Wall clock time and date at job start Tue Mar 31 2020 06:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46492 * 109.47277 * 2 1 4 4 C 1.46507 * 120.00051 * 268.41550 * 3 2 1 5 5 C 1.50694 * 109.47339 * 263.64832 * 4 3 2 6 6 H 1.08007 * 120.00352 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00310 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99661 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00338 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47277 * 120.00030 * 9 7 5 12 12 H 1.48502 * 109.46834 * 239.99730 * 9 7 5 13 13 C 1.34779 * 120.00156 * 88.42172 * 3 2 1 14 14 O 1.21563 * 120.00094 * 4.30669 * 13 3 2 15 15 C 1.47712 * 119.99811 * 184.31648 * 13 3 2 16 16 N 1.32208 * 126.67770 * 354.83156 * 15 13 3 17 17 N 1.28847 * 110.14865 * 180.02562 * 16 15 13 18 18 H 0.96996 * 124.98352 * 179.72286 * 17 16 15 19 19 C 1.34318 * 110.03913 * 359.67966 * 17 16 15 20 20 C 1.35579 * 107.21897 * 0.11920 * 19 17 16 21 21 C 1.50373 * 124.61918 * 179.85970 * 20 19 17 22 22 C 1.53472 * 108.28639 * 343.70536 * 21 20 19 23 23 H 1.09005 * 109.46674 * 289.48343 * 22 21 20 24 24 C 1.53005 * 109.45975 * 169.50361 * 22 21 20 25 25 C 1.53109 * 109.51409 * 49.49364 * 22 21 20 26 26 C 1.50714 * 128.90377 * 180.15656 * 19 17 16 27 27 H 1.08998 * 109.47268 * 300.00282 * 1 2 3 28 28 H 1.09000 * 109.46999 * 60.00445 * 1 2 3 29 29 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47172 * 239.99764 * 2 1 3 31 31 H 1.09003 * 109.46949 * 120.00333 * 2 1 3 32 32 H 1.09001 * 109.46963 * 23.64617 * 4 3 2 33 33 H 1.08996 * 109.47145 * 143.64675 * 4 3 2 34 34 H 0.97000 * 119.99597 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.70176 * 103.40619 * 21 20 19 36 36 H 1.09000 * 109.70348 * 224.00909 * 21 20 19 37 37 H 1.08997 * 109.46499 * 299.96209 * 24 22 21 38 38 H 1.08999 * 109.46970 * 59.96148 * 24 22 21 39 39 H 1.08997 * 109.47309 * 179.97438 * 24 22 21 40 40 H 1.09001 * 109.44527 * 169.90256 * 25 22 21 41 41 H 1.09004 * 109.40831 * 49.99289 * 25 22 21 42 42 H 1.08995 * 109.69532 * 282.98476 * 26 19 17 43 43 H 1.09004 * 109.68733 * 43.52310 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2956 2.0601 -1.2683 5 6 3.7647 1.9514 -1.5856 6 1 4.4259 1.4285 -0.9103 7 6 4.2649 2.5186 -2.7385 8 7 3.4596 3.1540 -3.5616 9 14 6.0859 2.3833 -3.1322 10 1 6.7702 1.6243 -2.0547 11 1 6.2615 1.6750 -4.4254 12 1 6.6738 3.7436 -3.2290 13 6 2.2127 2.0272 1.1668 14 8 2.0581 1.4399 2.2198 15 6 2.6133 3.4490 1.1658 16 7 2.9088 4.1855 0.1084 17 7 3.2162 5.3824 0.4731 18 1 3.4722 6.0987 -0.1288 19 6 3.1291 5.4933 1.8088 20 6 2.7463 4.2841 2.2878 21 6 2.5323 3.9703 3.7428 22 6 3.1984 5.0734 4.5763 23 1 4.2819 4.9838 4.4978 24 6 2.7797 4.9287 6.0409 25 6 2.7606 6.4443 4.0536 26 6 3.3902 6.6967 2.6777 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.7164 1.5928 -2.0647 33 1 2.0184 3.1110 -1.1860 34 1 3.8116 3.5534 -4.3725 35 1 1.4643 3.9404 3.9591 36 1 2.9830 3.0069 3.9811 37 1 1.6963 5.0186 6.1195 38 1 3.0913 3.9528 6.4131 39 1 3.2530 5.7118 6.6331 40 1 3.0855 7.2184 4.7488 41 1 1.6744 6.4684 3.9655 42 1 4.4645 6.8448 2.7870 43 1 2.9419 7.5810 2.2247 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896860104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:33 Heat of formation + Delta-G solvation = 25.555253 kcal Electronic energy + Delta-G solvation = -24310.498466 eV Core-core repulsion = 20970.743416 eV Total energy + Delta-G solvation = -3339.755051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.22735 -38.62821 -37.34796 -35.03683 -32.71048 -32.26727 -31.21994 -30.44754 -28.91949 -26.87006 -26.17542 -24.01609 -23.21689 -22.82434 -21.56589 -20.75674 -18.76361 -18.08276 -17.19766 -16.47561 -15.83603 -15.44140 -15.14668 -14.54448 -14.30520 -14.25026 -13.86550 -13.52154 -13.34935 -12.98659 -12.71361 -12.63729 -12.29340 -12.21714 -11.99163 -11.83013 -11.56036 -11.49323 -11.39627 -10.87299 -10.83813 -10.70842 -10.52271 -10.41769 -10.29002 -10.04366 -9.63043 -9.41939 -9.09351 -8.66204 -8.34267 -8.09232 -7.53956 -5.99179 -4.00285 2.41745 2.61039 3.27377 3.35734 3.40970 3.42340 4.06987 4.27133 4.47681 4.71635 4.82592 4.87609 5.11668 5.26766 5.35640 5.40117 5.46136 5.57657 5.65203 5.71988 5.76950 5.85683 5.88159 5.90518 5.93986 5.97871 6.08531 6.12991 6.30770 6.32705 6.33396 6.50304 6.54393 6.69093 6.71657 6.95852 6.99991 7.46876 7.61538 7.87967 7.94516 8.31061 8.43495 8.61673 9.02790 9.17327 9.62185 11.08694 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.006057 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.809479 B = 4621.452288 C = 5918.110547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.585 5.585 4 C 0.228 3.772 5 C -0.506 4.506 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.893 5.893 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.600 3.400 14 O -0.570 6.570 15 C -0.007 4.007 16 N -0.186 5.186 17 N -0.384 5.384 18 H 0.439 0.561 19 C -0.014 4.014 20 C -0.152 4.152 21 C -0.031 4.031 22 C -0.094 4.094 23 H 0.070 0.930 24 C -0.145 4.145 25 C -0.107 4.107 26 C -0.043 4.043 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.258 0.742 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 6.848 12.264 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.315 5.315 4 C 0.108 3.892 5 C -0.546 4.546 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.533 5.533 9 Si 0.715 3.285 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.213 1.213 13 C 0.387 3.613 14 O -0.450 6.450 15 C -0.167 4.167 16 N -0.020 5.020 17 N -0.096 5.096 18 H 0.283 0.717 19 C -0.140 4.140 20 C -0.162 4.162 21 C -0.069 4.069 22 C -0.112 4.112 23 H 0.089 0.911 24 C -0.202 4.202 25 C -0.145 4.145 26 C -0.082 4.082 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.612 6.525 11.456 13.440 hybrid contribution 1.288 0.444 -0.216 1.379 sum -1.325 6.969 11.241 13.292 Atomic orbital electron populations 1.22118 0.96870 1.01173 1.01974 1.21264 0.93369 0.83726 1.02514 1.48184 1.62103 1.13110 1.08087 1.19841 0.96323 0.94630 0.78382 1.21370 0.93349 1.34079 1.05755 0.92883 1.24778 0.97180 0.95274 0.96136 1.69948 1.34381 1.36687 1.12257 0.86629 0.86109 0.77616 0.78158 1.19976 1.21082 1.21272 1.16924 0.76829 0.83863 0.83661 1.90643 1.55227 1.67460 1.31632 1.21566 1.09499 0.95736 0.89878 1.74873 1.13278 0.90111 1.23770 1.43451 1.49715 1.10840 1.05609 0.71733 1.21032 1.09352 0.98243 0.85404 1.19749 1.08325 0.91998 0.96143 1.19936 1.00452 0.98351 0.88147 1.21267 1.00547 0.94701 0.94715 0.91126 1.21807 1.01337 1.01569 0.95492 1.21594 1.00947 0.97138 0.94782 1.20123 1.01278 0.93036 0.93784 0.92809 0.92614 0.92407 0.90482 0.91016 0.95318 0.91148 0.93181 0.91290 0.90046 0.92681 0.92497 0.92986 0.91414 0.91504 0.90524 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 10.23 37.16 0.38 -2.33 16 2 C 0.11 2.23 6.11 -4.05 -0.02 2.21 16 3 N -0.59 -13.42 2.48 -176.23 -0.44 -13.86 16 4 C 0.23 5.79 4.76 -5.19 -0.02 5.77 16 5 C -0.51 -13.87 8.51 -34.44 -0.29 -14.16 16 6 H 0.05 1.52 7.81 -52.48 -0.41 1.11 16 7 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 8 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.60 13.97 7.61 -12.39 -0.09 13.88 16 14 O -0.57 -13.50 15.34 5.31 0.08 -13.42 16 15 C -0.01 -0.15 6.80 -82.99 -0.56 -0.72 16 16 N -0.19 -4.06 8.15 33.28 0.27 -3.79 16 17 N -0.38 -6.63 6.82 33.42 0.23 -6.40 16 18 H 0.44 6.17 8.96 -190.22 -1.71 4.46 16 19 C -0.01 -0.23 7.12 -82.45 -0.59 -0.81 16 20 C -0.15 -2.77 5.99 -104.88 -0.63 -3.40 16 21 C -0.03 -0.48 4.89 -27.80 -0.14 -0.61 16 22 C -0.09 -1.10 2.70 -90.32 -0.24 -1.34 16 23 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 24 C -0.14 -1.41 9.16 37.16 0.34 -1.06 16 25 C -0.11 -1.08 5.19 -26.47 -0.14 -1.22 16 26 C -0.04 -0.47 6.31 -27.67 -0.17 -0.65 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.46 8.06 -51.92 -0.42 1.04 16 31 H 0.07 1.39 7.41 -51.93 -0.38 1.00 16 32 H 0.03 0.76 8.02 -51.93 -0.42 0.34 16 33 H 0.07 1.87 5.30 -51.93 -0.28 1.60 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 36 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.55 8.11 -51.93 -0.42 0.12 16 41 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -31.87 346.83 -9.40 -41.28 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.21 Total: 1.63 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.28 Total: -2.70 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.80 Total: -48.47 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.87 -9.40 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896860104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.835 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds