Wall clock time and date at job start Tue Mar 31 2020 06:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46921 * 2 1 4 4 C 1.46499 * 120.00171 * 85.02548 * 3 2 1 5 5 C 1.50700 * 109.46978 * 95.40899 * 4 3 2 6 6 H 1.07993 * 120.00128 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99866 * 180.02562 * 5 4 3 8 8 N 1.31521 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00125 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46982 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47269 * 119.99663 * 9 7 5 12 12 H 1.48504 * 109.47276 * 239.99687 * 9 7 5 13 13 C 1.34777 * 119.99487 * 265.02346 * 3 2 1 14 14 O 1.21566 * 120.00561 * 5.54570 * 13 3 2 15 15 C 1.47713 * 119.99886 * 185.54378 * 13 3 2 16 16 N 1.32211 * 126.67408 * 355.21754 * 15 13 3 17 17 N 1.28845 * 110.14996 * 179.97438 * 16 15 13 18 18 H 0.97005 * 124.98433 * 180.09092 * 17 16 15 19 19 C 1.34315 * 110.04120 * 0.05749 * 17 16 15 20 20 C 1.35595 * 107.21589 * 359.65222 * 19 17 16 21 21 C 1.50376 * 124.61884 * 179.90361 * 20 19 17 22 22 C 1.53479 * 108.22856 * 16.68608 * 21 20 19 23 23 H 1.08995 * 109.46643 * 70.31817 * 22 21 20 24 24 C 1.53000 * 109.46627 * 190.29862 * 22 21 20 25 25 C 1.53112 * 109.50461 * 310.31137 * 22 21 20 26 26 C 1.50716 * 128.90737 * 179.79932 * 19 17 16 27 27 H 1.08999 * 109.47114 * 60.00165 * 1 2 3 28 28 H 1.09009 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47395 * 300.00264 * 1 2 3 30 30 H 1.09000 * 109.47395 * 239.99736 * 2 1 3 31 31 H 1.09006 * 109.47063 * 119.99409 * 2 1 3 32 32 H 1.09002 * 109.46840 * 215.40715 * 4 3 2 33 33 H 1.09001 * 109.47077 * 335.40352 * 4 3 2 34 34 H 0.96995 * 120.00370 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.89611 * 256.90585 * 21 20 19 36 36 H 1.08995 * 109.59330 * 136.28736 * 21 20 19 37 37 H 1.08996 * 109.46942 * 180.02562 * 24 22 21 38 38 H 1.08999 * 109.46707 * 300.03819 * 24 22 21 39 39 H 1.09001 * 109.46996 * 60.03883 * 24 22 21 40 40 H 1.08999 * 109.44074 * 310.00317 * 25 22 21 41 41 H 1.09002 * 109.41049 * 190.10003 * 25 22 21 42 42 H 1.08998 * 109.68741 * 316.40661 * 26 19 17 43 43 H 1.09003 * 109.68701 * 76.94002 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1587 2.1086 1.2639 5 6 3.5796 1.9957 1.7532 6 1 4.3053 1.4377 1.1803 7 6 3.9528 2.6040 2.9329 8 7 3.0689 3.2832 3.6309 9 14 5.7138 2.4635 3.5398 10 1 6.5048 1.6517 2.5803 11 1 6.3091 3.8196 3.6500 12 1 5.7275 1.8072 4.8719 13 6 2.3383 1.9828 -1.1629 14 8 2.1275 1.4171 -2.2181 15 6 2.9452 3.3294 -1.1552 16 7 3.1501 4.0973 -0.0986 17 7 3.6995 5.2066 -0.4559 18 1 3.9446 5.9255 0.1475 19 6 3.8837 5.2215 -1.7863 20 6 3.4229 4.0409 -2.2685 21 6 3.4387 3.6462 -3.7194 22 6 4.4104 4.5757 -4.4593 23 1 5.4329 4.3433 -4.1619 24 6 4.2600 4.3736 -5.9684 25 6 4.0946 6.0315 -4.1054 26 6 4.4835 6.3038 -2.6468 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.9103 3.1585 1.1085 33 1 1.4839 1.6815 2.0058 34 1 3.3314 3.7108 4.4610 35 1 2.4393 3.7475 -4.1423 36 1 3.7745 2.6135 -3.8136 37 1 4.9503 5.0334 -6.4939 38 1 4.4847 3.3372 -6.2203 39 1 3.2376 4.6064 -6.2660 40 1 3.0280 6.2136 -4.2367 41 1 4.6592 6.6944 -4.7612 42 1 4.0962 7.2749 -2.3385 43 1 5.5689 6.2928 -2.5472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896860103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:25 Heat of formation + Delta-G solvation = 25.172523 kcal Electronic energy + Delta-G solvation = -24349.478384 eV Core-core repulsion = 21009.706737 eV Total energy + Delta-G solvation = -3339.771647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.19275 -38.62720 -37.33082 -35.05216 -32.70285 -32.24575 -31.20091 -30.42659 -28.88716 -26.89330 -26.16131 -23.96383 -23.19155 -22.88023 -21.52756 -20.73049 -18.74258 -18.07420 -17.16318 -16.48464 -15.86160 -15.42051 -15.10634 -14.54981 -14.31690 -14.21542 -13.81081 -13.52063 -13.36260 -12.97413 -12.70399 -12.63994 -12.29353 -12.22188 -11.98087 -11.81030 -11.54987 -11.47061 -11.38021 -10.87091 -10.83077 -10.69768 -10.50790 -10.41338 -10.28203 -10.04905 -9.62215 -9.43625 -9.10052 -8.63874 -8.35353 -8.06649 -7.54374 -5.99508 -4.00156 2.45132 2.63049 3.25679 3.34472 3.40104 3.44450 4.05296 4.30949 4.46128 4.73148 4.84041 4.89085 5.13160 5.28185 5.35287 5.41605 5.47615 5.59291 5.66647 5.73489 5.78247 5.88185 5.89639 5.90464 5.95376 5.98874 6.10541 6.14281 6.32218 6.33238 6.34679 6.51548 6.55916 6.70546 6.73480 6.95997 7.02760 7.47446 7.61495 7.86729 7.93518 8.30218 8.44027 8.64140 9.02143 9.17059 9.61743 11.08446 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.006288 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.877141 B = 4451.945716 C = 5837.160174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.586 5.586 4 C 0.232 3.768 5 C -0.503 4.503 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.893 5.893 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.285 1.285 13 C 0.600 3.400 14 O -0.570 6.570 15 C -0.009 4.009 16 N -0.180 5.180 17 N -0.383 5.383 18 H 0.439 0.561 19 C -0.016 4.016 20 C -0.151 4.151 21 C -0.029 4.029 22 C -0.094 4.094 23 H 0.070 0.930 24 C -0.145 4.145 25 C -0.106 4.106 26 C -0.043 4.043 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.030 0.970 34 H 0.258 0.742 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.928 5.600 -12.484 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.316 5.316 4 C 0.112 3.888 5 C -0.542 4.542 6 H 0.071 0.929 7 C -0.133 4.133 8 N -0.533 5.533 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.211 1.211 13 C 0.387 3.613 14 O -0.450 6.450 15 C -0.169 4.169 16 N -0.015 5.015 17 N -0.096 5.096 18 H 0.282 0.718 19 C -0.142 4.142 20 C -0.162 4.162 21 C -0.067 4.067 22 C -0.113 4.113 23 H 0.088 0.912 24 C -0.202 4.202 25 C -0.144 4.144 26 C -0.082 4.082 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.628 5.379 -11.690 12.884 hybrid contribution 1.380 0.390 0.360 1.478 sum 2.008 5.769 -11.330 12.872 Atomic orbital electron populations 1.22108 0.96822 1.01119 1.02058 1.21267 0.93551 0.83630 1.02377 1.48180 1.61646 1.13330 1.08400 1.19739 0.97022 0.93404 0.78611 1.21340 0.95269 1.31665 1.05915 0.92939 1.24767 0.96688 0.95312 0.96568 1.69942 1.33447 1.34590 1.15284 0.86658 0.85714 0.77614 0.78683 1.20027 1.21302 1.21080 1.16945 0.77451 0.83303 0.83640 1.90648 1.57103 1.65902 1.31313 1.21524 1.08180 0.97293 0.89886 1.74888 1.10657 0.92695 1.23246 1.43424 1.44804 1.15431 1.05906 0.71758 1.21021 1.08423 0.99202 0.85540 1.19742 1.06343 0.93866 0.96246 1.19910 0.98970 0.99162 0.88667 1.21272 1.00054 0.94797 0.95142 0.91155 1.21807 1.01565 1.01617 0.95210 1.21589 1.01881 0.96615 0.94346 1.20117 0.99905 0.94732 0.93448 0.92784 0.92484 0.92522 0.90936 0.90676 0.91724 0.95216 0.93177 0.91147 0.90379 0.92999 0.92525 0.92666 0.91492 0.91445 0.90849 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.24 37.16 0.38 -2.35 16 2 C 0.12 2.24 6.12 -4.04 -0.02 2.21 16 3 N -0.59 -13.39 2.47 -176.22 -0.44 -13.83 16 4 C 0.23 5.87 4.78 -5.19 -0.02 5.84 16 5 C -0.50 -13.62 8.05 -34.44 -0.28 -13.89 16 6 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 7 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 8 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 9 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.60 13.92 7.62 -12.39 -0.09 13.83 16 14 O -0.57 -13.44 15.44 5.31 0.08 -13.35 16 15 C -0.01 -0.20 6.73 -82.99 -0.56 -0.76 16 16 N -0.18 -3.96 7.95 33.28 0.26 -3.69 16 17 N -0.38 -6.70 6.82 33.42 0.23 -6.47 16 18 H 0.44 6.30 8.96 -190.21 -1.71 4.59 16 19 C -0.02 -0.26 7.12 -82.44 -0.59 -0.84 16 20 C -0.15 -2.79 5.99 -104.88 -0.63 -3.42 16 21 C -0.03 -0.45 4.82 -27.79 -0.13 -0.59 16 22 C -0.09 -1.12 2.70 -90.31 -0.24 -1.36 16 23 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 24 C -0.14 -1.42 9.16 37.16 0.34 -1.08 16 25 C -0.11 -1.10 5.19 -26.47 -0.14 -1.23 16 26 C -0.04 -0.48 6.31 -27.67 -0.17 -0.65 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.39 7.36 -51.93 -0.38 1.01 16 31 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 32 H 0.07 1.73 5.66 -51.93 -0.29 1.43 16 33 H 0.03 0.78 8.03 -51.93 -0.42 0.37 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 36 H 0.08 1.35 7.77 -51.93 -0.40 0.94 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 41 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -31.57 346.71 -9.42 -40.99 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.24 Total: 1.71 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.26 Total: -2.54 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.79 Total: -48.31 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.57 -9.42 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896860103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.163 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds