Wall clock time and date at job start Tue Mar 31 2020 07:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34954 * 126.03553 * 2 1 4 4 C 1.35312 * 107.74234 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.03666 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.47140 * 260.02154 * 5 4 3 7 7 C 1.48536 * 110.99881 * 52.60402 * 6 5 4 8 8 C 1.54934 * 103.22480 * 159.71823 * 7 6 5 9 9 C 1.54596 * 102.92468 * 322.58554 * 8 7 6 10 10 O 1.42898 * 110.30993 * 263.03718 * 9 8 7 11 11 C 1.50699 * 110.30646 * 140.87107 * 9 8 7 12 12 H 1.08003 * 120.00421 * 244.28287 * 11 9 8 13 13 C 1.37880 * 120.00022 * 64.28634 * 11 9 8 14 14 N 1.31521 * 120.00087 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 120.00119 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47082 * 60.00081 * 15 13 11 17 17 H 1.48501 * 109.47393 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47130 * 299.99996 * 15 13 11 19 19 C 1.47904 * 110.99725 * 170.00142 * 6 5 4 20 20 C 1.39866 * 107.92526 * 0.25935 * 4 3 2 21 21 C 1.50695 * 125.90215 * 179.73336 * 20 4 3 22 22 C 1.53000 * 117.50057 * 188.62144 * 21 20 4 23 23 C 1.52997 * 60.00406 * 252.51259 * 22 21 20 24 24 N 1.30835 * 108.19972 * 359.56059 * 20 4 3 25 25 H 1.09011 * 109.47018 * 90.00148 * 1 2 3 26 26 H 1.08993 * 109.47313 * 209.99982 * 1 2 3 27 27 H 1.08997 * 109.47365 * 330.00153 * 1 2 3 28 28 H 1.07999 * 126.12548 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.47103 * 140.02255 * 5 4 3 30 30 H 1.09000 * 109.47247 * 20.02132 * 5 4 3 31 31 H 1.09001 * 110.66444 * 278.15706 * 7 6 5 32 32 H 1.08998 * 110.66554 * 41.28532 * 7 6 5 33 33 H 1.09001 * 110.72161 * 204.22373 * 8 7 6 34 34 H 1.09010 * 110.87462 * 81.01847 * 8 7 6 35 35 H 0.96696 * 114.00306 * 295.72443 * 10 9 8 36 36 H 0.96997 * 120.00024 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.91912 * 333.50498 * 19 6 5 38 38 H 1.08996 * 109.91632 * 94.80621 * 19 6 5 39 39 H 1.09000 * 115.55291 * 334.33719 * 21 20 4 40 40 H 1.08997 * 117.49875 * 0.02562 * 22 21 20 41 41 H 1.09004 * 117.49559 * 145.02437 * 22 21 20 42 42 H 1.09000 * 117.50398 * 252.51095 * 23 22 21 43 43 H 1.09002 * 117.49720 * 107.48542 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5436 0.6666 0.0006 5 6 4.7679 1.5453 0.0013 6 7 5.3063 1.6361 -1.3625 7 6 4.2523 2.0480 -2.3246 8 6 5.0633 2.5913 -3.5277 9 6 6.2529 3.3073 -2.8479 10 8 5.9918 4.7079 -2.7382 11 6 7.5208 3.0699 -3.6271 12 1 8.3347 2.5190 -3.1794 13 6 7.6417 3.5561 -4.9116 14 7 6.6504 4.2266 -5.4571 15 14 9.2136 3.2625 -5.8773 16 1 9.4391 1.8021 -6.0238 17 1 9.0916 3.8813 -7.2217 18 1 10.3595 3.8702 -5.1543 19 6 6.3585 2.6721 -1.4490 20 6 3.5347 -0.7320 -0.0051 21 6 4.7496 -1.6235 -0.0122 22 6 4.5249 -3.1224 -0.2211 23 6 4.9211 -2.5934 1.1587 24 7 2.2892 -1.1327 0.0006 25 1 -0.3634 0.0000 -1.0278 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9281 2.1194 -0.0004 29 1 5.5220 1.1173 0.6619 30 1 4.4999 2.5416 0.3532 31 1 3.6480 1.1914 -2.6231 32 1 3.6264 2.8315 -1.8973 33 1 4.4680 3.2972 -4.1069 34 1 5.4142 1.7754 -4.1597 35 1 5.9150 5.1615 -3.5888 36 1 6.7357 4.5690 -6.3606 37 1 6.1963 3.4309 -0.6835 38 1 7.3401 2.2159 -1.3215 39 1 5.6518 -1.1853 -0.4389 40 1 3.4982 -3.4637 -0.3538 41 1 5.2792 -3.6706 -0.7856 42 1 5.9361 -2.7934 1.5021 43 1 4.1550 -2.5866 1.9341 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895108973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:29 Heat of formation + Delta-G solvation = 62.673179 kcal Electronic energy + Delta-G solvation = -23819.889630 eV Core-core repulsion = 20481.744134 eV Total energy + Delta-G solvation = -3338.145497 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.22282 -38.19720 -36.97692 -34.94027 -32.92485 -32.01441 -31.08901 -29.10047 -27.89457 -27.14385 -24.96524 -23.65180 -22.85281 -22.27026 -20.59151 -20.06916 -19.28690 -18.85281 -17.03934 -16.65479 -15.57678 -15.32582 -14.93809 -14.86322 -14.55881 -14.47752 -13.87215 -13.63683 -13.28757 -12.97914 -12.78401 -12.54683 -12.11556 -11.92695 -11.74702 -11.47750 -11.38548 -11.17344 -11.02779 -10.82307 -10.72611 -10.57852 -10.49042 -10.44276 -10.20384 -10.07398 -9.84107 -9.10308 -8.94273 -8.53132 -8.26263 -7.99232 -7.60865 -6.14275 -4.19999 1.95751 2.55423 2.78506 3.29707 3.33752 3.37372 4.09496 4.37096 4.45620 4.67042 4.84641 4.94405 5.02676 5.08310 5.13220 5.15104 5.25025 5.30834 5.46410 5.68253 5.70397 5.81717 5.88261 5.95659 6.01989 6.15526 6.21434 6.25264 6.33557 6.37318 6.40586 6.52384 6.60962 6.79366 7.01059 7.09673 7.16913 7.39548 7.59882 7.76803 7.81796 7.86863 7.94421 8.23031 8.81361 9.46908 9.58698 10.93363 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019639 B = 0.004245 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.385764 B = 6593.828982 C = 7321.084326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.382 5.382 3 C 0.055 3.945 4 C -0.211 4.211 5 C 0.123 3.877 6 N -0.507 5.507 7 C 0.043 3.957 8 C -0.119 4.119 9 C 0.244 3.756 10 O -0.596 6.596 11 C -0.527 4.527 12 H 0.062 0.938 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.053 3.947 20 C 0.128 3.872 21 C -0.073 4.073 22 C -0.168 4.168 23 C -0.167 4.167 24 N -0.303 5.303 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.169 0.831 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.383 0.617 36 H 0.266 0.734 37 H 0.035 0.965 38 H 0.078 0.922 39 H 0.134 0.866 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.888 -8.213 10.878 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.164 5.164 3 C -0.091 4.091 4 C -0.222 4.222 5 C -0.006 4.006 6 N -0.232 5.232 7 C -0.085 4.085 8 C -0.158 4.158 9 C 0.204 3.796 10 O -0.406 6.406 11 C -0.565 4.565 12 H 0.080 0.920 13 C -0.133 4.133 14 N -0.542 5.542 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.074 4.074 20 C -0.038 4.038 21 C -0.093 4.093 22 C -0.205 4.205 23 C -0.206 4.206 24 N -0.125 5.125 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.186 0.814 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.234 0.766 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.152 0.848 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.692 -9.746 11.232 18.316 hybrid contribution 0.734 1.619 -1.097 2.089 sum -9.958 -8.127 10.135 16.368 Atomic orbital electron populations 1.21766 0.74555 1.04012 1.03167 1.48221 1.06195 1.03772 1.58171 1.22300 0.90818 0.93189 1.02752 1.19824 0.94121 0.93431 1.14871 1.20507 0.92395 0.95679 0.92039 1.64897 1.09662 1.44671 1.03926 1.23135 0.93860 0.97120 0.94336 1.22977 0.97370 1.00026 0.95386 1.19343 0.92100 0.78913 0.89238 1.86076 1.94711 1.23018 1.36769 1.21688 1.01123 1.34941 0.98759 0.92015 1.25007 0.96629 0.94410 0.97292 1.69616 1.31373 1.37414 1.15791 0.86535 0.83390 0.78583 0.78783 1.20108 1.21292 1.20156 1.22881 0.95007 0.91491 0.98024 1.21163 0.91745 0.92728 0.98148 1.20385 0.95524 0.89504 1.03936 1.22933 1.02955 0.95430 0.99207 1.22965 1.02543 1.03289 0.91759 1.77184 1.01137 1.07811 1.26396 0.90983 0.89652 0.89758 0.81376 0.90494 0.94786 0.92305 0.95398 0.92054 0.91587 0.76590 0.92380 0.94683 0.90367 0.84840 0.88442 0.88473 0.88348 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.88 11.47 59.85 0.69 1.57 16 2 N -0.38 -5.05 4.01 -68.16 -0.27 -5.32 16 3 C 0.06 0.76 11.08 -17.22 -0.19 0.57 16 4 C -0.21 -3.28 4.43 -105.06 -0.47 -3.74 16 5 C 0.12 2.01 5.29 -4.97 -0.03 1.99 16 6 N -0.51 -9.92 5.39 -231.88 -1.25 -11.17 16 7 C 0.04 0.88 5.33 -1.90 -0.01 0.87 16 8 C -0.12 -2.83 5.49 -24.87 -0.14 -2.96 16 9 C 0.24 6.14 0.99 -90.41 -0.09 6.05 16 10 O -0.60 -15.70 12.93 -35.23 -0.46 -16.15 16 11 C -0.53 -14.31 8.10 -34.44 -0.28 -14.59 16 12 H 0.06 1.67 7.34 -52.48 -0.39 1.28 16 13 C 0.07 1.82 5.26 -17.82 -0.09 1.73 16 14 N -0.90 -24.40 10.88 55.43 0.60 -23.79 16 15 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.05 1.17 6.17 -2.75 -0.02 1.16 16 20 C 0.13 2.00 6.75 -82.41 -0.56 1.44 16 21 C -0.07 -1.02 6.04 -91.77 -0.55 -1.58 16 22 C -0.17 -2.03 10.14 -26.73 -0.27 -2.30 16 23 C -0.17 -1.91 10.23 -26.73 -0.27 -2.18 16 24 N -0.30 -4.70 12.15 33.67 0.41 -4.29 16 25 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.17 1.88 8.06 -52.49 -0.42 1.45 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.03 0.55 7.81 -51.93 -0.41 0.15 16 31 H 0.06 1.18 7.90 -51.93 -0.41 0.77 16 32 H 0.03 0.55 8.02 -51.93 -0.42 0.13 16 33 H 0.06 1.51 8.05 -51.93 -0.42 1.10 16 34 H 0.07 1.68 7.86 -51.92 -0.41 1.27 16 35 H 0.38 10.27 7.05 45.56 0.32 10.59 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.03 0.76 7.39 -51.93 -0.38 0.37 16 38 H 0.08 1.72 7.39 -51.93 -0.38 1.33 16 39 H 0.13 1.96 8.14 -51.93 -0.42 1.54 16 40 H 0.10 1.24 7.90 -51.93 -0.41 0.83 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -30.17 351.21 -9.21 -39.38 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -6.24 Total: 12.10 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -2.28 Total: -12.00 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -0.51 Total: -44.57 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.46 Total: -16.15 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.17 -9.21 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895108973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.052 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds