Wall clock time and date at job start Tue Mar 31 2020 07:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 119.99877 * 2 1 4 4 N 1.46504 * 109.46773 * 125.00278 * 3 2 1 5 5 C 1.46499 * 120.00381 * 90.00257 * 4 3 2 6 6 C 1.50701 * 109.46992 * 269.99655 * 5 4 3 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47294 * 60.00559 * 10 8 6 12 12 H 1.48503 * 109.46954 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47431 * 300.00157 * 10 8 6 14 14 C 1.38546 * 119.99862 * 269.99974 * 4 3 2 15 15 C 1.39663 * 120.53245 * 184.72345 * 14 4 3 16 16 C 1.38073 * 118.33298 * 179.77736 * 15 14 4 17 17 C 1.50699 * 120.40162 * 180.23867 * 16 15 14 18 18 N 1.32580 * 119.20196 * 0.50049 * 16 15 14 19 19 C 1.31764 * 121.01140 * 359.73662 * 18 16 15 20 20 C 1.50693 * 119.08612 * 180.02562 * 19 18 16 21 21 O 1.42904 * 109.47215 * 269.97782 * 20 19 18 22 22 C 1.42901 * 114.00217 * 179.97438 * 21 20 19 23 23 C 1.52996 * 109.47006 * 180.02562 * 22 21 20 24 24 N 1.31783 * 121.83163 * 0.02562 * 19 18 16 25 25 H 1.07994 * 120.00221 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99834 * 179.97438 * 1 2 3 27 27 H 1.08004 * 120.00280 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.46915 * 5.00359 * 3 2 1 29 29 H 1.08994 * 109.47284 * 244.99622 * 3 2 1 30 30 H 1.09002 * 109.47391 * 149.99645 * 5 4 3 31 31 H 1.09001 * 109.46813 * 29.99701 * 5 4 3 32 32 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 33 33 H 1.07999 * 120.83216 * 0.02562 * 15 14 4 34 34 H 1.08996 * 109.47085 * 270.26168 * 17 16 15 35 35 H 1.08998 * 109.46753 * 30.26213 * 17 16 15 36 36 H 1.08997 * 109.47114 * 150.26421 * 17 16 15 37 37 H 1.09000 * 109.47342 * 29.98166 * 20 19 18 38 38 H 1.08999 * 109.47640 * 149.97994 * 20 19 18 39 39 H 1.09003 * 109.47140 * 300.00476 * 22 21 20 40 40 H 1.09000 * 109.46854 * 59.99919 * 22 21 20 41 41 H 1.08997 * 109.46981 * 299.99506 * 23 22 21 42 42 H 1.08994 * 109.47716 * 60.00409 * 23 22 21 43 43 H 1.09000 * 109.47005 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3590 0.8257 0.9695 6 6 4.3926 -0.6438 1.3018 7 1 3.4875 -1.1502 1.6032 8 6 5.5787 -1.3421 1.2202 9 7 6.6807 -0.7257 0.8528 10 14 5.6201 -3.1638 1.6316 11 1 4.7079 -3.8984 0.7185 12 1 7.0040 -3.6769 1.4675 13 1 5.1817 -3.3643 3.0361 14 6 2.5825 1.8359 2.3547 15 6 3.4867 1.9578 3.4121 16 6 3.0291 2.4701 4.6098 17 6 3.9659 2.6269 5.7798 18 7 1.7544 2.8175 4.7199 19 6 0.9247 2.6856 3.7048 20 6 -0.5153 3.0947 3.8776 21 8 -1.2753 1.9775 4.3428 22 6 -2.6620 2.2600 4.5412 23 6 -3.3733 0.9996 5.0374 24 7 1.3192 2.2058 2.5425 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9313 30 1 5.0284 1.3651 1.6395 31 1 4.6809 0.9725 -0.0615 32 1 7.5152 -1.2169 0.7958 33 1 4.5189 1.6626 3.2946 34 1 3.9596 1.7140 6.3752 35 1 4.9753 2.8154 5.4142 36 1 3.6403 3.4649 6.3962 37 1 -0.5782 3.9048 4.6042 38 1 -0.9144 3.4327 2.9213 39 1 -2.7691 3.0527 5.2817 40 1 -3.1058 2.5810 3.5988 41 1 -3.2663 0.2068 4.2971 42 1 -2.9295 0.6791 5.9799 43 1 -4.4311 1.2149 5.1883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893947023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:11 Heat of formation + Delta-G solvation = 7.415311 kcal Electronic energy + Delta-G solvation = -23455.508358 eV Core-core repulsion = 20114.966701 eV Total energy + Delta-G solvation = -3340.541657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.91529 -39.06964 -38.41552 -35.30669 -34.93804 -34.48266 -32.74850 -31.82660 -29.56250 -29.41402 -28.06241 -26.47819 -25.12695 -23.64253 -22.80936 -22.02887 -20.72543 -18.82038 -18.53701 -17.99871 -17.69436 -16.83049 -16.61235 -16.31138 -16.21651 -15.89513 -15.38274 -15.27765 -14.76057 -14.32098 -14.18539 -14.05376 -13.85128 -13.54068 -13.38637 -13.32830 -13.10860 -13.03204 -12.72176 -12.58886 -12.49824 -12.27836 -12.16683 -12.05420 -11.70341 -11.44905 -11.40942 -10.64888 -10.57926 -10.50770 -10.34815 -10.04497 -8.79279 -8.19040 -6.37609 0.09308 0.48872 1.35379 1.36823 1.37906 1.45860 2.14610 2.37880 2.52761 3.05180 3.06988 3.33106 3.47046 3.86252 4.10283 4.15661 4.21171 4.28122 4.33350 4.41906 4.42770 4.48534 4.54156 4.54576 4.62838 4.77145 4.78206 4.87720 4.88725 5.05229 5.06840 5.08868 5.10476 5.14600 5.28458 5.51207 5.62880 5.77966 5.88360 5.90086 6.02259 6.24104 6.48246 6.55713 6.75925 7.30700 7.40935 8.81212 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.004873 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.127037 B = 5744.186274 C = 6440.030668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.176 4.176 3 C 0.159 3.841 4 N -0.578 5.578 5 C 0.266 3.734 6 C -0.539 4.539 7 H 0.046 0.954 8 C 0.024 3.976 9 N -0.919 5.919 10 Si 0.952 3.048 11 H -0.273 1.273 12 H -0.276 1.276 13 H -0.277 1.277 14 C 0.432 3.568 15 C -0.297 4.297 16 C 0.186 3.814 17 C -0.095 4.095 18 N -0.569 5.569 19 C 0.339 3.661 20 C 0.147 3.853 21 O -0.410 6.410 22 C 0.052 3.948 23 C -0.150 4.150 24 N -0.577 5.577 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.025 0.975 31 H 0.026 0.974 32 H 0.269 0.731 33 H 0.135 0.865 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.260 7.747 5.488 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C 0.036 3.964 4 N -0.286 5.286 5 C 0.145 3.855 6 C -0.578 4.578 7 H 0.064 0.936 8 C -0.176 4.176 9 N -0.558 5.558 10 Si 0.778 3.222 11 H -0.198 1.198 12 H -0.201 1.201 13 H -0.203 1.203 14 C 0.188 3.812 15 C -0.325 4.325 16 C 0.046 3.954 17 C -0.152 4.152 18 N -0.291 5.291 19 C 0.068 3.932 20 C 0.069 3.931 21 O -0.329 6.329 22 C -0.024 4.024 23 C -0.207 4.207 24 N -0.304 5.304 25 H 0.126 0.874 26 H 0.121 0.879 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.153 0.847 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.783 7.722 5.378 17.524 hybrid contribution 1.377 -1.389 -0.277 1.976 sum -13.406 6.333 5.101 15.680 Atomic orbital electron populations 1.23823 0.94916 1.02274 0.99207 1.23264 0.96690 0.98594 1.01019 1.20509 0.91771 0.95799 0.88287 1.47009 1.13732 1.60880 1.07020 1.19065 0.76640 0.93077 0.96729 1.21587 0.94462 0.95212 1.46510 0.93614 1.25582 0.94994 1.02313 0.94737 1.69986 0.99945 1.38051 1.47834 0.85696 0.77428 0.80416 0.78664 1.19785 1.20133 1.20274 1.18765 0.88660 0.86806 0.86934 1.22207 1.02516 1.12318 0.95436 1.21823 0.91141 0.88122 0.94341 1.20763 0.96627 1.04184 0.93611 1.68044 1.03972 1.24689 1.32442 1.22881 0.96669 0.89932 0.83756 1.20873 0.82770 0.88743 1.00711 1.87931 1.21733 1.35754 1.87475 1.22726 0.79674 0.99162 1.00814 1.21769 1.00818 0.96860 1.01247 1.67736 1.15349 1.20593 1.26708 0.87441 0.87941 0.89447 0.89449 0.90037 0.95674 0.95573 0.92224 0.84693 0.89353 0.89341 0.88820 0.89107 0.89687 0.91545 0.91816 0.93088 0.92815 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 14.32 67.78 0.97 -4.13 16 2 C -0.18 -6.54 9.85 25.65 0.25 -6.29 16 3 C 0.16 5.95 5.89 85.63 0.50 6.45 16 4 N -0.58 -25.36 2.54 -712.00 -1.81 -27.17 16 5 C 0.27 13.22 5.07 85.63 0.43 13.65 16 6 C -0.54 -29.15 9.28 25.60 0.24 -28.91 16 7 H 0.05 2.58 7.45 -2.91 -0.02 2.55 16 8 C 0.02 1.30 5.46 84.66 0.46 1.76 16 9 N -0.92 -51.44 13.29 21.45 0.28 -51.16 16 10 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 14 C 0.43 18.73 7.38 133.18 0.98 19.72 16 15 C -0.30 -12.43 9.00 22.58 0.20 -12.23 16 16 C 0.19 6.81 6.81 42.41 0.29 7.10 16 17 C -0.09 -2.54 10.21 71.24 0.73 -1.81 16 18 N -0.57 -21.02 10.27 -176.29 -1.81 -22.83 16 19 C 0.34 12.41 7.27 138.76 1.01 13.42 16 20 C 0.15 4.09 6.37 71.23 0.45 4.54 16 21 O -0.41 -12.12 10.33 -148.98 -1.54 -13.66 16 22 C 0.05 1.01 6.66 71.98 0.48 1.49 16 23 C -0.15 -2.64 10.28 71.98 0.74 -1.90 16 24 N -0.58 -23.10 9.21 -185.43 -1.71 -24.81 16 25 H 0.11 3.01 7.84 -2.91 -0.02 2.99 16 26 H 0.10 2.86 8.06 -2.91 -0.02 2.84 16 27 H 0.09 3.70 7.58 -2.91 -0.02 3.67 16 28 H 0.09 3.03 7.13 -2.39 -0.02 3.01 16 29 H 0.08 2.89 7.89 -2.39 -0.02 2.87 16 30 H 0.03 1.32 6.06 -2.39 -0.01 1.31 16 31 H 0.03 1.36 7.89 -2.39 -0.02 1.34 16 32 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.14 5.95 6.16 -2.91 -0.02 5.93 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.09 2.16 8.09 -2.39 -0.02 2.14 16 36 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -64.56 366.10 4.17 -60.39 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.98 Total: 21.04 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 7.75 Total: 12.87 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -5.04 Total: -125.97 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -1.54 Total: -13.66 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -64.56 4.17 -60.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893947023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.810 kcal (2) G-P(sol) polarization free energy of solvation -64.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds