Wall clock time and date at job start Tue Mar 31 2020 07:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34954 * 126.03553 * 2 1 4 4 C 1.35312 * 107.74234 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.03666 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.47140 * 260.02154 * 5 4 3 7 7 C 1.48536 * 110.99881 * 52.60402 * 6 5 4 8 8 C 1.54934 * 103.22480 * 159.71823 * 7 6 5 9 9 C 1.54596 * 102.92468 * 322.58554 * 8 7 6 10 10 O 1.42898 * 110.30993 * 263.03718 * 9 8 7 11 11 C 1.50699 * 110.30646 * 140.87107 * 9 8 7 12 12 H 1.08003 * 120.00421 * 244.28287 * 11 9 8 13 13 C 1.37880 * 120.00022 * 64.28634 * 11 9 8 14 14 N 1.31521 * 120.00087 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 120.00119 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47082 * 60.00081 * 15 13 11 17 17 H 1.48501 * 109.47393 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47130 * 299.99996 * 15 13 11 19 19 C 1.47904 * 110.99725 * 170.00142 * 6 5 4 20 20 C 1.39866 * 107.92526 * 0.25935 * 4 3 2 21 21 C 1.50695 * 125.90215 * 179.73336 * 20 4 3 22 22 C 1.53000 * 117.50057 * 188.62144 * 21 20 4 23 23 C 1.52997 * 60.00406 * 252.51259 * 22 21 20 24 24 N 1.30835 * 108.19972 * 359.56059 * 20 4 3 25 25 H 1.09011 * 109.47018 * 90.00148 * 1 2 3 26 26 H 1.08993 * 109.47313 * 209.99982 * 1 2 3 27 27 H 1.08997 * 109.47365 * 330.00153 * 1 2 3 28 28 H 1.07999 * 126.12548 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.47103 * 140.02255 * 5 4 3 30 30 H 1.09000 * 109.47247 * 20.02132 * 5 4 3 31 31 H 1.09001 * 110.66444 * 278.15706 * 7 6 5 32 32 H 1.08998 * 110.66554 * 41.28532 * 7 6 5 33 33 H 1.09001 * 110.72161 * 204.22373 * 8 7 6 34 34 H 1.09010 * 110.87462 * 81.01847 * 8 7 6 35 35 H 0.96696 * 114.00306 * 295.72443 * 10 9 8 36 36 H 0.96997 * 120.00024 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.91912 * 333.50498 * 19 6 5 38 38 H 1.08996 * 109.91632 * 94.80621 * 19 6 5 39 39 H 1.09000 * 115.55291 * 334.33719 * 21 20 4 40 40 H 1.08997 * 117.49875 * 0.02562 * 22 21 20 41 41 H 1.09004 * 117.49559 * 145.02437 * 22 21 20 42 42 H 1.09000 * 117.50398 * 252.51095 * 23 22 21 43 43 H 1.09002 * 117.49720 * 107.48542 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5436 0.6666 0.0006 5 6 4.7679 1.5453 0.0013 6 7 5.3063 1.6361 -1.3625 7 6 4.2523 2.0480 -2.3246 8 6 5.0633 2.5913 -3.5277 9 6 6.2529 3.3073 -2.8479 10 8 5.9918 4.7079 -2.7382 11 6 7.5208 3.0699 -3.6271 12 1 8.3347 2.5190 -3.1794 13 6 7.6417 3.5561 -4.9116 14 7 6.6504 4.2266 -5.4571 15 14 9.2136 3.2625 -5.8773 16 1 9.4391 1.8021 -6.0238 17 1 9.0916 3.8813 -7.2217 18 1 10.3595 3.8702 -5.1543 19 6 6.3585 2.6721 -1.4490 20 6 3.5347 -0.7320 -0.0051 21 6 4.7496 -1.6235 -0.0122 22 6 4.5249 -3.1224 -0.2211 23 6 4.9211 -2.5934 1.1587 24 7 2.2892 -1.1327 0.0006 25 1 -0.3634 0.0000 -1.0278 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9281 2.1194 -0.0004 29 1 5.5220 1.1173 0.6619 30 1 4.4999 2.5416 0.3532 31 1 3.6480 1.1914 -2.6231 32 1 3.6264 2.8315 -1.8973 33 1 4.4680 3.2972 -4.1069 34 1 5.4142 1.7754 -4.1597 35 1 5.9150 5.1615 -3.5888 36 1 6.7357 4.5690 -6.3606 37 1 6.1963 3.4309 -0.6835 38 1 7.3401 2.2159 -1.3215 39 1 5.6518 -1.1853 -0.4389 40 1 3.4982 -3.4637 -0.3538 41 1 5.2792 -3.6706 -0.7856 42 1 5.9361 -2.7934 1.5021 43 1 4.1550 -2.5866 1.9341 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895108973.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:28 Heat of formation + Delta-G solvation = 42.140072 kcal Electronic energy + Delta-G solvation = -23820.780012 eV Core-core repulsion = 20481.744134 eV Total energy + Delta-G solvation = -3339.035879 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28827 -39.94488 -37.94313 -36.72168 -34.09441 -33.98626 -32.46569 -30.53642 -29.68378 -28.24965 -26.59654 -25.23340 -23.87536 -23.19441 -22.08192 -21.30977 -21.16417 -19.94658 -19.08106 -17.71825 -16.87429 -16.80390 -16.45473 -16.21153 -16.06469 -15.69713 -15.57191 -14.98438 -14.59855 -14.17373 -14.00964 -13.83026 -13.53741 -13.39408 -13.26796 -13.05714 -12.76442 -12.72837 -12.51049 -12.35232 -12.31524 -12.15103 -12.00513 -11.91514 -11.70111 -11.58164 -11.10553 -11.01818 -10.57593 -10.09556 -9.97692 -9.38455 -9.08001 -8.18512 -6.31756 0.91620 1.44029 1.44306 1.52200 1.64676 1.68841 2.41905 3.03795 3.10785 3.35643 3.55477 3.71221 3.97455 4.05161 4.10229 4.16034 4.22207 4.36395 4.38462 4.43074 4.45178 4.49295 4.60736 4.68035 4.74913 4.78262 4.80723 4.86474 4.96060 5.01631 5.12494 5.22132 5.30440 5.30947 5.34318 5.46466 5.62958 5.69845 5.80895 6.07387 6.15324 6.20452 6.33910 6.72695 6.79284 7.38266 7.48430 8.87318 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019639 B = 0.004245 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.385764 B = 6593.828982 C = 7321.084326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.380 5.380 3 C 0.063 3.937 4 C -0.240 4.240 5 C 0.130 3.870 6 N -0.509 5.509 7 C 0.062 3.938 8 C -0.111 4.111 9 C 0.229 3.771 10 O -0.601 6.601 11 C -0.553 4.553 12 H 0.055 0.945 13 C 0.027 3.973 14 N -0.917 5.917 15 Si 0.958 3.042 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.273 1.273 19 C 0.062 3.938 20 C 0.117 3.883 21 C -0.097 4.097 22 C -0.164 4.164 23 C -0.147 4.147 24 N -0.327 5.327 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.195 0.805 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.377 0.623 36 H 0.268 0.732 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 -8.698 11.715 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.161 5.161 3 C -0.084 4.084 4 C -0.251 4.251 5 C 0.001 3.999 6 N -0.234 5.234 7 C -0.066 4.066 8 C -0.150 4.150 9 C 0.190 3.810 10 O -0.410 6.410 11 C -0.592 4.592 12 H 0.074 0.926 13 C -0.172 4.172 14 N -0.557 5.557 15 Si 0.784 3.216 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.198 1.198 19 C -0.065 4.065 20 C -0.048 4.048 21 C -0.117 4.117 22 C -0.201 4.201 23 C -0.185 4.185 24 N -0.150 5.150 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.132 0.868 28 H 0.212 0.788 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.227 0.773 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.128 0.872 42 H 0.136 0.864 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.348 -10.250 12.086 19.491 hybrid contribution 0.845 1.772 -1.348 2.381 sum -10.502 -8.478 10.739 17.248 Atomic orbital electron populations 1.22161 0.71890 1.05954 1.04346 1.48629 1.07707 1.03067 1.56697 1.22691 0.90411 0.94373 1.00937 1.19820 0.94472 0.93427 1.17406 1.20459 0.93188 0.96299 0.89927 1.64867 1.09219 1.43402 1.05897 1.22904 0.93491 0.97217 0.92947 1.22763 0.97339 0.98727 0.96185 1.19581 0.91900 0.78471 0.91093 1.86068 1.94755 1.23834 1.36391 1.21972 1.01952 1.35584 0.99661 0.92642 1.25689 0.99405 0.94125 0.98023 1.69699 1.32578 1.37493 1.15972 0.85608 0.79991 0.78417 0.77580 1.19910 1.20676 1.19804 1.22705 0.95819 0.91860 0.96165 1.21399 0.92229 0.93105 0.98115 1.20387 0.94839 0.90248 1.06232 1.22956 1.02915 0.94193 1.00039 1.23005 1.03522 1.00981 0.91040 1.77130 1.01400 1.09138 1.27375 0.90122 0.88885 0.86753 0.78814 0.89763 0.94228 0.91966 0.94394 0.93592 0.94027 0.77261 0.92238 0.94406 0.90777 0.86127 0.89276 0.87188 0.86402 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.33 11.47 127.77 1.47 2.80 16 2 N -0.38 -9.24 4.01 -369.57 -1.48 -10.72 16 3 C 0.06 1.59 11.08 83.54 0.93 2.52 16 4 C -0.24 -7.11 4.43 -20.15 -0.09 -7.20 16 5 C 0.13 4.09 5.29 85.56 0.45 4.54 16 6 N -0.51 -19.62 5.39 -887.54 -4.78 -24.41 16 7 C 0.06 2.48 5.33 86.65 0.46 2.94 16 8 C -0.11 -5.37 5.49 31.80 0.17 -5.19 16 9 C 0.23 11.64 0.99 -10.66 -0.01 11.63 16 10 O -0.60 -31.95 12.93 -148.98 -1.93 -33.88 16 11 C -0.55 -30.43 8.10 25.60 0.21 -30.23 16 12 H 0.06 3.03 7.34 -2.91 -0.02 3.01 16 13 C 0.03 1.46 5.26 84.65 0.45 1.91 16 14 N -0.92 -50.03 10.88 21.45 0.23 -49.79 16 15 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 19 C 0.06 2.73 6.17 86.45 0.53 3.26 16 20 C 0.12 3.55 6.75 43.10 0.29 3.84 16 21 C -0.10 -2.65 6.04 -11.54 -0.07 -2.72 16 22 C -0.16 -3.81 10.14 30.59 0.31 -3.50 16 23 C -0.15 -3.15 10.23 30.60 0.31 -2.84 16 24 N -0.33 -9.77 12.15 -47.39 -0.58 -10.35 16 25 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.20 3.69 8.06 -2.91 -0.02 3.67 16 29 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.04 1.21 7.81 -2.39 -0.02 1.19 16 31 H 0.06 2.45 7.90 -2.39 -0.02 2.43 16 32 H 0.04 1.44 8.02 -2.39 -0.02 1.42 16 33 H 0.05 2.31 8.05 -2.39 -0.02 2.29 16 34 H 0.04 2.16 7.86 -2.38 -0.02 2.14 16 35 H 0.38 20.59 7.05 -74.06 -0.52 20.07 16 36 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 37 H 0.04 1.61 7.39 -2.39 -0.02 1.59 16 38 H 0.07 3.27 7.39 -2.39 -0.02 3.25 16 39 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 40 H 0.09 2.22 7.90 -2.39 -0.02 2.20 16 41 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -64.42 351.21 -0.62 -65.03 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: 0.48 Total: 37.31 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 5.41 Total: -18.24 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -6.61 Total: -95.27 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.93 Total: -33.88 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -64.42 -0.62 -65.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895108973.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.174 kcal (2) G-P(sol) polarization free energy of solvation -64.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds