Wall clock time and date at job start Tue Mar 31 2020 07:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34953 * 126.03561 * 2 1 4 4 C 1.35316 * 107.74515 * 180.14805 * 3 2 1 5 5 C 1.50698 * 126.04279 * 179.87115 * 4 3 2 6 6 N 1.46904 * 109.47407 * 259.69473 * 5 4 3 7 7 C 1.48559 * 111.00066 * 69.86567 * 6 5 4 8 8 C 1.54387 * 104.58955 * 159.04379 * 7 6 5 9 9 C 1.54259 * 105.06271 * 336.15098 * 8 7 6 10 10 O 1.42891 * 110.32753 * 118.99791 * 9 8 7 11 11 C 1.50701 * 110.32157 * 241.10373 * 9 8 7 12 12 H 1.08005 * 119.99834 * 118.53799 * 11 9 8 13 13 C 1.37878 * 120.00375 * 298.54694 * 11 9 8 14 14 N 1.31512 * 119.99477 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00285 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46877 * 60.00101 * 15 13 11 17 17 H 1.48498 * 109.46839 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47164 * 299.99936 * 15 13 11 19 19 C 1.48560 * 111.00239 * 185.29090 * 6 5 4 20 20 C 1.39877 * 107.92237 * 359.61030 * 4 3 2 21 21 C 1.50693 * 125.90133 * 180.22578 * 20 4 3 22 22 C 1.52997 * 117.49855 * 188.74708 * 21 20 4 23 23 C 1.52994 * 117.50268 * 120.08127 * 21 20 4 24 24 N 1.30840 * 108.19618 * 0.23898 * 20 4 3 25 25 H 1.09006 * 109.47134 * 270.30896 * 1 2 3 26 26 H 1.08994 * 109.47410 * 30.31056 * 1 2 3 27 27 H 1.08998 * 109.47173 * 150.31317 * 1 2 3 28 28 H 1.08001 * 126.12819 * 359.97438 * 3 2 1 29 29 H 1.08996 * 109.47595 * 139.68554 * 5 4 3 30 30 H 1.09004 * 109.46561 * 19.68693 * 5 4 3 31 31 H 1.08999 * 110.40971 * 40.26912 * 7 6 5 32 32 H 1.08999 * 110.41180 * 277.82119 * 7 6 5 33 33 H 1.09000 * 110.32138 * 95.04641 * 8 7 6 34 34 H 1.09003 * 110.32046 * 217.14933 * 8 7 6 35 35 H 0.96701 * 113.99998 * 61.45138 * 10 9 8 36 36 H 0.97001 * 119.99820 * 180.02562 * 14 13 11 37 37 H 1.09004 * 110.40940 * 82.17346 * 19 6 5 38 38 H 1.08996 * 110.50752 * 319.78735 * 19 6 5 39 39 H 1.09004 * 115.54840 * 334.40909 * 21 20 4 40 40 H 1.08998 * 117.50252 * 359.97438 * 22 21 20 41 41 H 1.08996 * 117.50429 * 145.01937 * 22 21 20 42 42 H 1.09004 * 117.50113 * 214.97450 * 23 21 20 43 43 H 1.08998 * 117.50125 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0033 5 6 4.7680 1.5453 -0.0073 6 7 5.3065 1.6287 -1.3715 7 6 4.4045 2.4140 -2.2529 8 6 5.3032 2.8685 -3.4231 9 6 6.7383 2.8481 -2.8578 10 8 7.5478 1.9273 -3.5916 11 6 7.3405 4.2287 -2.9085 12 1 7.6397 4.7212 -1.9951 13 6 7.5093 4.8631 -4.1210 14 7 7.1443 4.2635 -5.2332 15 14 8.2550 6.5746 -4.1839 16 1 9.6215 6.5407 -3.6034 17 1 8.3284 7.0310 -5.5951 18 1 7.4086 7.5123 -3.4032 19 6 6.5861 2.3831 -1.3936 20 6 3.5347 -0.7321 0.0036 21 6 4.7497 -1.6235 0.0077 22 6 4.5257 -3.1239 -0.1912 23 6 4.9173 -2.5840 1.1867 24 7 2.2891 -1.1327 0.0057 25 1 -0.3634 0.0055 1.0277 26 1 -0.3634 0.8871 -0.5186 27 1 -0.3633 -0.8928 -0.5089 28 1 1.9281 2.1194 -0.0004 29 1 5.5219 1.1210 0.6557 30 1 4.4998 2.5435 0.3391 31 1 4.0093 3.2783 -1.7191 32 1 3.5911 1.7877 -2.6192 33 1 5.2157 2.1747 -4.2591 34 1 5.0330 3.8764 -3.7384 35 1 7.6414 2.1461 -4.5288 36 1 7.2634 4.7097 -6.0862 37 1 7.4152 1.7335 -1.1129 38 1 6.5344 3.2425 -0.7251 39 1 5.6533 -1.1886 -0.4195 40 1 3.4995 -3.4663 -0.3245 41 1 5.2821 -3.6762 -0.7487 42 1 5.9311 -2.7814 1.5349 43 1 4.1489 -2.5709 1.9597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895108972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:25 Heat of formation + Delta-G solvation = 62.272588 kcal Electronic energy + Delta-G solvation = -23734.738479 eV Core-core repulsion = 20396.575611 eV Total energy + Delta-G solvation = -3338.162867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.17747 -38.16270 -36.95268 -34.89968 -32.93237 -32.06601 -31.09754 -29.07439 -27.80609 -27.15543 -25.04114 -23.62164 -22.82462 -22.25481 -20.51770 -20.10292 -19.33572 -18.84922 -16.99773 -16.55807 -15.62247 -15.26208 -15.17386 -14.86858 -14.52690 -14.24191 -13.97989 -13.52771 -13.22808 -12.96372 -12.81064 -12.62715 -12.17640 -12.03366 -11.63851 -11.48152 -11.35904 -11.24629 -11.00635 -10.74914 -10.71405 -10.56060 -10.48610 -10.45100 -10.29097 -10.04191 -9.76479 -9.06502 -8.93012 -8.54751 -8.23236 -7.98555 -7.64246 -6.16220 -4.25024 1.97280 2.56740 2.81247 3.25274 3.30502 3.33210 4.11302 4.32734 4.47342 4.68826 4.88996 4.97220 5.01642 5.10106 5.11119 5.15426 5.24792 5.33974 5.43376 5.70470 5.72245 5.84099 5.90581 5.96905 5.99264 6.07263 6.19049 6.23281 6.26837 6.37412 6.41493 6.54050 6.72199 6.81161 7.04666 7.10962 7.13400 7.46122 7.59506 7.62607 7.81090 7.86218 7.89764 8.27563 8.77892 9.43744 9.63440 10.90223 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.022424 B = 0.004001 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.388433 B = 6996.097388 C = 7650.321563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.383 5.383 3 C 0.053 3.947 4 C -0.205 4.205 5 C 0.120 3.880 6 N -0.502 5.502 7 C 0.039 3.961 8 C -0.119 4.119 9 C 0.254 3.746 10 O -0.585 6.585 11 C -0.537 4.537 12 H 0.059 0.941 13 C 0.070 3.930 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.050 3.950 20 C 0.129 3.871 21 C -0.073 4.073 22 C -0.168 4.168 23 C -0.168 4.168 24 N -0.303 5.303 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.169 0.831 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.378 0.622 36 H 0.267 0.733 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.133 0.867 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.804 -7.614 10.353 16.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.165 5.165 3 C -0.093 4.093 4 C -0.217 4.217 5 C -0.010 4.010 6 N -0.226 5.226 7 C -0.089 4.089 8 C -0.158 4.158 9 C 0.214 3.786 10 O -0.394 6.394 11 C -0.576 4.576 12 H 0.077 0.923 13 C -0.132 4.132 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.077 4.077 20 C -0.037 4.037 21 C -0.093 4.093 22 C -0.205 4.205 23 C -0.206 4.206 24 N -0.126 5.126 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.186 0.814 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.227 0.773 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.151 0.849 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.690 -9.404 10.564 18.349 hybrid contribution 0.445 3.000 -0.419 3.062 sum -11.245 -6.404 10.146 16.443 Atomic orbital electron populations 1.21753 0.74612 1.04254 1.02835 1.48208 1.06161 1.03790 1.58306 1.22275 0.90821 0.93159 1.03030 1.19808 0.94056 0.93389 1.14434 1.20444 0.92767 0.95751 0.92009 1.65419 1.03549 1.46684 1.06984 1.23053 0.96004 0.94339 0.95463 1.22835 0.97076 1.00460 0.95413 1.19191 0.86676 0.86766 0.85971 1.86132 1.73197 1.53740 1.26294 1.21704 1.41829 1.00885 0.93178 0.92327 1.24991 0.94562 0.98078 0.95565 1.69707 1.47273 1.38480 0.97921 0.86576 0.79899 0.84026 0.77010 1.20086 1.21184 1.20258 1.23059 0.91023 0.95247 0.98386 1.21163 0.91709 0.92776 0.98074 1.20370 0.95524 0.89608 1.03781 1.22941 1.02950 0.95366 0.99240 1.22978 1.02553 1.03394 0.91690 1.77182 1.01153 1.07810 1.26422 0.91232 0.89710 0.89583 0.81413 0.90558 0.94753 0.95308 0.92350 0.92925 0.91330 0.77253 0.92340 0.91019 0.93864 0.84938 0.88443 0.88458 0.88354 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.88 11.47 59.84 0.69 1.57 16 2 N -0.38 -5.07 4.01 -68.16 -0.27 -5.34 16 3 C 0.05 0.72 11.40 -17.22 -0.20 0.52 16 4 C -0.21 -3.20 5.10 -105.05 -0.54 -3.74 16 5 C 0.12 1.95 5.07 -4.97 -0.03 1.92 16 6 N -0.50 -9.84 5.36 -231.41 -1.24 -11.08 16 7 C 0.04 0.79 5.97 -2.18 -0.01 0.78 16 8 C -0.12 -2.82 5.55 -25.35 -0.14 -2.96 16 9 C 0.25 6.39 1.05 -90.39 -0.10 6.29 16 10 O -0.59 -15.68 12.94 -35.23 -0.46 -16.14 16 11 C -0.54 -14.42 8.08 -34.44 -0.28 -14.70 16 12 H 0.06 1.56 7.58 -52.48 -0.40 1.16 16 13 C 0.07 1.86 5.02 -17.82 -0.09 1.77 16 14 N -0.89 -24.06 10.81 55.43 0.60 -23.46 16 15 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 C 0.05 1.09 5.76 -2.18 -0.01 1.08 16 20 C 0.13 2.04 6.75 -82.40 -0.56 1.48 16 21 C -0.07 -1.04 6.03 -91.78 -0.55 -1.59 16 22 C -0.17 -2.07 10.14 -26.69 -0.27 -2.34 16 23 C -0.17 -1.96 10.24 -26.69 -0.27 -2.23 16 24 N -0.30 -4.75 12.15 33.67 0.41 -4.34 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.08 1.18 8.13 -51.93 -0.42 0.76 16 30 H 0.03 0.53 7.88 -51.93 -0.41 0.13 16 31 H 0.03 0.55 7.82 -51.93 -0.41 0.14 16 32 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 33 H 0.05 1.30 7.98 -51.93 -0.41 0.89 16 34 H 0.07 1.73 7.24 -51.93 -0.38 1.36 16 35 H 0.38 10.24 7.32 45.56 0.33 10.57 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.07 1.57 8.08 -51.93 -0.42 1.15 16 38 H 0.04 0.92 7.56 -51.93 -0.39 0.52 16 39 H 0.13 2.03 8.14 -51.93 -0.42 1.60 16 40 H 0.10 1.26 7.90 -51.93 -0.41 0.85 16 41 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 352.75 15.07 5.32 5.32 Total: -1.00 -30.26 352.75 -9.27 -39.54 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.25 Total: 12.05 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -2.35 Total: -12.15 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.51 Total: -44.22 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.46 Total: -16.14 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.26 -9.27 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895108972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.809 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds