Wall clock time and date at job start Tue Mar 31 2020 06:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46921 * 2 1 4 4 C 1.46499 * 120.00171 * 85.02548 * 3 2 1 5 5 C 1.50700 * 109.46978 * 95.40899 * 4 3 2 6 6 H 1.07993 * 120.00128 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99866 * 180.02562 * 5 4 3 8 8 N 1.31521 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00125 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46982 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47269 * 119.99663 * 9 7 5 12 12 H 1.48504 * 109.47276 * 239.99687 * 9 7 5 13 13 C 1.34777 * 119.99487 * 265.02346 * 3 2 1 14 14 O 1.21566 * 120.00561 * 5.54570 * 13 3 2 15 15 C 1.47713 * 119.99886 * 185.54378 * 13 3 2 16 16 N 1.32211 * 126.67408 * 355.21754 * 15 13 3 17 17 N 1.28845 * 110.14996 * 179.97438 * 16 15 13 18 18 H 0.97005 * 124.98433 * 180.09092 * 17 16 15 19 19 C 1.34315 * 110.04120 * 0.05749 * 17 16 15 20 20 C 1.35595 * 107.21589 * 359.65222 * 19 17 16 21 21 C 1.50376 * 124.61884 * 179.90361 * 20 19 17 22 22 C 1.53479 * 108.22856 * 16.68608 * 21 20 19 23 23 H 1.08995 * 109.46643 * 70.31817 * 22 21 20 24 24 C 1.53000 * 109.46627 * 190.29862 * 22 21 20 25 25 C 1.53112 * 109.50461 * 310.31137 * 22 21 20 26 26 C 1.50716 * 128.90737 * 179.79932 * 19 17 16 27 27 H 1.08999 * 109.47114 * 60.00165 * 1 2 3 28 28 H 1.09009 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47395 * 300.00264 * 1 2 3 30 30 H 1.09000 * 109.47395 * 239.99736 * 2 1 3 31 31 H 1.09006 * 109.47063 * 119.99409 * 2 1 3 32 32 H 1.09002 * 109.46840 * 215.40715 * 4 3 2 33 33 H 1.09001 * 109.47077 * 335.40352 * 4 3 2 34 34 H 0.96995 * 120.00370 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.89611 * 256.90585 * 21 20 19 36 36 H 1.08995 * 109.59330 * 136.28736 * 21 20 19 37 37 H 1.08996 * 109.46942 * 180.02562 * 24 22 21 38 38 H 1.08999 * 109.46707 * 300.03819 * 24 22 21 39 39 H 1.09001 * 109.46996 * 60.03883 * 24 22 21 40 40 H 1.08999 * 109.44074 * 310.00317 * 25 22 21 41 41 H 1.09002 * 109.41049 * 190.10003 * 25 22 21 42 42 H 1.08998 * 109.68741 * 316.40661 * 26 19 17 43 43 H 1.09003 * 109.68701 * 76.94002 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1587 2.1086 1.2639 5 6 3.5796 1.9957 1.7532 6 1 4.3053 1.4377 1.1803 7 6 3.9528 2.6040 2.9329 8 7 3.0689 3.2832 3.6309 9 14 5.7138 2.4635 3.5398 10 1 6.5048 1.6517 2.5803 11 1 6.3091 3.8196 3.6500 12 1 5.7275 1.8072 4.8719 13 6 2.3383 1.9828 -1.1629 14 8 2.1275 1.4171 -2.2181 15 6 2.9452 3.3294 -1.1552 16 7 3.1501 4.0973 -0.0986 17 7 3.6995 5.2066 -0.4559 18 1 3.9446 5.9255 0.1475 19 6 3.8837 5.2215 -1.7863 20 6 3.4229 4.0409 -2.2685 21 6 3.4387 3.6462 -3.7194 22 6 4.4104 4.5757 -4.4593 23 1 5.4329 4.3433 -4.1619 24 6 4.2600 4.3736 -5.9684 25 6 4.0946 6.0315 -4.1054 26 6 4.4835 6.3038 -2.6468 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.9103 3.1585 1.1085 33 1 1.4839 1.6815 2.0058 34 1 3.3314 3.7108 4.4610 35 1 2.4393 3.7475 -4.1423 36 1 3.7745 2.6135 -3.8136 37 1 4.9503 5.0334 -6.4939 38 1 4.4847 3.3372 -6.2203 39 1 3.2376 4.6064 -6.2660 40 1 3.0280 6.2136 -4.2367 41 1 4.6592 6.6944 -4.7612 42 1 4.0962 7.2749 -2.3385 43 1 5.5689 6.2928 -2.5472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896860103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:24 Heat of formation + Delta-G solvation = 6.656624 kcal Electronic energy + Delta-G solvation = -24350.281294 eV Core-core repulsion = 21009.706737 eV Total energy + Delta-G solvation = -3340.574557 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.62802 -40.40044 -38.37624 -36.86825 -34.65332 -33.66020 -32.37023 -31.94060 -30.21638 -28.88242 -27.26715 -25.56051 -24.92424 -24.14319 -23.02746 -21.90285 -20.02125 -19.67693 -18.61648 -18.48589 -17.55289 -17.05569 -16.62928 -16.30729 -15.74841 -15.46886 -15.05631 -15.00839 -14.44156 -14.37272 -14.19583 -14.03716 -13.91425 -13.48050 -13.38025 -13.25572 -13.09630 -12.87515 -12.69269 -12.65326 -12.35489 -12.17319 -11.83013 -11.67879 -11.64124 -11.44543 -11.35024 -11.10010 -10.80930 -10.45393 -10.13554 -9.48863 -9.34375 -8.09082 -6.16663 0.81668 1.26640 1.34117 1.38023 1.47977 2.07501 2.35330 2.51811 2.59784 3.22055 3.58764 3.74408 3.90275 3.98476 4.12951 4.23681 4.37831 4.39435 4.45059 4.54592 4.63504 4.64884 4.78653 4.82496 4.89474 5.00095 5.02125 5.04904 5.07964 5.08943 5.15909 5.26212 5.28997 5.37827 5.42517 5.52878 5.61093 5.63105 5.80882 5.92964 6.20928 6.37538 6.57017 6.86820 7.13554 7.38982 7.50006 8.98202 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.006288 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.877141 B = 4451.945716 C = 5837.160174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.107 3.893 3 N -0.593 5.593 4 C 0.251 3.749 5 C -0.507 4.507 6 H 0.032 0.968 7 C 0.032 3.968 8 N -0.916 5.916 9 Si 0.942 3.058 10 H -0.282 1.282 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.590 3.410 14 O -0.583 6.583 15 C -0.043 4.043 16 N -0.224 5.224 17 N -0.375 5.375 18 H 0.451 0.549 19 C 0.010 3.990 20 C -0.177 4.177 21 C -0.026 4.026 22 C -0.089 4.089 23 H 0.067 0.933 24 C -0.141 4.141 25 C -0.103 4.103 26 C -0.042 4.042 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.014 0.986 34 H 0.262 0.738 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.248 7.366 -13.535 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 N -0.322 5.322 4 C 0.130 3.870 5 C -0.546 4.546 6 H 0.051 0.949 7 C -0.167 4.167 8 N -0.557 5.557 9 Si 0.769 3.231 10 H -0.208 1.208 11 H -0.203 1.203 12 H -0.204 1.204 13 C 0.378 3.622 14 O -0.464 6.464 15 C -0.201 4.201 16 N -0.060 5.060 17 N -0.090 5.090 18 H 0.297 0.703 19 C -0.117 4.117 20 C -0.187 4.187 21 C -0.064 4.064 22 C -0.108 4.108 23 H 0.086 0.914 24 C -0.198 4.198 25 C -0.140 4.140 26 C -0.081 4.081 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.940 7.138 -12.732 14.725 hybrid contribution 0.965 -0.148 0.658 1.178 sum 2.905 6.990 -12.074 14.250 Atomic orbital electron populations 1.22004 0.94533 1.03155 1.01183 1.21489 0.95472 0.82099 1.02448 1.48233 1.61958 1.14405 1.07625 1.19343 0.95792 0.92852 0.79039 1.21307 0.95556 1.31672 1.06041 0.94935 1.25336 0.99982 0.94873 0.96528 1.70025 1.35002 1.35025 1.15627 0.85766 0.81497 0.77810 0.78018 1.20753 1.20255 1.20357 1.17290 0.77342 0.84093 0.83471 1.90610 1.57805 1.66539 1.31461 1.21642 1.09628 0.97268 0.91602 1.74738 1.12691 0.94347 1.24190 1.43475 1.43734 1.14678 1.07081 0.70275 1.21752 1.05670 0.99396 0.84838 1.20156 1.07091 0.94643 0.96821 1.19913 0.99788 0.98820 0.87862 1.21247 0.98483 0.95094 0.95940 0.91410 1.21778 1.02425 1.01836 0.93772 1.21620 1.02383 0.95737 0.94296 1.20411 1.00826 0.94050 0.92773 0.93737 0.88973 0.93171 0.90868 0.90483 0.93043 0.96835 0.92839 0.91750 0.93057 0.90615 0.93270 0.92388 0.91747 0.87931 0.87934 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 10.24 71.98 0.74 -4.32 16 2 C 0.11 4.28 6.12 86.38 0.53 4.81 16 3 N -0.59 -28.23 2.47 -829.71 -2.05 -30.28 16 4 C 0.25 13.17 4.78 85.63 0.41 13.57 16 5 C -0.51 -28.16 8.05 25.60 0.21 -27.95 16 6 H 0.03 1.90 7.81 -2.91 -0.02 1.88 16 7 C 0.03 1.76 5.46 84.65 0.46 2.22 16 8 N -0.92 -51.74 13.29 21.45 0.28 -51.46 16 9 Si 0.94 43.74 29.54 68.60 2.03 45.76 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 13 C 0.59 28.66 7.62 86.75 0.66 29.32 16 14 O -0.58 -28.70 15.44 -3.92 -0.06 -28.76 16 15 C -0.04 -1.95 6.73 42.14 0.28 -1.67 16 16 N -0.22 -10.09 7.95 -48.62 -0.39 -10.47 16 17 N -0.38 -12.95 6.82 -48.17 -0.33 -13.28 16 18 H 0.45 12.47 8.96 -219.79 -1.97 10.50 16 19 C 0.01 0.31 7.12 41.57 0.30 0.61 16 20 C -0.18 -6.56 5.99 -20.03 -0.12 -6.68 16 21 C -0.03 -0.81 4.82 29.91 0.14 -0.66 16 22 C -0.09 -1.93 2.70 -10.60 -0.03 -1.96 16 23 H 0.07 1.51 8.12 -2.39 -0.02 1.49 16 24 C -0.14 -2.43 9.16 71.98 0.66 -1.77 16 25 C -0.10 -1.72 5.19 30.76 0.16 -1.56 16 26 C -0.04 -0.77 6.31 29.98 0.19 -0.58 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 2.88 7.36 -2.39 -0.02 2.87 16 31 H 0.08 3.00 8.11 -2.38 -0.02 2.98 16 32 H 0.05 2.87 5.66 -2.39 -0.01 2.86 16 33 H 0.01 0.75 8.03 -2.39 -0.02 0.73 16 34 H 0.26 14.01 8.31 -92.71 -0.77 13.23 16 35 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 36 H 0.05 1.85 7.77 -2.39 -0.02 1.83 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.15 8.12 -2.39 -0.02 1.13 16 41 H 0.10 1.11 8.11 -2.39 -0.02 1.09 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -70.40 346.71 3.11 -67.29 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -0.96 Total: 17.81 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 4.59 Total: 3.38 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -2.48 Total: -105.49 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.06 Total: -28.76 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -70.40 3.11 -67.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896860103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.949 kcal (2) G-P(sol) polarization free energy of solvation -70.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds