.07330 -16.02559 -15.78831 -15.07320 -14.71671 -14.36720 -14.30521 -14.10719 -13.78441 -13.53069 -13.41252 -13.17717 -13.06801 -12.98948 -12.86197 -12.44340 -12.29921 -12.20331 -12.08262 -11.79843 -11.62635 -11.46006 -10.87073 -10.62462 -10.59522 -10.49612 -10.16962 -10.01069 -8.90849 -8.15307 -6.25780 0.03243 0.47404 1.38182 1.40368 1.45511 2.14903 2.38713 2.47539 3.00216 3.13670 3.33210 3.45739 3.48908 3.86927 4.12965 4.18994 4.20914 4.30304 4.36203 4.39515 4.48628 4.51654 4.53311 4.60229 4.65605 4.68567 4.79960 4.86660 4.91489 4.99686 5.02236 5.05368 5.09974 5.24134 5.27310 5.41243 5.56688 5.61742 5.72996 5.89275 6.18505 6.32048 6.49629 6.76907 6.79547 7.36609 7.43225 8.91217 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.004075 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.440214 B = 6869.954318 C = 7528.059109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 O -0.407 6.407 4 C 0.143 3.857 5 C 0.345 3.655 6 N -0.570 5.570 7 C 0.191 3.809 8 C -0.096 4.096 9 C -0.303 4.303 10 C 0.425 3.575 11 N -0.676 5.676 12 C 0.182 3.818 13 C 0.004 3.996 14 C -0.509 4.509 15 H 0.052 0.948 16 C 0.039 3.961 17 N -0.896 5.896 18 Si 0.938 3.062 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.271 1.271 22 C -0.157 4.157 23 C -0.186 4.186 24 N -0.598 5.598 25 H 0.057 0.943 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.150 0.850 36 H 0.405 0.595 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.259 0.741 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.160 -7.042 -10.488 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.326 6.326 4 C 0.065 3.935 5 C 0.074 3.926 6 N -0.293 5.293 7 C 0.050 3.950 8 C -0.153 4.153 9 C -0.332 4.332 10 C 0.180 3.820 11 N -0.303 5.303 12 C 0.057 3.943 13 C 0.003 3.997 14 C -0.547 4.547 15 H 0.070 0.930 16 C -0.163 4.163 17 N -0.533 5.533 18 Si 0.765 3.235 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.195 4.195 23 C -0.223 4.223 24 N -0.326 5.326 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.168 0.832 36 H 0.241 0.759 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.267 -7.461 -10.482 15.856 hybrid contribution 1.306 0.118 1.410 1.926 sum -7.960 -7.343 -9.072 14.128 Atomic orbital electron populations 1.21767 0.92843 1.03572 1.02381 1.22756 0.96351 0.81983 1.01523 1.87900 1.19763 1.29197 1.95720 1.20889 0.82448 0.87242 1.02915 1.22768 0.90133 0.96769 0.82952 1.68074 1.20986 1.10881 1.29318 1.21978 0.87332 0.88993 0.96718 1.20812 1.04235 1.00192 0.90018 1.22152 1.15252 1.03621 0.92180 1.18922 0.87007 0.88146 0.87933 1.44713 1.69729 1.11528 1.04321 1.20809 0.97058 0.78642 0.97747 1.19059 0.98166 0.90692 0.91779 1.20490 0.91416 1.20424 1.22349 0.92967 1.25494 0.98308 0.96211 0.96276 1.70021 1.09041 1.42161 1.32046 0.85930 0.77656 0.79527 0.80411 1.20381 1.21327 1.19663 1.22508 0.97778 0.97506 1.01735 1.23093 0.92358 1.06497 1.00337 1.67686 1.23550 1.09418 1.31957 0.92381 0.88406 0.92989 0.91416 0.92258 0.88874 0.90388 0.88326 0.88843 0.89427 0.83232 0.75856 0.92612 0.93257 0.93158 0.91994 0.89948 0.90384 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 10.28 71.98 0.74 -1.77 16 2 C 0.05 0.98 6.66 71.98 0.48 1.46 16 3 O -0.41 -11.93 10.33 -148.98 -1.54 -13.47 16 4 C 0.14 4.14 6.37 71.24 0.45 4.59 16 5 C 0.34 12.63 7.27 138.77 1.01 13.64 16 6 N -0.57 -19.93 10.27 -176.28 -1.81 -21.74 16 7 C 0.19 6.15 6.82 42.42 0.29 6.44 16 8 C -0.10 -2.05 10.21 71.24 0.73 -1.32 16 9 C -0.30 -10.84 9.04 22.57 0.20 -10.63 16 10 C 0.42 17.42 7.71 133.16 1.03 18.44 16 11 N -0.68 -28.61 5.43 -344.60 -1.87 -30.48 16 12 C 0.18 7.54 5.09 86.38 0.44 7.98 16 13 C 0.00 0.17 1.62 -52.90 -0.09 0.08 16 14 C -0.51 -25.89 7.48 25.60 0.19 -25.70 16 15 H 0.05 2.68 7.83 -2.91 -0.02 2.66 16 16 C 0.04 2.05 5.41 84.65 0.46 2.51 16 17 N -0.90 -48.62 13.18 21.45 0.28 -48.34 16 18 Si 0.94 42.53 29.55 68.60 2.03 44.56 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 C -0.16 -6.66 9.78 30.60 0.30 -6.36 16 23 C -0.19 -7.21 9.89 30.62 0.30 -6.91 16 24 N -0.60 -24.59 10.37 -185.45 -1.92 -26.51 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.09 1.71 8.10 -2.39 -0.02 1.69 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.15 4.87 6.83 -2.91 -0.02 4.85 16 36 H 0.40 18.09 7.69 -92.70 -0.71 17.38 16 37 H 0.06 2.05 7.94 -2.39 -0.02 2.03 16 38 H 0.05 2.25 7.66 -2.39 -0.02 2.23 16 39 H 0.26 13.74 8.32 -92.71 -0.77 12.97 16 40 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 42 H 0.08 3.03 8.14 -2.39 -0.02 3.02 16 43 H 0.09 3.14 8.08 -2.39 -0.02 3.12 16 Total: -1.00 -62.18 364.22 1.99 -60.20 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: 0.28 Total: 33.32 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 6.54 Total: 2.46 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -5.32 Total: -127.07 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.54 Total: -13.47 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -62.18 1.99 -60.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893648675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.031 kcal (2) G-P(sol) polarization free energy of solvation -62.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds