Wall clock time and date at job start Tue Mar 31 2020 07:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99877 * 2 1 4 4 N 1.46504 * 109.46773 * 125.00278 * 3 2 1 5 5 C 1.46499 * 120.00381 * 90.00257 * 4 3 2 6 6 C 1.50701 * 109.46992 * 269.99655 * 5 4 3 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47294 * 60.00559 * 10 8 6 12 12 H 1.48503 * 109.46954 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47431 * 300.00157 * 10 8 6 14 14 C 1.38546 * 119.99862 * 269.99974 * 4 3 2 15 15 C 1.39663 * 120.53245 * 184.72345 * 14 4 3 16 16 C 1.38073 * 118.33298 * 179.77736 * 15 14 4 17 17 C 1.50699 * 120.40162 * 180.23867 * 16 15 14 18 18 N 1.32580 * 119.20196 * 0.50049 * 16 15 14 19 19 C 1.31764 * 121.01140 * 359.73662 * 18 16 15 20 20 C 1.50693 * 119.08612 * 180.02562 * 19 18 16 21 21 O 1.42904 * 109.47215 * 269.97782 * 20 19 18 22 22 C 1.42901 * 114.00217 * 179.97438 * 21 20 19 23 23 C 1.52996 * 109.47006 * 180.02562 * 22 21 20 24 24 N 1.31783 * 121.83163 * 0.02562 * 19 18 16 25 25 H 1.07994 * 120.00221 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99834 * 179.97438 * 1 2 3 27 27 H 1.08004 * 120.00280 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.46915 * 5.00359 * 3 2 1 29 29 H 1.08994 * 109.47284 * 244.99622 * 3 2 1 30 30 H 1.09002 * 109.47391 * 149.99645 * 5 4 3 31 31 H 1.09001 * 109.46813 * 29.99701 * 5 4 3 32 32 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 33 33 H 1.07999 * 120.83216 * 0.02562 * 15 14 4 34 34 H 1.08996 * 109.47085 * 270.26168 * 17 16 15 35 35 H 1.08998 * 109.46753 * 30.26213 * 17 16 15 36 36 H 1.08997 * 109.47114 * 150.26421 * 17 16 15 37 37 H 1.09000 * 109.47342 * 29.98166 * 20 19 18 38 38 H 1.08999 * 109.47640 * 149.97994 * 20 19 18 39 39 H 1.09003 * 109.47140 * 300.00476 * 22 21 20 40 40 H 1.09000 * 109.46854 * 59.99919 * 22 21 20 41 41 H 1.08997 * 109.46981 * 299.99506 * 23 22 21 42 42 H 1.08994 * 109.47716 * 60.00409 * 23 22 21 43 43 H 1.09000 * 109.47005 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3590 0.8257 0.9695 6 6 4.3926 -0.6438 1.3018 7 1 3.4875 -1.1502 1.6032 8 6 5.5787 -1.3421 1.2202 9 7 6.6807 -0.7257 0.8528 10 14 5.6201 -3.1638 1.6316 11 1 4.7079 -3.8984 0.7185 12 1 7.0040 -3.6769 1.4675 13 1 5.1817 -3.3643 3.0361 14 6 2.5825 1.8359 2.3547 15 6 3.4867 1.9578 3.4121 16 6 3.0291 2.4701 4.6098 17 6 3.9659 2.6269 5.7798 18 7 1.7544 2.8175 4.7199 19 6 0.9247 2.6856 3.7048 20 6 -0.5153 3.0947 3.8776 21 8 -1.2753 1.9775 4.3428 22 6 -2.6620 2.2600 4.5412 23 6 -3.3733 0.9996 5.0374 24 7 1.3192 2.2058 2.5425 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9313 30 1 5.0284 1.3651 1.6395 31 1 4.6809 0.9725 -0.0615 32 1 7.5152 -1.2169 0.7958 33 1 4.5189 1.6626 3.2946 34 1 3.9596 1.7140 6.3752 35 1 4.9753 2.8154 5.4142 36 1 3.6403 3.4649 6.3962 37 1 -0.5782 3.9048 4.6042 38 1 -0.9144 3.4327 2.9213 39 1 -2.7691 3.0527 5.2817 40 1 -3.1058 2.5810 3.5988 41 1 -3.2663 0.2068 4.2971 42 1 -2.9295 0.6791 5.9799 43 1 -4.4311 1.2149 5.1883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893947023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:11 Heat of formation + Delta-G solvation = 23.278972 kcal Electronic energy + Delta-G solvation = -23454.820459 eV Core-core repulsion = 20114.966701 eV Total energy + Delta-G solvation = -3339.853758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.42298 -37.92104 -36.89947 -33.74117 -33.39699 -32.78119 -31.49091 -30.57945 -28.16629 -27.76056 -26.65460 -24.97051 -23.28228 -22.80676 -21.42563 -20.44544 -19.26240 -17.27293 -16.75598 -16.59749 -16.30584 -15.80803 -15.01028 -14.74818 -14.70598 -14.41187 -13.94398 -13.69865 -13.25704 -13.22449 -12.91896 -12.72112 -12.41650 -12.28061 -12.13284 -12.00389 -11.71144 -11.40819 -11.35159 -11.22541 -11.02082 -10.88735 -10.72916 -10.32506 -10.11262 -9.83246 -9.59858 -9.57686 -8.99736 -8.92233 -8.59196 -8.52570 -7.10274 -6.17901 -4.26314 1.57521 2.02940 2.77539 3.23949 3.28463 3.32139 3.56077 3.87392 4.32103 4.46536 4.65312 4.76200 4.98966 5.13256 5.14709 5.30028 5.31882 5.39013 5.50387 5.54517 5.62194 5.69540 5.74139 5.85175 5.85451 5.88013 5.95064 6.05289 6.12581 6.18756 6.23607 6.35793 6.47020 6.83407 7.00003 7.10725 7.17896 7.22189 7.31498 7.48269 7.75363 8.02915 8.13198 8.18766 8.77896 8.93292 9.40811 10.86941 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.004873 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.127037 B = 5744.186274 C = 6440.030668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.149 4.149 3 C 0.157 3.843 4 N -0.570 5.570 5 C 0.249 3.751 6 C -0.533 4.533 7 H 0.061 0.939 8 C 0.066 3.934 9 N -0.893 5.893 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.276 1.276 14 C 0.449 3.551 15 C -0.270 4.270 16 C 0.183 3.817 17 C -0.098 4.098 18 N -0.564 5.564 19 C 0.349 3.651 20 C 0.144 3.856 21 O -0.378 6.378 22 C 0.060 3.940 23 C -0.151 4.151 24 N -0.571 5.571 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.150 0.850 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.382 7.396 4.511 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.168 4.168 3 C 0.034 3.966 4 N -0.278 5.278 5 C 0.130 3.870 6 C -0.572 4.572 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.531 5.531 10 Si 0.724 3.276 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.204 3.796 15 C -0.298 4.298 16 C 0.043 3.957 17 C -0.155 4.155 18 N -0.287 5.287 19 C 0.077 3.923 20 C 0.065 3.935 21 O -0.296 6.296 22 C -0.017 4.017 23 C -0.208 4.208 24 N -0.298 5.298 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.132 0.868 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.874 7.360 4.402 15.469 hybrid contribution 0.915 -1.325 -0.027 1.611 sum -11.958 6.035 4.376 14.091 Atomic orbital electron populations 1.23622 0.95830 1.00850 1.02737 1.23459 0.95888 0.99766 0.97699 1.20411 0.91956 0.95298 0.88970 1.47127 1.14256 1.60429 1.06013 1.19491 0.75122 0.94248 0.98179 1.21472 0.94990 0.94051 1.46704 0.92097 1.24917 0.95304 0.98663 0.94837 1.69905 0.99526 1.36656 1.47062 0.86580 0.77108 0.84778 0.79175 1.20142 1.21084 1.20117 1.18530 0.87797 0.86377 0.86850 1.22178 1.03062 1.10308 0.94293 1.21186 0.90624 0.90022 0.93892 1.20650 0.96980 1.02984 0.94913 1.67875 1.03872 1.24474 1.32451 1.21959 0.94822 0.91190 0.84288 1.20774 0.85025 0.88546 0.99127 1.87979 1.19426 1.34979 1.87196 1.22437 0.81859 0.98087 0.99340 1.21728 0.99204 0.97610 1.02264 1.67668 1.16131 1.20132 1.25911 0.89017 0.89433 0.86834 0.90618 0.90490 0.94277 0.94236 0.92451 0.83277 0.90328 0.90532 0.90758 0.91222 0.91291 0.93425 0.93369 0.91795 0.91876 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.13 14.32 29.01 0.42 -2.71 16 2 C -0.15 -2.75 9.85 -36.02 -0.35 -3.10 16 3 C 0.16 2.91 5.89 -5.19 -0.03 2.88 16 4 N -0.57 -12.17 2.54 -176.40 -0.45 -12.62 16 5 C 0.25 5.95 5.07 -5.19 -0.03 5.92 16 6 C -0.53 -14.01 9.28 -34.44 -0.32 -14.33 16 7 H 0.06 1.66 7.45 -52.49 -0.39 1.27 16 8 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 10 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.45 9.58 7.38 -154.78 -1.14 8.43 16 15 C -0.27 -5.54 9.00 -39.11 -0.35 -5.89 16 16 C 0.18 3.39 6.81 -82.33 -0.56 2.82 16 17 C -0.10 -1.38 10.21 36.01 0.37 -1.02 16 18 N -0.56 -10.74 10.27 -7.07 -0.07 -10.82 16 19 C 0.35 6.59 7.27 -157.23 -1.14 5.44 16 20 C 0.14 2.15 6.37 36.00 0.23 2.38 16 21 O -0.38 -5.95 10.33 -35.23 -0.36 -6.32 16 22 C 0.06 0.66 6.66 37.16 0.25 0.91 16 23 C -0.15 -1.49 10.28 37.16 0.38 -1.11 16 24 N -0.57 -11.56 9.21 -9.96 -0.09 -11.65 16 25 H 0.09 1.40 7.84 -52.49 -0.41 0.99 16 26 H 0.09 1.31 8.06 -52.49 -0.42 0.89 16 27 H 0.11 2.32 7.58 -52.48 -0.40 1.92 16 28 H 0.08 1.33 7.13 -51.93 -0.37 0.96 16 29 H 0.08 1.33 7.89 -51.93 -0.41 0.92 16 30 H 0.04 0.97 6.06 -51.93 -0.31 0.66 16 31 H 0.04 0.98 7.89 -51.93 -0.41 0.57 16 32 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.15 3.14 6.16 -52.49 -0.32 2.81 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -29.88 366.10 -8.94 -38.82 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.81 Total: 2.74 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -2.39 Total: 2.28 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.12 Total: -58.96 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.36 Total: -6.32 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.88 -8.94 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893947023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.096 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds